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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL84217_cuf0 >transcript:BL84217_cuf0-protein ID=transcript:BL84217_cuf0-protein|Name=transcript:BL84217_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=137bp
MADKGEDGRAEGKLSKFKGGMFLAAVAGTGLLAGFSTTLGMTKKKSPDMF
DKGVVGGPGIESGVSVGLRALKWGTLYAVVGVGSLAFLTFKILGVSNLAE
FRTEMQQKLPRIPKARTKNRVENLDSLFGIQEETTER Run BLAST on NCBI mRNA from alignment at Sc0000109:8168..12296+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL84217_cuf0 ID=transcript:BL84217_cuf0|Name=transcript:BL84217_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4129bp|location=Sequence derived from alignment at Sc0000109:8168..12296+ (Branchiostoma lanceolatum)
GGTGACCACAATGAGCGCCACGGTGAAGTAGAAGATGCCTGTCTGTCGGG
CCATCATGATCCGGCCGTTACAGTGGAACTTGTTACGGCCGGGGTGAACT
TCCCACTTTCTCTGCGGCATCTTCTTCTTGGGTACAGCGGCGGGGGAGGA
GGGGGAAAGGGGTGAAGCGGAGGCTGAGCCTGGGGGGTCCACGGTCGGAA
CGACGCAGTAGTCACGGCCTTTCATGCCCTCATTGAACCACCGGTGGTCG
CCTGCCTAGCCTCTGGTGTTACACCAGGCCAGGCAAGCTCGTGAAGATGT
TAAAGGCGTTCTAAACGAGTCTGTGGCGGGGAAACCTGGTCCTGTGTACC
GCTTGCCCTGGAGGAGGAGTACCCTGTTCTTCTCGCGCTCTCCCCCCACC
ACCTGTCCAGCCTCCTGAAAAACCACCCCTGATTCCGTCGCATAAAATCA
GCCTCGGACGATCTCATAAGCCACGCAGACACAGTGTTTCCTCACATTAG
CCTCCACGGTAGTATCAAGGACTCAGTGCGGAGGAAATGAAGTCGTAATT
GGACTGGAAATCGGAGAAAATATTGTTAGAAACTGTATTTTTTTTCGCCA
CCGCTGTTTGTAGTCTCCTGATCACCAGCCTTCCCAGGGATCAGTGCGAC
TGACAACACTGCGCATGCGCGTCTAGGATTCCAGTTCAAAGTTTAAAGTT
CAAAGAAGTGACCTATCCCACAATCCCTTGTACCAACATGGCGGACAAAG
GTGAAGATGGGAGGGCGGAGGGCAAGTTATCCAAGTTTAAAGGTGATTCC
TGCTGTCAATCAAGTAATCTAGGTCACAGTTTCTACGGAATAGAAAGAAA
GACATATCATGTATCTATAGAGTCAGTATTAGGGCCTTCCAAAGAAAGAT
AATGGTCAAACTGCCGACCTAAACTGGAAGTGGTTCAAGGCATAGTTTGA
GCAGACGACAAAAATTATGTTGCAAAGCTAACGTGAAGTTGTAGTCCATT
GACGTTTTGCAACGTGAAAGAAAATACTGACAGCACACAAATAACTATAA
TGCACCAACGCAACGTATATTAATCTTTGACATAGTGACATGGTTATTTC
GTATTGCAATGAAAGGAAAAACAAGTCTAACTACTTTTCAGGAGGAATGT
TCCTGGCTGCAGTGGCTGGGACTGGTTTGCTGGCAGGCTTCAGCACAACA
CTAGGGATGACCAAGAAAAAAAGTCCAGACATGTTTGATAAGGTAAACAT
GTGGGGTATATAGTTTATAACTAGTCCCATAAGCCCATTCATGGTTCCGA
CTGCGCATTTGCAGTGTCAAAGGTGAAGGGAGCACACCCCAGTTTATTTG
AGGTTTCAATTGGAGGCTGCGCACCCTCAAGTCTAGGTACTGTCTCTTCC
AGGGAATTACTGTATTCCGAAGTAAATCAACTGTGTATGGGGAGTTGGGG
TGAAAGCCTATCCCTTCCGCTACAAGACCAACTGACTTTCGTTTCTTCAA
CCTCTCTAATTTTGGTAAATCAGAAGAAAAAAACATCATTTTCACATAAA
AAATGATGGGCAAATTTTGGCATTTTCGCGTAGGAAAACAATTTTGAGGT
AGAAACGACTGATGTTGTCAGAAAGAGAAGAACCTAGGCTAAGCATACAA
TCGAGCCAATCATAAAGAAAATTCTATTACTAGAATTTCATTAATCACAA
GGCATGTCAACATCACCCACAGAAAGGTCAATCTCGGGTCAGGGGACATT
TCACTATCAACGCAGATGGATATCCGGAAATACAGCTCGGACCGAAATGT
AATTTTCACCCAAAATACAACAATTCATATACTTTTCAGCCATGCTAGTA
TCTAATATCAGTTCGAAGCATATTATGAGAAATGTGAACTCAAACCCAGC
CCCTCGAAACCCTTTCGTCACTTTTTTGTCGCGCACTACCACGGACCCCG
GTCACGGAAGAACTGGGGCGTGCACCGTTAAGGCTTGTAAACAGTGCTCG
TTTCAACATTGTCTAGATTTGCATAACAACGCCCCTGACAGGTTTTGTTT
ACGTCTCGGGGGCCTTTCCCTTTGACACTGCACATGCGTAGTTGGAACCA
TGAATGGGCTTATACATGTGCATCAGGTTCAGTGTGAAAGAACAAAAATG
TGGGACATCCCTGTATAATGTGCATCTGTTGTATGCACATTCACCATAAA
GATTTTGTTGCTTTCTCCAGATTTCAGGCAGGCCCAAACATTTTCATGGA
ATGCTATATTTACTGTGTTTTTCACATTATAATAATATGCCTTACCTTGA
GCCCCCTGGGTGTCCCAACCCAGACAAGGGGCTGTCCAAGGTGTTTTTAA
ATATTCATCTTGTGTATTGTATGTCTGTTCTAAGTACAATAAAGATGATT
TTAACTCTATGCCTATTGTGTTTTGATCATAGTCGCAAGTAAGAGACTTA
GAGGCATTAGTGAGACAAACTAGAAGGATGACTTCAGAAATCATTGATCA
TTGCAATGATATTGCAAAATGTGCCATGTTGTTTCTTCCAGGGGGTGGTT
GGTGGTCCGGGTATCGAGAGTGGAGTTTCAGTTGGACTGAGAGCATTAAA
ATGGGGGACGCTCTATGCAGTAGTTGGAGTCGGAAGCCTTGCCTTTCTTA
CATTCAAGATCCTGGGCGTCAGTAATGTATGTAAACTTTTTCAATATGTC
TGAGATAGATCTGTGTTTCCTTTTCAGTAAATGCTGACAGCTTTTGTGCA
TATCATGTTGGATCTCGGCCATATTTATAACATTCTGTGATGATCAATTT
CTGTCTCACATAACAATCTTCTCTCTCATACAGTTAGCAGAGTTCCGCAC
AGAGATGCAACAAAAACTACCAAGAATACCGAAGGCACGGACAAAAAATA
GGGTTGAAAACTTGGACTCTTTATTTGGGATTCAGGAAGAAACCACAGAG
AGATAGTTGTCAATACACTTTGCTGTACTCAGAAATACAAATACTTTTTG
AAAAACAAGTGACAGAAGTTGTAGATAGTTACAGATATTGTCCCCACTTG
ATGGATGCTGGTTGCATAAGTTGTATGTTAGTGTTAGCGAAGGCAAATGT
GTCATTCAGGAGAAGAATTGATTATACAACTTCATGACAATGTTAGTCTT
TATCGTCACTGGCTTTGAGAAGATGTAACCTGTGCTTCCAATTTAGAACA
GTAATGACTTTTTGTGTAAGTATTAGTTGTTAAACTAGGTGTAAAGTCTT
ATATATTGGTAATGTTTTAAGAAAATGTTATTTGTTATCTGTATGAATCA
GCAGATATACCTTTTGGTGTGAGATGCCAACTTCACAGACATTCACTGGC
TGGCTATATTACATGTACATTTAAAATAAAAGACATGCGTTTAATATGTA
AGACCCTTGTGTCTGATGACTCTAACTGAAATGTCAAAAAATGAAGGATC
ATACTTATCTATACGTCATGCAGTTTTAACATTATGACTGCATGTTTTAT
TAGTTTTGCAATTGATTGCCACATTACAACTGTTACAATGGATGCAGTGT
TATGGTCTGCATATGATTAGACACTGATCATACAACTCATGTAGTAATTA
ATGTACATCTCTGTATGTCACCCAACATTGTTAGAAAGGAAATTCAACAC
AGCAAGAATTCTCTACTTCAGATGGTGAAGTAACAGACAGAAAATACATG
TATAGTATGCAAGACAATGAAATGTGGTCCAANTTTACAGTACATGTACA
GAAAGAATTCATTTTGGAGAAACAATGTTTACCAGGTTGCTGGATTTCTA
TACATTCTTTATAACATATATACTGTACATACAACTTATTAATATGTTTG
TACTCAAGCCCAGGTGATCATCATCAAGTCTTACTGACAGCTTTACAATA
TATGTACAGTGTACTTTTACAAGTACAAGTGTTAAGACAGCAGATGAACT
AAACTGTTGCAGCATATCTTTTAAATTCAGAATTAGGTATATGTACTTAC
ATTTTAACAAGCTTTTTGGCTAATTCATATTGCTTGGTTGGCAGAGCCAT
GTATTAAATCAACAAAACAAGTTTCTTTGTCCTATTGCTTAGAAAAAGGT
TTTAGGAAAATGCATGACAAGAGTGTGTG Coding sequence (CDS) from alignment at Sc0000109:8168..12296+ >transcript:BL84217_cuf0 ID=transcript:BL84217_cuf0|Name=transcript:BL84217_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1656bp|location=Sequence derived from alignment at Sc0000109:8168..12296+ (Branchiostoma lanceolatum)
ATGGCGGACAAAGGTGAAGATGGGAGGGCGGAGGGCAAGTTATCCAAGTT
TAAAGGAGGAATGTTCCTGGCTGCAGTGGCTGGGACTGGTTTGCTGGCAG
GCTTCAGCACAACACTAGGGATGACCAAGAAAAAAAGTCCAGACATGTTT
GATAAGGGGGTGGTTGGTGGTCCGGGTATCGAGAGTGGAGTTTCAGTTGG
ACTGAGAGCATTAAAATGGGGGACGCTCTATGCAGTAGTTGGAGTCGGAA
GCCTTGCCTTTCTTACATTCAAGATCCTGGGCGTCAGTAATTTAGCAGAG
TTCCGCACAGAGATGCAACAAAAACTACCAAGAATACCGAAGGCACGGAC
AAAAAATAGGGTTGAAAACTTGGACTCTTTATTTGGGATTCAGGAAGAAA
CCACAGAGAGATAGATGGCGGACAAAGGTGAAGATGGGAGGGCGGAGGGC
AAGTTATCCAAGTTTAAAGGAGGAATGTTCCTGGCTGCAGTGGCTGGGAC
TGGTTTGCTGGCAGGCTTCAGCACAACACTAGGGATGACCAAGAAAAAAA
GTCCAGACATGTTTGATAAGGGGGTGGTTGGTGGTCCGGGTATCGAGAGT
GGAGTTTCAGTTGGACTGAGAGCATTAAAATGGGGGACGCTCTATGCAGT
AGTTGGAGTCGGAAGCCTTGCCTTTCTTACATTCAAGATCCTGGGCGTCA
GTAATTTAGCAGAGTTCCGCACAGAGATGCAACAAAAACTACCAAGAATA
CCGAAGGCACGGACAAAAAATAGGGTTGAAAACTTGGACTCTTTATTTGG
GATTCAGGAAGAAACCACAGAGAGATAGATGGCGGACAAAGGTGAAGATG
GGAGGGCGGAGGGCAAGTTATCCAAGTTTAAAGGAGGAATGTTCCTGGCT
GCAGTGGCTGGGACTGGTTTGCTGGCAGGCTTCAGCACAACACTAGGGAT
GACCAAGAAAAAAAGTCCAGACATGTTTGATAAGGGGGTGGTTGGTGGTC
CGGGTATCGAGAGTGGAGTTTCAGTTGGACTGAGAGCATTAAAATGGGGG
ACGCTCTATGCAGTAGTTGGAGTCGGAAGCCTTGCCTTTCTTACATTCAA
GATCCTGGGCGTCAGTAATTTAGCAGAGTTCCGCACAGAGATGCAACAAA
AACTACCAAGAATACCGAAGGCACGGACAAAAAATAGGGTTGAAAACTTG
GACTCTTTATTTGGGATTCAGGAAGAAACCACAGAGAGATAGATGGCGGA
CAAAGGTGAAGATGGGAGGGCGGAGGGCAAGTTATCCAAGTTTAAAGGAG
GAATGTTCCTGGCTGCAGTGGCTGGGACTGGTTTGCTGGCAGGCTTCAGC
ACAACACTAGGGATGACCAAGAAAAAAAGTCCAGACATGTTTGATAAGGG
GGTGGTTGGTGGTCCGGGTATCGAGAGTGGAGTTTCAGTTGGACTGAGAG
CATTAAAATGGGGGACGCTCTATGCAGTAGTTGGAGTCGGAAGCCTTGCC
TTTCTTACATTCAAGATCCTGGGCGTCAGTAATTTAGCAGAGTTCCGCAC
AGAGATGCAACAAAAACTACCAAGAATACCGAAGGCACGGACAAAAAATA
GGGTTGAAAACTTGGACTCTTTATTTGGGATTCAGGAAGAAACCACAGAG
AGATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000109 | genome | Sc0000109:8168..12296 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL84217_cuf0 |
| Biotype | protein_coding |
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