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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL83500_cuf1 >transcript:BL83500_cuf1-protein ID=transcript:BL83500_cuf1-protein|Name=transcript:BL83500_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=716bp
MPNSSHGLVLVPLLFLLIPAYSVTGQDNTRTSLQPIVTTDNPTRNESTRG
TSNVTAQTQATHSGTAADFELPEAVGAVALLLILLGASIGISRLVNYCYH
RDVDRLDFESKHAPGAQLAKKQKDDDNNKAAIAKISKRNATPFGDEDNGY
QEVRVSCGNTTTVSINGNIKSDEDSITERTLDNATLPLKCDIWTVFNQIA
PIDLAARPDGLPQTSGGSRPPLVQRYSDPIPKQQPANVFNHQPITDVLPK
DQLQDDKGSRTPKQDDQSSAQKNVFTEDETVDVLYQQPIAESLSSSSNEQ
YEVNVDTRTSQMKEQTSIHMYGTAGEDSDNALSNLPITDELYLLSKEQLT
DNTRDSSVLEPKEQWSVQIDDSAGSDRTQHNISLQEETEYDVYDVSHLVN
NYESDKSKESAATILKDKKKERKKKPKDKDKQSQDDHDISIDNRDNAMAP
VVESERATENMEDTYFTVTRPPSSKVPKTHKKKRKASKKWTSEVVLNTNV
LNDTESKYTIETNPRDFLPDVGQVNERRRKLLDLLTAERGALSPTRRHTF
TQPSLESFSACYHVVDVHREKDGTVLGLQEKTMGSHMRQKTGDHDVHNGC
HVNNGFEGHDDVFKGDKHSQTGRTDTGERRVNQSIPDINYSRLRALSMTS
SMYGKNKANQHRNLTEREQHQTCWGSGSNDSQVEIYDQQEYIKRLGQLRR
NRGSSSTKRAASCTDE Run BLAST on NCBI mRNA from alignment at Sc0000089:749753..753525+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL83500_cuf1 ID=transcript:BL83500_cuf1|Name=transcript:BL83500_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3773bp|location=Sequence derived from alignment at Sc0000089:749753..753525+ (Branchiostoma lanceolatum)
TTTCTTCCCGCGAAAGTGCACAATGACGTTATTTGTATCACTTATTCAAA
TGGCACTTGTTCATTTTCTCTACACGATCATTTCTATCATTTTGATTAAA
ATATGTCACCAATGTAAAGTAAACTGTAACAAACAGATTGAAAATAACAG
ACATATGTATACATAAAGTATTTTGCTTGCAATAGTATAATTACGTAAAT
AACCCTACATGACGGAACACCCTAGCCCAGCCTCTTGGTGACAGGTGAGC
CGGAGGCGACATATACCCTAATCCATGGAGACCTGGACAAACAATAGTAA
ACTGACAAGAAGCACGCCACGTAGTGAGGGTAGTATTAGAGACCGGGGAT
GTTGCAGTTGTCGGTCCCACGGTGGCACACAAACGTTGTTTTACCGTGAA
TAACACGTCCTAACGAAAGGTGTTGGAGTCCATGCCAAACTCTAGCCATG
GTCTGGTGTTGGTGCCGTTGCTGTTCCTGCTCATACCCGCATACTCAGTC
ACAGGTCAGACAGGTGCGTACTTGCTTTGCTTAGACTGCCCATAATGGCG
GAGTAGAATTGTTTCCCAACTATTAGGAACATCCGTTGCCGTGTACTTAG
CAGAATTCGAGTATTGATATATATTTTAGTATCACAATGATACGGAAAAT
GTTTGTATCAACACCCAGCGGAAATCATGCCCACGAATGTCTTGCTTTTC
AATCACATATGCAAACACATTATCGGAATCAGGGTCTGTTTACAAAAGGG
ATGAGTGCTCCAAATGGGCACATAAGGGACAGAATCACAATGTCTACACA
CGGTAAGGAATCACACTGACGAAGAAGGAATCGAAATTTCGAAATGCATA
GGGGTTGCATAGTGTATATGTACACCGTAAACCTTGTCGACTTGAGAAAG
TGGACAGCATGTAACATTTTATACACAATAGCACAATTTTGTACAATTTT
CACATTGTGCTTGTGCGTGAGTAATCTTACATAAGGTGTTATGCAGTTGA
ATGGTCTGTACAACTAAACACCTGGTTGAGCAATCATGTTCTTGGAAACA
ATGACTGAAACAACAAAAGAAAAGGTGATTCGCATGCCCTAGCCTAAGTT
GATGACGAAGGCAAATTTGATGTAATATGAAATGGCAATCAGAAACACGT
TCCTGGTCAGTTTTAATGAATTTTGAATGGCAACAGTTTCCTCAGATACA
AACCCCACTTATGATAATCTGCTATCACTAAGGCTTTATTCCCTTGCTTG
TTGGAGTTGTTTGAGCTCGTAATATATGTCCAGAAGTAAGAAAATAGAAA
ATAGCTAGCATACCTTTGACGCTACGTGTACTTGGGGGCTAGTGATGCTT
CTACGTGGGCGTTAAGCTTCTCGCACTATGTACCCAAGCACTAGAGGAGA
ACTTACCTAGGAAAATATTCTTGTAATAGAGACGATGGCTTTCAAATGTG
TAGGGATATTATATGCTTGTTTGTATTGCGTTGTGTTGTGTTTGAAACCT
TTTCTTACATATCAAGAAGAATACGAAACATGTCACTTAAATCCATAAAC
ACGTGTACTTGCTATTTCAACCTATAGGTCAGGACAACACCAGGACGTCA
CTACAACCTATCGTCACAACTGATAATCCTACGCGAAACGAAAGCACCAG
GGGCACAAGTAACGTGACAGCACAAACCCAGGCCACACACTCGGGAACAG
CCGCGGACTTTGAGCTGCCTGAGGCTGTCGGCGCTGTGGCCTTACTTCTG
ATTCTACTGGGAGCCAGCATCGGTATCAGCAGACTTGTCAACTACTGCTA
CCACAGAGACGTGGACAGACTGGACTTCGAGTCAAAACATGCTCCCGGTG
CTCAACTAGCGAAGAAGCAGAAAGATGACGACAACAACAAAGCCGCCATT
GCAAAAATATCCAAAAGAAACGCGACGCCTTTTGGTGATGAGGATAACGG
CTATCAAGAAGTGCGGGTGTCATGTGGAAATACCACAACTGTTTCTATCA
ATGGAAACATCAAATCGGATGAGGACAGTATTACAGAAAGAACTTTGGAC
AACGCAACTTTACCACTAAAATGCGATATTTGGACTGTTTTCAATCAAAT
TGCCCCGATTGACCTTGCGGCCCGGCCCGATGGACTCCCACAGACATCTG
GAGGAAGTCGGCCGCCTCTAGTACAGCGGTACTCTGACCCAATACCTAAG
CAGCAACCTGCTAATGTGTTCAATCATCAGCCAATAACGGACGTGCTTCC
AAAAGATCAACTCCAGGACGACAAAGGCAGTAGAACACCAAAACAGGATG
ATCAGTCATCAGCGCAGAAGAACGTCTTTACAGAAGACGAAACTGTCGAC
GTACTGTATCAACAACCAATCGCAGAGTCACTTTCTTCCTCGTCAAATGA
ACAATATGAAGTCAACGTCGACACCAGAACATCACAAATGAAAGAACAAA
CATCGATACACATGTATGGGACTGCAGGCGAAGATTCAGACAACGCTCTG
TCCAATTTGCCAATCACAGACGAGCTATATTTACTGTCCAAAGAACAACT
TACAGACAATACTAGAGACAGTAGTGTGCTAGAACCAAAGGAACAATGGT
CGGTGCAGATAGACGATAGTGCAGGTAGCGACCGCACTCAGCACAATATA
TCGTTACAAGAAGAAACTGAGTACGACGTATACGATGTTTCACATCTGGT
AAATAATTACGAATCTGACAAATCAAAAGAGTCTGCGGCCACTATTTTGA
AAGACAAGAAAAAGGAAAGGAAGAAGAAGCCAAAAGACAAAGATAAGCAG
TCACAAGATGATCATGACATTTCTATCGACAACAGGGACAATGCGATGGC
GCCGGTAGTCGAAAGTGAGAGAGCAACCGAAAACATGGAGGATACATATT
TTACGGTTACTAGACCACCAAGTTCCAAAGTACCAAAAACTCACAAGAAA
AAAAGGAAAGCAAGCAAAAAATGGACTTCAGAAGTAGTTCTAAACACAAA
TGTATTGAACGATACAGAAAGCAAATACACCATCGAGACAAATCCCAGGG
ACTTCCTTCCCGACGTAGGACAGGTTAATGAAAGGAGAAGAAAGCTCCTT
GATCTTCTAACTGCGGAGCGTGGTGCCCTGTCACCGACCAGACGACATAC
TTTCACACAACCAAGTTTAGAATCGTTCAGTGCTTGCTACCATGTCGTAG
ATGTACACAGGGAAAAGGATGGTACAGTATTGGGATTGCAAGAAAAAACG
ATGGGATCACATATGCGTCAAAAAACTGGTGATCATGATGTACATAATGG
GTGTCACGTGAACAATGGTTTTGAAGGACACGATGATGTGTTTAAGGGTG
ACAAACACTCTCAGACGGGTAGAACTGATACTGGCGAAAGAAGGGTGAAT
CAATCTATTCCAGATATCAATTACAGTCGTTTACGTGCTCTATCAATGAC
GTCATCAATGTACGGAAAGAATAAGGCGAATCAACATAGAAATTTAACTG
AAAGAGAACAGCATCAAACTTGTTGGGGTAGTGGGAGTAACGATTCTCAA
GTAGAAATCTACGATCAGCAAGAGTATATCAAGCGTCTGGGACAGTTAAG
AAGAAATAGAGGTTCATCTTCAACTAAGAGAGCGGCTAGCTGTACTGATG
AATGATGCAGTTTTAGTGCATTAGACTGAGAGTGTCCAGACCTAGCTAGA
ATTAAGTATCATAAATGAAATGTGATTGCTTTGATAATTTTTCTATTGCA
GCTTATGGATCAAAGAATTAAAC Coding sequence (CDS) from alignment at Sc0000089:749753..753525+ >transcript:BL83500_cuf1 ID=transcript:BL83500_cuf1|Name=transcript:BL83500_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4302bp|location=Sequence derived from alignment at Sc0000089:749753..753525+ (Branchiostoma lanceolatum)
ATGCCAAACTCTAGCCATGGTCTGGTGTTGGTGCCGTTGCTGTTCCTGCT
CATACCCGCATACTCAGTCACAGGTCAGGACAACACCAGGACGTCACTAC
AACCTATCGTCACAACTGATAATCCTACGCGAAACGAAAGCACCAGGGGC
ACAAGTAACGTGACAGCACAAACCCAGGCCACACACTCGGGAACAGCCGC
GGACTTTGAGCTGCCTGAGGCTGTCGGCGCTGTGGCCTTACTTCTGATTC
TACTGGGAGCCAGCATCGGTATCAGCAGACTTGTCAACTACTGCTACCAC
AGAGACGTGGACAGACTGGACTTCGAGTCAAAACATGCTCCCGGTGCTCA
ACTAGCGAAGAAGCAGAAAGATGACGACAACAACAAAGCCGCCATTGCAA
AAATATCCAAAAGAAACGCGACGCCTTTTGGTGATGAGGATAACGGCTAT
CAAGAAGTGCGGGTGTCATGTGGAAATACCACAACTGTTTCTATCAATGG
AAACATCAAATCGGATGAGGACAGTATTACAGAAAGAACTTTGGACAACG
CAACTTTACCACTAAAATGCGATATTTGGACTGTTTTCAATCAAATTGCC
CCGATTGACCTTGCGGCCCGGCCCGATGGACTCCCACAGACATCTGGAGG
AAGTCGGCCGCCTCTAGTACAGCGGTACTCTGACCCAATACCTAAGCAGC
AACCTGCTAATGTGTTCAATCATCAGCCAATAACGGACGTGCTTCCAAAA
GATCAACTCCAGGACGACAAAGGCAGTAGAACACCAAAACAGGATGATCA
GTCATCAGCGCAGAAGAACGTCTTTACAGAAGACGAAACTGTCGACGTAC
TGTATCAACAACCAATCGCAGAGTCACTTTCTTCCTCGTCAAATGAACAA
TATGAAGTCAACGTCGACACCAGAACATCACAAATGAAAGAACAAACATC
GATACACATGTATGGGACTGCAGGCGAAGATTCAGACAACGCTCTGTCCA
ATTTGCCAATCACAGACGAGCTATATTTACTGTCCAAAGAACAACTTACA
GACAATACTAGAGACAGTAGTGTGCTAGAACCAAAGGAACAATGGTCGGT
GCAGATAGACGATAGTGCAGGTAGCGACCGCACTCAGCACAATATATCGT
TACAAGAAGAAACTGAGTACGACGTATACGATGTTTCACATCTGGTAAAT
AATTACGAATCTGACAAATCAAAAGAGTCTGCGGCCACTATTTTGAAAGA
CAAGAAAAAGGAAAGGAAGAAGAAGCCAAAAGACAAAGATAAGCAGTCAC
AAGATGATCATGACATTTCTATCGACAACAGGGACAATGCGATGGCGCCG
GTAGTCGAAAGTGAGAGAGCAACCGAAAACATGGAGGATACATATTTTAC
GGTTACTAGACCACCAAGTTCCAAAGTACCAAAAACTCACAAGAAAAAAA
GGAAAGCAAGCAAAAAATGGACTTCAGAAGTAGTTCTAAACACAAATGTA
TTGAACGATACAGAAAGCAAATACACCATCGAGACAAATCCCAGGGACTT
CCTTCCCGACGTAGGACAGGTTAATGAAAGGAGAAGAAAGCTCCTTGATC
TTCTAACTGCGGAGCGTGGTGCCCTGTCACCGACCAGACGACATACTTTC
ACACAACCAAGTTTAGAATCGTTCAGTGCTTGCTACCATGTCGTAGATGT
ACACAGGGAAAAGGATGGTACAGTATTGGGATTGCAAGAAAAAACGATGG
GATCACATATGCGTCAAAAAACTGGTGATCATGATGTACATAATGGGTGT
CACGTGAACAATGGTTTTGAAGGACACGATGATGTGTTTAAGGGTGACAA
ACACTCTCAGACGGGTAGAACTGATACTGGCGAAAGAAGGGTGAATCAAT
CTATTCCAGATATCAATTACAGTCGTTTACGTGCTCTATCAATGACGTCA
TCAATGTACGGAAAGAATAAGGCGAATCAACATAGAAATTTAACTGAAAG
AGAACAGCATCAAACTTGTTGGGGTAGTGGGAGTAACGATTCTCAAGTAG
AAATCTACGATCAGCAAGAGTATATCAAGCGTCTGGGACAGTTAAGAAGA
AATAGAGGTTCATCTTCAACTAAGAGAGCGGCTAGCTGTACTGATGAATG
AATGCCAAACTCTAGCCATGGTCTGGTGTTGGTGCCGTTGCTGTTCCTGC
TCATACCCGCATACTCAGTCACAGGTCAGGACAACACCAGGACGTCACTA
CAACCTATCGTCACAACTGATAATCCTACGCGAAACGAAAGCACCAGGGG
CACAAGTAACGTGACAGCACAAACCCAGGCCACACACTCGGGAACAGCCG
CGGACTTTGAGCTGCCTGAGGCTGTCGGCGCTGTGGCCTTACTTCTGATT
CTACTGGGAGCCAGCATCGGTATCAGCAGACTTGTCAACTACTGCTACCA
CAGAGACGTGGACAGACTGGACTTCGAGTCAAAACATGCTCCCGGTGCTC
AACTAGCGAAGAAGCAGAAAGATGACGACAACAACAAAGCCGCCATTGCA
AAAATATCCAAAAGAAACGCGACGCCTTTTGGTGATGAGGATAACGGCTA
TCAAGAAGTGCGGGTGTCATGTGGAAATACCACAACTGTTTCTATCAATG
GAAACATCAAATCGGATGAGGACAGTATTACAGAAAGAACTTTGGACAAC
GCAACTTTACCACTAAAATGCGATATTTGGACTGTTTTCAATCAAATTGC
CCCGATTGACCTTGCGGCCCGGCCCGATGGACTCCCACAGACATCTGGAG
GAAGTCGGCCGCCTCTAGTACAGCGGTACTCTGACCCAATACCTAAGCAG
CAACCTGCTAATGTGTTCAATCATCAGCCAATAACGGACGTGCTTCCAAA
AGATCAACTCCAGGACGACAAAGGCAGTAGAACACCAAAACAGGATGATC
AGTCATCAGCGCAGAAGAACGTCTTTACAGAAGACGAAACTGTCGACGTA
CTGTATCAACAACCAATCGCAGAGTCACTTTCTTCCTCGTCAAATGAACA
ATATGAAGTCAACGTCGACACCAGAACATCACAAATGAAAGAACAAACAT
CGATACACATGTATGGGACTGCAGGCGAAGATTCAGACAACGCTCTGTCC
AATTTGCCAATCACAGACGAGCTATATTTACTGTCCAAAGAACAACTTAC
AGACAATACTAGAGACAGTAGTGTGCTAGAACCAAAGGAACAATGGTCGG
TGCAGATAGACGATAGTGCAGGTAGCGACCGCACTCAGCACAATATATCG
TTACAAGAAGAAACTGAGTACGACGTATACGATGTTTCACATCTGGTAAA
TAATTACGAATCTGACAAATCAAAAGAGTCTGCGGCCACTATTTTGAAAG
ACAAGAAAAAGGAAAGGAAGAAGAAGCCAAAAGACAAAGATAAGCAGTCA
CAAGATGATCATGACATTTCTATCGACAACAGGGACAATGCGATGGCGCC
GGTAGTCGAAAGTGAGAGAGCAACCGAAAACATGGAGGATACATATTTTA
CGGTTACTAGACCACCAAGTTCCAAAGTACCAAAAACTCACAAGAAAAAA
AGGAAAGCAAGCAAAAAATGGACTTCAGAAGTAGTTCTAAACACAAATGT
ATTGAACGATACAGAAAGCAAATACACCATCGAGACAAATCCCAGGGACT
TCCTTCCCGACGTAGGACAGGTTAATGAAAGGAGAAGAAAGCTCCTTGAT
CTTCTAACTGCGGAGCGTGGTGCCCTGTCACCGACCAGACGACATACTTT
CACACAACCAAGTTTAGAATCGTTCAGTGCTTGCTACCATGTCGTAGATG
TACACAGGGAAAAGGATGGTACAGTATTGGGATTGCAAGAAAAAACGATG
GGATCACATATGCGTCAAAAAACTGGTGATCATGATGTACATAATGGGTG
TCACGTGAACAATGGTTTTGAAGGACACGATGATGTGTTTAAGGGTGACA
AACACTCTCAGACGGGTAGAACTGATACTGGCGAAAGAAGGGTGAATCAA
TCTATTCCAGATATCAATTACAGTCGTTTACGTGCTCTATCAATGACGTC
ATCAATGTACGGAAAGAATAAGGCGAATCAACATAGAAATTTAACTGAAA
GAGAACAGCATCAAACTTGTTGGGGTAGTGGGAGTAACGATTCTCAAGTA
GAAATCTACGATCAGCAAGAGTATATCAAGCGTCTGGGACAGTTAAGAAG
AAATAGAGGTTCATCTTCAACTAAGAGAGCGGCTAGCTGTACTGATGAAT
GA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000089 | genome | Sc0000089:749753..753525 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL83500_cuf1 |
| Biotype | protein_coding |
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