transcript:BL83716_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL83716_cuf0
Unique Nametranscript:BL83716_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL83716_cuf0

>transcript:BL83716_cuf0-protein ID=transcript:BL83716_cuf0-protein|Name=transcript:BL83716_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=250bp
MMLKVATLFVILLVTPKEATGETEDPVVPFEFPVNEDNQKAIEININNNN
NYNNNNNVPTNFDEFMAARQRAINELAKTPDLTWAEQGKLSKDMDDANNA
LVIFTLQAHVKDLVGEVKSLRSDLCQIKRAVKACCNKTLTCPSGYEWFCE
KPGMCYKFATDEKNYTDASSTCHQVAGGHLAMPKDKVTNDLLSNQVKARY
QDDAVWFGLMKGSGDHEWVWDDMTHLGNWSNWPERAGETDPETSPGSKCV
Run BLAST on NCBI

mRNA from alignment at Sc0000010:4769622..4772031+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL83716_cuf0 ID=transcript:BL83716_cuf0|Name=transcript:BL83716_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2410bp|location=Sequence derived from alignment at Sc0000010:4769622..4772031+ (Branchiostoma lanceolatum)
AGGAAAGTCATTTCTAGATCCTTGTGCGCGGAGAGAACCTGAACCATGAT
GCTGAAAGTTGCCACGCTGTTTGTGATCCTCCTGGTGACCCCAAAGGAGG
CTACAGGGGAAACTGAGGACCCAGTTGTTCCATTTGAGTTTCCGGTGAAC
GAGGACAACCAAAAAGCTATCGAAATCAACATCAACAACAACAACAACTA
CAACAACAACAACAACGTGCCTACAAATTTCGATGAATTCATGGCGGCGA
GACAGAGAGCCATCAATGAACTGGCGAAAACACCCGACTTGACCTGGGCT
GAACAGGGAAAACTGTCCAAGGACATGGATGATGCCAATAACGTAAGTTT
CCTTCAACTCTATCTAGAATAGAATGCTCGAGGGCCGACAATGGCCTTTG
CTAGTGGACAGAAGGCGAGAAGCAGGGTTAATTACACTATAAAAGATTTC
CCATGGTTTTATCAACATCCCATCTGAACGATATCTCATACCAAGGAGGT
TTTATATAGAGACGCACCAGAGGTAGCCATAGCCTTTAATACAAGCTCAT
CTCAGCACGTACCGATTGTTATAGATTTTCTTCTATTCCACGCACAATTA
AAGAGTGGGGCCGAAGCCGCAAATTTGTCCTGGTTGACTGCATTTGGGCT
AACGGTCGGTGTTCTATTTGATTTGATGTTTAAATGATTCAGGGTCCCGA
CCGGGCCCCAAAGTATAATAAGCCCGGCTGCCGTATGGTGCCCCACGGGG
CCTCGTAGAGGTAACGTCCGAAAGTGCCAAAAGAAAAGCCTGTCAGCTAC
CCGGCGGGGCCCCTTTTTCCAATTGGGACCTAAGCATAACCTTGAAGTGG
ACTTCAGGTCTTGTTACACTGTGACAATGGAGTAGAAATAATCTTTTGTT
AAATGATGATGATGCAATGTACTGAGCATTACGCTTAACTTGTAAACCAG
TATTGGGAGACTATCTGTGCGCCTCTAACAATTTAGAAGAAATAAGATCT
TTTGTTAATTGATGATGTAATGTCTTATTATGTCTAGCTTGTAGTAAGAT
CAAGGTTCCGCACAGACAAACAAATTATATGTTTGACATACGCATATAGC
AATTATAAGCCTTTTCTATCTTGTATCCATTCCAGGCGCTTGTCATCTTC
ACGTTGCAGGCCCATGTTAAGGATCTGGTAGGCGAGGTTAAGAGTCTCAG
GTCGGACCTCTGTCAGATCAAAAGGGGTGAGTCTAACAACATATCCTGGG
CGTGATACCCACACCGGGTTTTGCCCAGTAGTCTTCTTCTTCTCGTGTTA
CACACTCCCTCTCCAATATTCCGCTAATGCAATTCCTCTTGGGGTCAGGG
CTTCAAGGTCCTCTCTGGTGCATGGCTCAGGTAGGAGGGGGCAGACAAGG
AGGTGTTCCATGGTCTGCTCCTGCCCGCAGTCACATGCCGTCTGTCCATC
TGGACCGAGACCCCACTTGTTCATAAGGGTCTTTACCTGTGCCTGTTCTG
AGGCGGTTGAGGCATAACCAGGTTGGCCATGCCTCCCCCGCTCCTGGAGG
AAGGGATTCCCTCGGGGGGGGTGGTGAGTTTATGTGGAGCTGTCTGGAGG
TGTTGAGACCAGTAGTATATATAGATATAGGTGCATACTGGTGCTTTATC
TTCAGCACCTGATTTTTTAAAAAGTTTGTTCAACATCATCCAAGTTGTCA
TAGATTGATTATCTACGGATGCATGAGTAGATGTACATCCGAAAATAATT
TCATCAGAACAAAGGATATTTGGAGTTTCTTTTAACACAACCAGGTAATC
TCACCTGCTGACGTTTCAGTGTCTGTCAGACACCTTCTTCAGAGCTTCTG
ACTTGAGTACTGCTTCTCACCAAGTAGATGTTACACTTCAACCTGTTTTG
ATAGGCATTGCTGTTTGTGTAAAAAGCAGAGAAATCTACATTTCTGACAG
TCTTTCTGAACAGTTCACTGCAGCTGACTTCCATTGGTTTGGGCCTTGTG
CTGCTGTAGCCAATAGTCCTCTATAAAATATTGTCATCATTTTTCTAGCT
GTTAAAGCCTGCTGCAACAAGACCCTAACCTGTCCCAGTGGGTATGAATG
GTTCTGCGAAAAGCCCGGCATGTGCTACAAGTTCGCTACAGACGAGAAGA
ACTACACCGACGCCAGTTCCACCTGTCATCAGGTTGCCGGCGGGCACCTG
GCTATGCCCAAGGACAAGGTAACAAATGACCTCCTGAGCAATCAGGTCAA
GGCCAGATACCAGGATGATGCGGTCTGGTTCGGTCTGATGAAGGGCTCAG
GTGATCATGAGTGGGTGTGGGACGACATGACACATCTCGGAAATTGGAGC
AACTGGCCAGAAAGGGCCGGCGAAACGGATCCGGAGACAAGCCCAGGATC
AAAATGTGTG

Coding sequence (CDS) from alignment at Sc0000010:4769622..4772031+

>transcript:BL83716_cuf0 ID=transcript:BL83716_cuf0|Name=transcript:BL83716_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2250bp|location=Sequence derived from alignment at Sc0000010:4769622..4772031+ (Branchiostoma lanceolatum)
ATGATGCTGAAAGTTGCCACGCTGTTTGTGATCCTCCTGGTGACCCCAAA
GGAGGCTACAGGGGAAACTGAGGACCCAGTTGTTCCATTTGAGTTTCCGG
TGAACGAGGACAACCAAAAAGCTATCGAAATCAACATCAACAACAACAAC
AACTACAACAACAACAACAACGTGCCTACAAATTTCGATGAATTCATGGC
GGCGAGACAGAGAGCCATCAATGAACTGGCGAAAACACCCGACTTGACCT
GGGCTGAACAGGGAAAACTGTCCAAGGACATGGATGATGCCAATAACGCG
CTTGTCATCTTCACGTTGCAGGCCCATGTTAAGGATCTGGTAGGCGAGGT
TAAGAGTCTCAGGTCGGACCTCTGTCAGATCAAAAGGGCTGTTAAAGCCT
GCTGCAACAAGACCCTAACCTGTCCCAGTGGGTATGAATGGTTCTGCGAA
AAGCCCGGCATGTGCTACAAGTTCGCTACAGACGAGAAGAACTACACCGA
CGCCAGTTCCACCTGTCATCAGGTTGCCGGCGGGCACCTGGCTATGCCCA
AGGACAAGGTAACAAATGACCTCCTGAGCAATCAGGTCAAGGCCAGATAC
CAGGATGATGCGGTCTGGTTCGGTCTGATGAAGGGCTCAGGTGATCATGA
GTGGGTGTGGGACGACATGACACATCTCGGAAATTGGAGCAACTGGCCAG
AAAGGGCCGGCGAAACGGATCCGGAGACAAGCCCAGGATCAAAATGTGTG
ATGATGCTGAAAGTTGCCACGCTGTTTGTGATCCTCCTGGTGACCCCAAA
GGAGGCTACAGGGGAAACTGAGGACCCAGTTGTTCCATTTGAGTTTCCGG
TGAACGAGGACAACCAAAAAGCTATCGAAATCAACATCAACAACAACAAC
AACTACAACAACAACAACAACGTGCCTACAAATTTCGATGAATTCATGGC
GGCGAGACAGAGAGCCATCAATGAACTGGCGAAAACACCCGACTTGACCT
GGGCTGAACAGGGAAAACTGTCCAAGGACATGGATGATGCCAATAACGCG
CTTGTCATCTTCACGTTGCAGGCCCATGTTAAGGATCTGGTAGGCGAGGT
TAAGAGTCTCAGGTCGGACCTCTGTCAGATCAAAAGGGCTGTTAAAGCCT
GCTGCAACAAGACCCTAACCTGTCCCAGTGGGTATGAATGGTTCTGCGAA
AAGCCCGGCATGTGCTACAAGTTCGCTACAGACGAGAAGAACTACACCGA
CGCCAGTTCCACCTGTCATCAGGTTGCCGGCGGGCACCTGGCTATGCCCA
AGGACAAGGTAACAAATGACCTCCTGAGCAATCAGGTCAAGGCCAGATAC
CAGGATGATGCGGTCTGGTTCGGTCTGATGAAGGGCTCAGGTGATCATGA
GTGGGTGTGGGACGACATGACACATCTCGGAAATTGGAGCAACTGGCCAG
AAAGGGCCGGCGAAACGGATCCGGAGACAAGCCCAGGATCAAAATGTGTG
ATGATGCTGAAAGTTGCCACGCTGTTTGTGATCCTCCTGGTGACCCCAAA
GGAGGCTACAGGGGAAACTGAGGACCCAGTTGTTCCATTTGAGTTTCCGG
TGAACGAGGACAACCAAAAAGCTATCGAAATCAACATCAACAACAACAAC
AACTACAACAACAACAACAACGTGCCTACAAATTTCGATGAATTCATGGC
GGCGAGACAGAGAGCCATCAATGAACTGGCGAAAACACCCGACTTGACCT
GGGCTGAACAGGGAAAACTGTCCAAGGACATGGATGATGCCAATAACGCG
CTTGTCATCTTCACGTTGCAGGCCCATGTTAAGGATCTGGTAGGCGAGGT
TAAGAGTCTCAGGTCGGACCTCTGTCAGATCAAAAGGGCTGTTAAAGCCT
GCTGCAACAAGACCCTAACCTGTCCCAGTGGGTATGAATGGTTCTGCGAA
AAGCCCGGCATGTGCTACAAGTTCGCTACAGACGAGAAGAACTACACCGA
CGCCAGTTCCACCTGTCATCAGGTTGCCGGCGGGCACCTGGCTATGCCCA
AGGACAAGGTAACAAATGACCTCCTGAGCAATCAGGTCAAGGCCAGATAC
CAGGATGATGCGGTCTGGTTCGGTCTGATGAAGGGCTCAGGTGATCATGA
GTGGGTGTGGGACGACATGACACATCTCGGAAATTGGAGCAACTGGCCAG
AAAGGGCCGGCGAAACGGATCCGGAGACAAGCCCAGGATCAAAATGTGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL83716gene:BL83716Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL83716_cuf0-E1BL83716_cuf0-E1-1564476830-99615Branchiostoma lanceolatumexon
BL83716_cuf0-E2BL83716_cuf0-E2-1564476830-99617Branchiostoma lanceolatumexon
BL83716_cuf0-E3BL83716_cuf0-E3-1564476830-99619Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL83716_cuf0transcript:BL83716_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:4769622..4772031 +
Properties
Property NameValue
Transcript idBL83716_cuf0
Biotypeprotein_coding