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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL83455_cuf0 >transcript:BL83455_cuf0-protein ID=transcript:BL83455_cuf0-protein|Name=transcript:BL83455_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=780bp
NVRYLLVNNPKNPIVRGSYFRKKREFNKLIRKHKREHESNCLMELQKLQD
NNPTAFWNLLKELKKTDSTNQEDIPVDSWVEHFKTLHEKSRLKRQDFDAT
FEKVILNKLEVLQNHNQSQGPLDYLITESEVNVAIQRLKNKKASGEDMIT
NEMLKAGKTLLLRPLLNLFNNVLSSGTFPLDWSRSYIVPVFKAGRKDDPN
NYRGISISSCLGKLFTSILNKRLSNFLDENDILKPNQTGFRKNYRTSDNI
FLLKTLISKYTQSRKQLFACFVDLSKAFDSIWHGGLLYKLLSTGISGRFF
DVMKNLYSQSKASVKTNRGLSETFPVEIGVRQGCVLSPSLFNLYISDLAN
ELNTGDLDSPLLNTTKVSSLFYADDLVLLSTSQQGLQKAINTLSLYCKKW
KLSINLNKTKIMIFNKRGHLFSNFKFQLFNQNIEIVSSYSYLGVMFTTGC
TFSTAMKTLQKKALRALFSIKSTLGNSNPPISVYTKLFDACVVPILTYGA
EVWGKIGLNDNSPIEQVHLKFCKAILGVRKNASNLATRAELGRYPLWIEV
YTRIYSYYKRLVREMPKDSLQYEAFLVQQDLHRRKIPCWLSNISKILEES
GFAYLLLNKDRNTLSAQSELKQRLKDNFLQHFYSQLNSSGEKGKNGNKLR
TYKKFKITYEKEKYLDIQNSNYRRAMTKLRISDHPLQIEVGRYNQTPPNN
RMCTFCDNDCIEDEIHFILECSLYADMRRSLVSPIQLDKKYTHLKNNELF
TCIMSSKNDDIIGKLCEFVYKCFKKREETL Run BLAST on NCBI mRNA from alignment at Sc0000010:2998083..3000547- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL83455_cuf0 ID=transcript:BL83455_cuf0|Name=transcript:BL83455_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2465bp|location=Sequence derived from alignment at Sc0000010:2998083..3000547- (Branchiostoma lanceolatum)
AAAATGTGAGGTACCTTTTAGTAAACAATCCCAAAAATCCAATCGTAAGA
GGTAGTTACTTCAGAAAGAAAAGGGAATTCAACAAACTGATCCGAAAGCA
CAAAAGAGAGCATGAAAGTAATTGTCTGATGGAACTCCAAAAACTTCAAG
ACAATAACCCGACAGCTTTTTGGAATCTACTTAAAGAACTAAAGAAAACC
GACTCAACTAATCAAGAAGACATACCAGTAGATTCATGGGTGGAACATTT
TAAAACCCTTCATGAAAAATCTAGATTAAAAAGACAAGATTTTGATGCCA
CCTTTGAAAAAGTAATTCTAAACAAACTTGAAGTACTACAAAACCATAAC
CAATCCCAAGGCCCTCTAGACTATCTTATTACAGAATCAGAAGTCAATGT
TGCCATCCAAAGACTCAAGAACAAAAAAGCCAGTGGTGAGGACATGATAA
CAAATGAAATGCTAAAAGCAGGTAAAACTCTCTTACTTCGTCCTCTTTTA
AACTTGTTTAATAATGTCCTCTCAAGCGGAACCTTTCCCCTTGATTGGTC
CAGAAGCTATATTGTCCCAGTATTTAAAGCAGGGAGAAAAGATGACCCAA
ACAACTATCGAGGCATCTCCATATCAAGCTGTCTCGGAAAACTATTTACC
TCGATTCTAAACAAGAGACTATCAAACTTTCTCGACGAAAACGATATTCT
AAAACCAAACCAGACAGGATTCCGGAAGAACTACAGAACTTCAGACAACA
TATTTTTACTAAAAACCTTAATCTCTAAATATACTCAGTCAAGAAAACAG
CTGTTCGCTTGCTTTGTAGACCTCTCAAAGGCTTTTGACTCCATTTGGCA
CGGAGGTCTGCTATACAAACTTTTATCAACAGGTATATCTGGAAGATTCT
TTGATGTAATGAAAAACCTATACAGCCAATCCAAAGCCAGTGTCAAAACA
AATCGAGGTCTGAGTGAAACTTTCCCCGTCGAAATCGGAGTCAGACAAGG
CTGTGTCCTTAGTCCTTCACTATTCAATCTGTACATCAGCGATCTAGCAA
ACGAACTAAATACAGGAGATCTAGATTCCCCCCTACTAAACACAACCAAA
GTATCTAGCCTTTTCTATGCAGACGACCTTGTCCTGTTATCAACAAGCCA
ACAAGGTCTTCAAAAAGCAATAAACACTTTAAGCCTTTACTGTAAAAAAT
GGAAGTTATCAATAAACCTAAACAAAACTAAAATAATGATATTTAATAAA
AGAGGACACTTGTTCTCAAACTTTAAATTCCAATTGTTTAACCAAAACAT
AGAGATTGTATCGTCTTATAGTTATCTAGGAGTGATGTTTACAACGGGTT
GTACTTTCAGCACCGCTATGAAAACCCTGCAAAAGAAGGCTTTACGAGCC
CTCTTCAGTATTAAATCAACTCTTGGAAACAGCAATCCCCCTATATCAGT
GTACACTAAGCTATTCGATGCATGTGTAGTTCCAATATTAACTTATGGTG
CGGAGGTATGGGGCAAGATTGGACTAAACGACAACTCTCCAATTGAACAA
GTACATCTCAAATTCTGTAAAGCAATCCTGGGCGTAAGAAAAAATGCCAG
CAACCTTGCCACAAGAGCAGAGCTTGGTAGATATCCCCTCTGGATTGAAG
TGTATACTAGAATCTATTCATACTATAAAAGATTAGTTAGAGAAATGCCG
AAAGATAGCTTACAATATGAAGCTTTTTTAGTACAGCAGGACCTACATAG
GAGAAAGATACCATGCTGGCTTTCAAATATTAGTAAAATCTTGGAGGAGT
CAGGCTTTGCCTACCTTTTACTTAACAAAGACCGAAACACGCTATCCGCT
CAATCTGAACTAAAACAGAGGCTGAAAGACAACTTTCTTCAACATTTCTA
CTCACAACTTAATTCTTCTGGTGAAAAAGGGAAGAATGGAAACAAATTGA
GAACTTACAAAAAATTCAAGATTACGTATGAAAAAGAAAAATATCTAGAT
ATACAAAATTCTAACTATCGCCGAGCCATGACTAAACTAAGGATCAGCGA
TCATCCATTGCAAATTGAAGTTGGAAGGTACAACCAGACTCCACCAAATA
ACAGAATGTGTACTTTCTGTGACAATGATTGTATAGAAGATGAAATACAT
TTTATCTTAGAATGCTCACTATACGCAGACATGCGCAGATCCCTTGTAAG
TCCCATACAACTAGACAAAAAATATACGCATCTTAAAAATAACGAGCTAT
TCACATGTATCATGTCATCTAAAAACGACGATATAATTGGAAAACTATGT
GAATTTGTATACAAATGTTTCAAGAAGAGAGAAGAGACTCTGTAGATTTA
GATGGAATATATAACAATGTTCCATTTCTTTTACTTTATGTTACCTAATG
CATTTAGCCCATGCTGGGCATGAATATGCAATAAAGTTCATTGTCATTGT
CATTGTCATTGTCAT Coding sequence (CDS) from alignment at Sc0000010:2998083..3000547- >transcript:BL83455_cuf0 ID=transcript:BL83455_cuf0|Name=transcript:BL83455_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2343bp|location=Sequence derived from alignment at Sc0000010:2998083..3000547- (Branchiostoma lanceolatum)
AATGTGAGGTACCTTTTAGTAAACAATCCCAAAAATCCAATCGTAAGAGG
TAGTTACTTCAGAAAGAAAAGGGAATTCAACAAACTGATCCGAAAGCACA
AAAGAGAGCATGAAAGTAATTGTCTGATGGAACTCCAAAAACTTCAAGAC
AATAACCCGACAGCTTTTTGGAATCTACTTAAAGAACTAAAGAAAACCGA
CTCAACTAATCAAGAAGACATACCAGTAGATTCATGGGTGGAACATTTTA
AAACCCTTCATGAAAAATCTAGATTAAAAAGACAAGATTTTGATGCCACC
TTTGAAAAAGTAATTCTAAACAAACTTGAAGTACTACAAAACCATAACCA
ATCCCAAGGCCCTCTAGACTATCTTATTACAGAATCAGAAGTCAATGTTG
CCATCCAAAGACTCAAGAACAAAAAAGCCAGTGGTGAGGACATGATAACA
AATGAAATGCTAAAAGCAGGTAAAACTCTCTTACTTCGTCCTCTTTTAAA
CTTGTTTAATAATGTCCTCTCAAGCGGAACCTTTCCCCTTGATTGGTCCA
GAAGCTATATTGTCCCAGTATTTAAAGCAGGGAGAAAAGATGACCCAAAC
AACTATCGAGGCATCTCCATATCAAGCTGTCTCGGAAAACTATTTACCTC
GATTCTAAACAAGAGACTATCAAACTTTCTCGACGAAAACGATATTCTAA
AACCAAACCAGACAGGATTCCGGAAGAACTACAGAACTTCAGACAACATA
TTTTTACTAAAAACCTTAATCTCTAAATATACTCAGTCAAGAAAACAGCT
GTTCGCTTGCTTTGTAGACCTCTCAAAGGCTTTTGACTCCATTTGGCACG
GAGGTCTGCTATACAAACTTTTATCAACAGGTATATCTGGAAGATTCTTT
GATGTAATGAAAAACCTATACAGCCAATCCAAAGCCAGTGTCAAAACAAA
TCGAGGTCTGAGTGAAACTTTCCCCGTCGAAATCGGAGTCAGACAAGGCT
GTGTCCTTAGTCCTTCACTATTCAATCTGTACATCAGCGATCTAGCAAAC
GAACTAAATACAGGAGATCTAGATTCCCCCCTACTAAACACAACCAAAGT
ATCTAGCCTTTTCTATGCAGACGACCTTGTCCTGTTATCAACAAGCCAAC
AAGGTCTTCAAAAAGCAATAAACACTTTAAGCCTTTACTGTAAAAAATGG
AAGTTATCAATAAACCTAAACAAAACTAAAATAATGATATTTAATAAAAG
AGGACACTTGTTCTCAAACTTTAAATTCCAATTGTTTAACCAAAACATAG
AGATTGTATCGTCTTATAGTTATCTAGGAGTGATGTTTACAACGGGTTGT
ACTTTCAGCACCGCTATGAAAACCCTGCAAAAGAAGGCTTTACGAGCCCT
CTTCAGTATTAAATCAACTCTTGGAAACAGCAATCCCCCTATATCAGTGT
ACACTAAGCTATTCGATGCATGTGTAGTTCCAATATTAACTTATGGTGCG
GAGGTATGGGGCAAGATTGGACTAAACGACAACTCTCCAATTGAACAAGT
ACATCTCAAATTCTGTAAAGCAATCCTGGGCGTAAGAAAAAATGCCAGCA
ACCTTGCCACAAGAGCAGAGCTTGGTAGATATCCCCTCTGGATTGAAGTG
TATACTAGAATCTATTCATACTATAAAAGATTAGTTAGAGAAATGCCGAA
AGATAGCTTACAATATGAAGCTTTTTTAGTACAGCAGGACCTACATAGGA
GAAAGATACCATGCTGGCTTTCAAATATTAGTAAAATCTTGGAGGAGTCA
GGCTTTGCCTACCTTTTACTTAACAAAGACCGAAACACGCTATCCGCTCA
ATCTGAACTAAAACAGAGGCTGAAAGACAACTTTCTTCAACATTTCTACT
CACAACTTAATTCTTCTGGTGAAAAAGGGAAGAATGGAAACAAATTGAGA
ACTTACAAAAAATTCAAGATTACGTATGAAAAAGAAAAATATCTAGATAT
ACAAAATTCTAACTATCGCCGAGCCATGACTAAACTAAGGATCAGCGATC
ATCCATTGCAAATTGAAGTTGGAAGGTACAACCAGACTCCACCAAATAAC
AGAATGTGTACTTTCTGTGACAATGATTGTATAGAAGATGAAATACATTT
TATCTTAGAATGCTCACTATACGCAGACATGCGCAGATCCCTTGTAAGTC
CCATACAACTAGACAAAAAATATACGCATCTTAAAAATAACGAGCTATTC
ACATGTATCATGTCATCTAAAAACGACGATATAATTGGAAAACTATGTGA
ATTTGTATACAAATGTTTCAAGAAGAGAGAAGAGACTCTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000010 | genome | Sc0000010:2998083..3000547 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL83455_cuf0 |
| Biotype | protein_coding |
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