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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL83748_cuf1 >transcript:BL83748_cuf1-protein ID=transcript:BL83748_cuf1-protein|Name=transcript:BL83748_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=113bp
MFVSVTGSCCQRTKDRGGVVNTYVNLLGEGAVGLVCVLNSTPSCSCCICR
TLNSCSYHSSALCFSASRCLVGVKRSGVVILRLELWYAHINYHDPIQWKL
FMRPHSWVPLSIH Run BLAST on NCBI mRNA from alignment at Sc0000290:318815..323106- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL83748_cuf1 ID=transcript:BL83748_cuf1|Name=transcript:BL83748_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4292bp|location=Sequence derived from alignment at Sc0000290:318815..323106- (Branchiostoma lanceolatum)
CGCGAACGGATATTTAAGAAACCTGCGGTTAGGTTTGTCAGTTACAGGGC
CGCCATTGTGAGGTGAGGACGTTGGCTTGTGACAGCAGAGTTTATTTTCG
TATTTTGACTGTTTTTGCCTGAAAAACATCGCAGTTTTCGTGTGGTATGG
CTGTTTCGGTGATTAGTTATCATCAGTGAAGGGTCATTGAGGTTTGAGGT
TGTTTCTAGCGAGGTAAAAAAAGGCGTTTTTCGTGAGAGTCATGGCGGCC
GTGTGTGGGGGGAATTTTCTGGCGTTAAACAATCTATTTTGACCGACATT
CTCGCCAATGGTGGCAAATGGTAACCATTGGTGCTGTTTGTGTGTAACCC
TGAGGTAGTGGACTATATTTCTCTGATTTTTGCGCCTGGAAAATTTCCAT
CATGTTTGTTTCTGTCACCGGGTCCTGTTGTCAGAGAACAAAGGACCGGG
GTGGCGTGGTCAATACGTATGTAAATCTCCTTGGTGAAGGGGCAGTAGGT
CTTGTTTGCGTACTGAACAGCACCCCTTCGTGCTCCTGCTGCATCTGCAG
AACCCTTAACTCGTGCTCCTACCATTCTTCTGCCCTCTGTTTCTCTGCCT
CTCGCTGCCTAGTTGGGGTTAAGCGCTCAGGGGTAGTGATTTTGAGGCTT
GAGCTGTGGTATGCACACATTAATTACCACGACCCTATACAATGGAAACT
GTTCATGCGCCCGCACAGTTGGGTACCTTTGTCCATCCACTGAACACGAG
CATATTACTGGAAAGTGCGTGTACACATGTGTTCTTCCCTGAATATTTTC
CCCAGCCTTACGTCACAGGTGCCACAAAGATATGTCAATTTAAAATGTGA
TCAGCTTGTCTCATTTAAAGCAAGACACATGAAGTTTTTGCATTAATTCC
CACAGGTCAACACAGACAGGATTGTAACAACACAACAAAGGTGTTCATCA
GCATGGCACAGCGGGTTCCTCTCAGGGTTCTTGTTCAAGTCTACAAATGG
CTGGTGGAAAATGAAAATAATATAAAAATACTTCACTCAAGTCAGAAAAT
GTTCCAGCTTTATACATATTTATAGTTACCCCTCGTGGTTGCTCGTACTT
TGCCATCCACACCAAAATTCACGAGCAAATATGATTATTTTCTTCCAATG
GATGCTTCAAACTCCCTGCCAGCTAAGCCTCACAGCAAACAAGTGGTTTT
GAAGATGCAGCTGGTCAAGGAAATACTTGCTTCACCCTATTGAACTAATT
AACTGTGCCACACTTTGTGTGTACATCCTCTCTCTTATCTGGGGTACAAG
TGATACCTGAATCAGAACTTCTATTTCCTGTGAAGAATTATCTTCGTGTA
GCCAATCGAATAGGCGATACTAGTGCGCCAGTTGTTTCAGATGTCCTTGT
AGTCACTCTAGCAGACTCCTTCCTGAGGTGCCACTTCTCACGTGCTCTAC
ATTCTCAGGGGTTGGCTCAGCAAGACGCCCGCCCTGTGGTTTTTACATTA
CAGGACGTCTTCCATTCCCATACACTGCAATGATTTTAGGCATGTCTGCG
ATAGTTACGGTCAGCTGCCATTCAATGGGCAACATTATGTCGACAAAATC
TCGAGGGCTTTCTCCTCTCAGTAGAAACTTCACGGCATAGACGACCCTAT
GTGGGCATACTGCAACCAGCAAACCTTCTACAACAAGATTAAATCATACT
TGTTGTATAGAATTAGAAAGGACCAAATTATATGTTTTATTGCCATCACA
TCGTTATGTTACTTATTGTCGTTTTCTAGATGTGGCTGGTCAAGGTGAGG
GAAAAAAAAAGAAAAATAGTTCCTCCGCATGAACCAACAGATGAAGACAC
AAATAGTGCAAGGGTGTAATGAAATAATCATTTTTTTTTTCCAATAACAT
TATAAAGGAATTCAAAGTCGAACTTACGTTAAGGAAGCCTGCTGAAGTCT
AGCTCTCAGAGATTTGATTTTATTTGACTGTAGAAAAGTACAGCCAGGAC
TACCCAACTAGCCGAAGGCTATTTCAAAGGGTTAGCCCTGGGAACAGTAT
TCAAAGTTCAATACAAACTTTCACAAAGTGCGCATGCGTCAAACACACAC
ATAGCGGCGGACACAGAACACAAAGTAAGATTACATCGAAGAAACAAAAT
TAACAAAAACCATCACAAGACTGAAGCGCATATGGAAAAAAAATGCACAA
GACTAAGCTATATATAAATCGTTAACAATGTCAAGCCAAAACTTAGGTTT
ATATTACATACTAGGTTAGCAGATTATACAACATGATCGCATGTGCCGCC
CTTAGTAGCGTCACTTTCAAGGCAGACATCAGCTGCCTACTTCTAAGCGC
AGATTCGTATCGTTGTTCTACTTGAATAAAGTCCTGGCTTACTCGTAGTG
GCGTATGTGCTTCCAGCTGAAAGCTCATTTGTTGTAGAAATATCCACTGT
TTCGTCACACATCAGTCCCAGGAATGGACTGCCTCTGACGGTAACCAGTA
GGTCCTCTTTCAACTGTGTGCCAAAGACAGGGAGGAATTCATCCACAACT
GTACTGCTGGTGTATGTTGCATTGCCAGCAGCATCCATTGAATACAACTA
CATAACTGAGTAAGTGTGAACAATTATGCCTTCTTGAAAGCAAGTCCCCG
TCGTCGGTGAACTTGGCTTCTTGCTGTGATGACTCGAATGACTCAGGCTA
CTCGGAAGTGTTCCTCGACCAGAGATTTATTCTCAAATCCATAGATGTAC
AGGAATGTTCAAGTAGTCATGCCAATAACAATAACAGTTCCTCTCACTCT
GCGACTAGGTTCAAAGTCAATTGAAAGTCGGTGACTAAGAAACGTAATTT
CTAAGGATCGGACTTCTTTAAGCTGCTGCTCGCGTTTCTCGGAGCGGACC
TAGTCAGCTGTGAGAGTCTTCTCCAAAGAAAACTTCGTTCCGAAAACTTC
TCGTTCGAGAGCACTTCTCTATTTTATCTTCTAAGTTTTGGGAGTTGCCT
TGATCCAACTCTGATTGGGTCGAAATATGCAAATTGGAATTAATAACTTC
TCAAGAAACTCCGGAACTCTTGAATAAATATACACAATACGGAACGCTAC
CTTGAGGAACTAAGTAATGGGTGCCCTACAAATAGGACATGTCGGGTTCG
TCTGAAAAAACATAAAGAACTATATGCATAGTTGTCTGTAGAGTTTAAAT
ATACGTAATGCGGAACGGTACCTTGAGGAACTAACAAGTAATGATGCAGA
TGCCCTACAAATAGGACATGTCGGGTTTGTCTGAAAAGAATGAACGGATA
TGTGTTAAATTCTTACTACTACATCTGACATATATTCACATCAATAGTAC
TATACAATTGGATGAGATGTCTGTTCCGTTTTAATCACATTTTAGGGTAT
AGTATACCTACGCGAATATCTGACAATAGTTTGTAGCTTACTGTACCTTA
GAACTATTTTGAAAATTGTCCGAAGTTTACTTGAAACCTCTTTGTGGCTA
TATATTCCAACGGTCTGGAGGCTGCCATTTTGGCAATAGGTGACCTCAAT
TCGAAAAGGTGCCCGCAATCTCAGGTGCCCCAGGTAAAAAATTTTGACGC
ATACACAAAACTGTAAATTCTATTCAAGGAGGTCTATTAAGGAGGATCCT
TCTTGGTCTATTAAGGCCTATGTGAAAACTATATGTAGCCTACCTTCAGC
CATTAAGTGATACAAGTCTGGTGGTAAACATGTTTACAATGTAGCGTTGT
TGATTTCTTGGTCTTCATTATATGTAGTTTTAAATGATCTATATGATTTC
TTTTAGAAACGTTTGGAAGTATATAACTCTTACATCAAGCGCTTCCCACC
TCTTCCCACTGAAATGCAGCTTGCAAGCACGTTCCCAACGCATTTCTGCT
GAGCGAGTAGTAAGATTTTAGCGAGTAAAACGTGTTGCGGAGTCTCCCAT
GCTGTTGTTGTTGCCTTTCCCATTACCGCATGTCGACGCGCCGACTCTCA
TCGATTTCTCCCACCAGATCTGCTGCATCTACCTTAAAGGGGTACAAGTT
GCAGGAAAATCTCGACAATACTCAAGTAGATATAGATAAATACCAGTCTA
TCGGTCCCGAGAAAAAAGGAGCGATGTGTTCCGCAAAACCGTGTGAACGC
CGTGAGACGAGATTATCCGCGGTGACCCTTCGTCTGCGCCTGACGCCGTA
CCCGTATCGTCCAATATGACAACAATTTTAGTAGATAGTCAAGTCTTCTA
AAATTCTACCATAGAATGAAAGACTATAGTACTGGAGTCATG Coding sequence (CDS) from alignment at Sc0000290:318815..323106- >transcript:BL83748_cuf1 ID=transcript:BL83748_cuf1|Name=transcript:BL83748_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=342bp|location=Sequence derived from alignment at Sc0000290:318815..323106- (Branchiostoma lanceolatum)
ATGTTTGTTTCTGTCACCGGGTCCTGTTGTCAGAGAACAAAGGACCGGGG
TGGCGTGGTCAATACGTATGTAAATCTCCTTGGTGAAGGGGCAGTAGGTC
TTGTTTGCGTACTGAACAGCACCCCTTCGTGCTCCTGCTGCATCTGCAGA
ACCCTTAACTCGTGCTCCTACCATTCTTCTGCCCTCTGTTTCTCTGCCTC
TCGCTGCCTAGTTGGGGTTAAGCGCTCAGGGGTAGTGATTTTGAGGCTTG
AGCTGTGGTATGCACACATTAATTACCACGACCCTATACAATGGAAACTG
TTCATGCGCCCGCACAGTTGGGTACCTTTGTCCATCCACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000290 | genome | Sc0000290:318815..323106 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL83748_cuf1 |
| Biotype | protein_coding |
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