transcript:BL83760_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83760_cuf0
Unique Nametranscript:BL83760_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83760_cuf0

>transcript:BL83760_cuf0-protein ID=transcript:BL83760_cuf0-protein|Name=transcript:BL83760_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=163bp
YQTDMLINQLRQRLQDIYIQDWHSSIKNNSKLSIYSSLKKIYGQEKYLTS
VHNFEIRKSITKIRICSHKLNIETGRYRKIPSDQRFCPFCPNEIEDERHF
IMNCSRYEDKRSKLFTFISDCSSQFNMLHSVDRFDYILRGDNPYCVQIGI
YIKECLDIRTSNV
Run BLAST on NCBI

mRNA from alignment at xpSc0039745:18082..18582+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83760_cuf0 ID=transcript:BL83760_cuf0|Name=transcript:BL83760_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=501bp|location=Sequence derived from alignment at xpSc0039745:18082..18582+ (Branchiostoma lanceolatum)
TATCAGACCGACATGTTAATCAATCAGTTACGACAACGTCTGCAGGATAT
ATATATACAAGATTGGCATAGTTCTATTAAAAACAATTCAAAACTGTCTA
TCTATTCCTCTTTAAAGAAAATATACGGACAAGAAAAGTACCTTACAAGC
GTACATAACTTCGAAATTCGTAAATCAATTACAAAGATAAGAATATGTAG
CCATAAATTGAACATTGAAACCGGAAGGTATCGTAAAATTCCCAGTGATC
AAAGGTTTTGTCCATTCTGCCCAAATGAAATTGAAGACGAACGTCACTTT
ATCATGAATTGTTCAAGATATGAGGATAAACGCTCTAAGCTGTTCACCTT
TATTTCCGATTGTTCAAGTCAATTCAATATGCTCCATTCTGTTGATAGAT
TTGATTATATACTGAGAGGAGACAATCCTTACTGTGTTCAAATAGGTATA
TACATCAAAGAATGTTTAGACATAAGAACAAGTAATGTATAAGTATACGA
C

Coding sequence (CDS) from alignment at xpSc0039745:18082..18582+

>transcript:BL83760_cuf0 ID=transcript:BL83760_cuf0|Name=transcript:BL83760_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=492bp|location=Sequence derived from alignment at xpSc0039745:18082..18582+ (Branchiostoma lanceolatum)
TATCAGACCGACATGTTAATCAATCAGTTACGACAACGTCTGCAGGATAT
ATATATACAAGATTGGCATAGTTCTATTAAAAACAATTCAAAACTGTCTA
TCTATTCCTCTTTAAAGAAAATATACGGACAAGAAAAGTACCTTACAAGC
GTACATAACTTCGAAATTCGTAAATCAATTACAAAGATAAGAATATGTAG
CCATAAATTGAACATTGAAACCGGAAGGTATCGTAAAATTCCCAGTGATC
AAAGGTTTTGTCCATTCTGCCCAAATGAAATTGAAGACGAACGTCACTTT
ATCATGAATTGTTCAAGATATGAGGATAAACGCTCTAAGCTGTTCACCTT
TATTTCCGATTGTTCAAGTCAATTCAATATGCTCCATTCTGTTGATAGAT
TTGATTATATACTGAGAGGAGACAATCCTTACTGTGTTCAAATAGGTATA
TACATCAAAGAATGTTTAGACATAAGAACAAGTAATGTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83760gene:BL83760Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83760_cuf0-E1BL83760_cuf0-E1-1564476830-556458Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83760_cuf0transcript:BL83760_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xpSc0039745genomexpSc0039745:18082..18582 +
Properties
Property NameValue
Transcript idBL83760_cuf0
Biotypeprotein_coding