transcript:BL83870_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83870_cuf0
Unique Nametranscript:BL83870_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83870_cuf0

>transcript:BL83870_cuf0-protein ID=transcript:BL83870_cuf0-protein|Name=transcript:BL83870_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=106bp
ANKTARAKFYNPVEQLLSPPATDNCAYMKNAIPFCTYCEFDSENNIHMCD
SDVCFTGRAFDHFQHSLCMFISYIHSLTHSLTHSLTHSLRSSCSNLYKYI
SCNFRL
Run BLAST on NCBI

mRNA from alignment at xpSc0039750:16292..16908+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83870_cuf0 ID=transcript:BL83870_cuf0|Name=transcript:BL83870_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=617bp|location=Sequence derived from alignment at xpSc0039750:16292..16908+ (Branchiostoma lanceolatum)
GCCAATAAAACGGCCAGAGCCAAATTCTACAATCCTGTGGAGCAACTCCT
TTCTCCTCCTGCCACAGACAATTGTGCTTATATGAAGAATGCAATTCCAT
TTTGTACCTACTGTGAATTTGACAGTGAAAACAATATACATATGTGTGAC
TCAGATGTTTGTTTTACTGGTCGAGCATTTGACCATTTCCAGCATTCTTT
ATGCATGTTTATCAGTTATATTCACTCTCTCACTCACTCACTCACTCACT
CACTCACTCACTCACTCAGGTCCTCTTGCTCTAATCTATACAAATATATT
TCCTGTAATTTTAGATTATAGTCACTGACTTTTCTCAAAATTCAACTTTA
GGCACATAGAAATAACACCAAATTCTTCTTACAAATACTTTTTTATTGCA
CAATGCTACTGTTACTGACTATTGCATAGACTATATTTTCTGCAAATTCC
TACTTCCTGCATAGTACAACTTACGGCACATAGGAAATTCTTCATCTTCT
TTTCTACATGTACGTACAGGTAGGTTAAAAATGAAATAATTTCTTCATTA
CACAAAGGGAAAAGGTATTGTAGCCTTCTGCACAGAAGCTTGAGATGGAA
TCTACAATTTGTATCCA

Coding sequence (CDS) from alignment at xpSc0039750:16292..16908+

>transcript:BL83870_cuf0 ID=transcript:BL83870_cuf0|Name=transcript:BL83870_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=321bp|location=Sequence derived from alignment at xpSc0039750:16292..16908+ (Branchiostoma lanceolatum)
GCCAATAAAACGGCCAGAGCCAAATTCTACAATCCTGTGGAGCAACTCCT
TTCTCCTCCTGCCACAGACAATTGTGCTTATATGAAGAATGCAATTCCAT
TTTGTACCTACTGTGAATTTGACAGTGAAAACAATATACATATGTGTGAC
TCAGATGTTTGTTTTACTGGTCGAGCATTTGACCATTTCCAGCATTCTTT
ATGCATGTTTATCAGTTATATTCACTCTCTCACTCACTCACTCACTCACT
CACTCACTCACTCACTCAGGTCCTCTTGCTCTAATCTATACAAATATATT
TCCTGTAATTTTAGATTATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83870gene:BL83870Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83870_cuf0-E1BL83870_cuf0-E1-1564476830-556640Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83870_cuf0transcript:BL83870_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0039750genomexpSc0039750:16292..16908 +
Properties
Property NameValue
Transcript idBL83870_cuf0
Biotypeprotein_coding