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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL83372_cuf0 >transcript:BL83372_cuf0-protein ID=transcript:BL83372_cuf0-protein|Name=transcript:BL83372_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=857bp
MKPPIQCTLSGEVTSXRESDQPAILGWDFCTENHVVLDTGQGILTIGDTT
VPLLTTTELVPRLCHASVCRITTIPPRAVMAVPLSLTPRNSTGTTPHNFV
GLLEPRSYEDRGLAVARTVAAADHAKSYAEVTNTTDKPITLHPDTPMGSF
WALEDDDIADYLGPSPPTPAPTPPPLNLQHSDLSPMQTEQLQKLVDTYSD
VFSTSPRDRGRTNLTSHRILTGDSPPIKQRPHRTPIHRQAEIHRQVEAML
ADDVIEPSSSPWASPVVLARKKDGSFRFCVDYRKLNQATIKDAHPLPRTD
DVIDALSGAAFFTTLDMTSGYWQVDLDPDDREKSAFTTGRGLFQFKVMAF
GLTNAPSTFQRLMELLLAGLDWRSCLAYLDDIIVFSRTFPEHLATLEEIF
QRCRTANLKLNSKKCQFARPQVRFLGHVVSKRGIQPDPANTEKVKNWPTP
TSTAEIRAFLGLASYYRKFIQNFAHIADPLVALTRKNVTFCWTNACQAAF
DSLREALVTPPVLAYPDFHRPLTLYTDASNAAVGAVLTHPDPAGERVISY
ASKTLTKQERNWSTYDRELWAIVWSVRHYSSYLAGHTFTVVTDHKPLVGG
LSPKLIANDPTGRRTRWAVELSTYQFSIVYRPGKSHCNADAMSRRPPIER
DTSSQATIPLADKDPDQTDPKVLARQRMEPEQHPSLPASEPPTSLAAAAG
NISTTKAPTTTIAAVDQQPATSTNSSDDTSVGPSLSSDNLRQAQEADPDI
AEVLQWKRGRRGRPSFNAIQHRGRYLKSLWHQYPNLTVKGGILYRRWRPA
SRLLHQRIAPKALVPAILRELHNRPLSGHLGPAKTLQRVYIRFYWPGMTQ
EVKKWCR Run BLAST on NCBI mRNA from alignment at Sc0000002:7416111..7419822- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL83372_cuf0 ID=transcript:BL83372_cuf0|Name=transcript:BL83372_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3712bp|location=Sequence derived from alignment at Sc0000002:7416111..7419822- (Branchiostoma lanceolatum)
GAGGAGGATTATGCAGTATGGCACCACAAGTTCTATCTCTACACAGTATC
TCAGAGCTATGACTACAATGCATGTTCAAAGGTGTTCCCAACTTTTCTAG
ATGGGCCAGCGTTCACATACTTCATCAGCCTGCCTCGCTCCGTCCAAGAA
GACTACTCCCAAGCCCATGAAGCATTGTCTCATGCCTTCTCGCAGGACCG
TTTCTTGTTCACATTCCAGCACCAGCTGGCATCCCGCAAACGTCAACCTG
GTGAGACCTTTACCGTGTTTGCTGCAGAACTGGAACGGCTGGTGCAACGC
GCTTACAAAGGATACGGCTCAGATGCCATAAAGGGCATGGCGCTAACCCA
CTTTATCAATGGTCTAGATGCAGATACACTGCAGCGTGTAGTTGAGGCAA
ATCCCCCTACCTTGCAGAAAGCAGTGGATGTCGCAACACTACATGAGCAA
GCAGTGCTGGCGGTCAAACAGCGTACCGGTTCCTCACCAGAGTGTGGCAC
CAATGCCATCCAACAGCGCCGCCAGGATCACCTCGAGGCTGAAGGTGCGC
CAGCTCACAGACCTACTGCAGAGCCAGCAGCTGTCATCCCCAGCACCTCG
CTCTCGTTCTCCGTACTCATCCCCAGCTCCTCGCTCTTGTTCTCAGTACT
CATCCCCAGCCCCTCGCTCTCGTTCTCCGTACAGGCCAACGGGATCATAC
GACAATCGTCCACGCTCGCCATCTCGATCACCTGATCGCCGCTCTCGCTC
ACCACGCTCAGTCCGCTTCTCATCCCCGCACAACCAGGGAAACGACAGAC
TGCTGGCTCGACGGGCCGACCACCAGTAGAACGTTCCAAGGCCCACACAT
CTTCTACCACAGCCATCCTTGATGGACATTCTACACAAGTTCTCATTGAC
ACGGGATCAGCCATATTCCTTATCGGGGAAGACCTTCGCGACACCATTCC
TTCTCTACGCCAGTCCTCCCTTACTCCCATGGTAACTCCCGCCAAATCTG
TGACTGGCCATCCACTGGATGTGCTTGGTGTTTTAGAGGTTCACCTCCGC
CTGGGCAACTATGAAACCACCCATCCAGTGCACGTTGTCCGGGGAAGTGA
CCAGCCANCGGGAAAGTGACCAGCCAGCCATTCTCGGCTGGGACTTCTGC
ACTGAGAACCATGTTGTCCTCGATACCGGACAGGGGATACTTACCATAGG
GGATACAACAGTGCCCTTGCTAACGACAACTGAACTCGTCCCACGACTCT
GTCATGCATCTGTCTGCCGAATCACCACTATTCCGCCTCGCGCAGTCATG
GCTGTTCCATTGTCCCTAACACCTCGGAACTCCACTGGCACCACGCCCCA
CAACTTCGTCGGCTTGCTCGAGCCACGTAGCTACGAGGACAGGGGTTTGG
CCGTAGCACGGACAGTTGCGGCAGCCGACCATGCCAAGTCGTATGCCGAG
GTCACCAACACCACTGACAAACCTATTACACTACACCCAGACACACCCAT
GGGCTCCTTCTGGGCCCTCGAGGATGATGACATCGCAGACTATTTAGGCC
CATCCCCTCCCACACCGGCTCCAACACCTCCGCCCCTCAATCTCCAGCAC
TCTGATCTCTCCCCAATGCAGACGGAGCAACTGCAAAAGCTGGTAGACAC
TTACTCTGATGTCTTCAGCACTTCCCCTAGGGATAGGGGCCGTACTAACC
TGACTTCTCACCGGATCCTCACCGGGGACAGCCCGCCTATCAAACAACGA
CCTCACCGTACGCCCATCCACCGCCAAGCTGAAATCCATCGACAAGTGGA
GGCCATGCTCGCAGACGATGTTATCGAGCCAAGCAGCAGCCCATGGGCCT
CTCCGGTGGTGTTAGCCCGGAAAAAGGATGGCTCATTTCGTTTCTGCGTT
GATTACCGCAAATTGAATCAGGCAACAATCAAAGATGCACATCCCCTACC
CAGGACTGATGATGTTATCGACGCATTGTCCGGTGCCGCATTCTTCACCA
CACTGGACATGACCTCAGGTTACTGGCAAGTTGACCTTGACCCTGATGAC
CGTGAAAAGTCAGCATTCACGACAGGACGCGGCCTCTTCCAGTTCAAGGT
CATGGCCTTCGGNCCTTAACCCTGATGACCGTGAAAAGTCAGCATTCACG
ACAGGACGCGGCCTCTTCCAGTTCAAGGTCATGGCCTTCGGACTTACGAA
TGCGCCATCGACCTTTCAACGCCTGATGGAGCTTCTCCTCGCTGGGCTAG
ACTGGCGCTCCTGCTTAGCATACTTGGACGACATCATTGTGTTCTCACGG
ACCTTCCCAGAACACTTGGCCACCTTGGAAGAGATCTTCCAACGCTGTCG
TACAGCCAACCTTAAGCTCAACTCCAAGAAATGCCAGTTCGCACGACCGC
AAGTCCGTTTCCTCGGCCATGTTGTCTCTAAACGAGGAATCCAACCCGAC
CCGGCCAACACGGAGAAAGTCAAGAACTGGCCAACCCCAACATCTACAGC
TGAGATCAGGGCTTTTCTGGGCCTGGCATCTTACTACAGGAAATTCATCC
AGAATTTTGCCCACATCGCAGACCCCTTGGTTGCATTGACGAGGAAGAAC
GTTACATTCTGCTGGACCAATGCCTGCCAAGCAGCATTTGACTCCTTGCG
AGAAGCCCTCGTTACCCCGCCAGTGTTAGCATACCCGGACTTCCATCGCC
CTCTCACATTATACACAGATGCCTCAAACGCGGCTGTGGGGGCTGTCTTG
ACTCATCCAGATCCAGCAGGGGAACGAGTGATCTCCTACGCCAGCAAAAC
TCTCACCAAACAGGAGCGTAACTGGTCTACATATGACAGAGAGCTATGGG
CCATCGTCTGGAGTGTTCGCCATTACAGCTCCTACTTGGCTGGACATACG
TTTACTGTTGTCACCGATCACAAGCCACTCGTCGGTGGCCTGAGCCCTAA
GCTTATTGCCAACGACCCCACTGGCCGACGTACAAGATGGGCCGTTGAGC
TTTCCACCTATCAGTTTAGCATCGTCTACCGGCCCGGAAAGTCTCACTGC
AATGCGGATGCCATGTCTCGCCGCCCTCCAATAGAGAGAGACACCAGCTC
TCAGGCGACCATTCCCCTTGCCGACAAGGACCCTGACCAAACGGATCCAA
AGGTACTAGCACGGCAACGCATGGAGCCAGAGCAGCATCCCAGCCTGCCT
GCAAGTGAGCCACCCACATCGCTTGCGGCCGCAGCAGGAAACATATCCAC
AACTAAGGCACCGACAACCACAATCGCAGCGGTTGACCAGCAACCAGCAA
CGTCAACCAACTCGTCAGATGACACTTCAGTGGGACCGTCCCTGTCGTCC
GATAATCTGCGTCAAGCACAAGAAGCAGACCCTGACATAGCGGAAGTCCT
TCAGTGGAAACGCGGTCGACGGGGCCGACCTTCTTTCAATGCCATTCAGC
ACAGAGGACGTTACCTAAAGTCCCTGTGGCACCAGTATCCTAACTTGACT
GTCAAGGGCGGTATACTATACCGCCGATGGAGACCCGCGTCTCGCCTACT
ACACCAGCGGATTGCACCCAAGGCCTTAGTGCCTGCCATCCTAAGAGAGC
TACACAACAGACCTCTCTCTGGCCACCTGGGACCAGCCAAGACCCTTCAA
CGGGTATACATTCGCTTCTATTGGCCCGGGATGACTCAGGAAGTAAAAAA
GTGGTGTAGGGC Coding sequence (CDS) from alignment at Sc0000002:7416111..7419822- >transcript:BL83372_cuf0 ID=transcript:BL83372_cuf0|Name=transcript:BL83372_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=5142bp|location=Sequence derived from alignment at Sc0000002:7416111..7419822- (Branchiostoma lanceolatum)
ATGAAACCACCCATCCAGTGCACGTTGTCCGGGGAAGTGACCAGCCANCG
GGAAAGTGACCAGCCAGCCATTCTCGGCTGGGACTTCTGCACTGAGAACC
ATGTTGTCCTCGATACCGGACAGGGGATACTTACCATAGGGGATACAACA
GTGCCCTTGCTAACGACAACTGAACTCGTCCCACGACTCTGTCATGCATC
TGTCTGCCGAATCACCACTATTCCGCCTCGCGCAGTCATGGCTGTTCCAT
TGTCCCTAACACCTCGGAACTCCACTGGCACCACGCCCCACAACTTCGTC
GGCTTGCTCGAGCCACGTAGCTACGAGGACAGGGGTTTGGCCGTAGCACG
GACAGTTGCGGCAGCCGACCATGCCAAGTCGTATGCCGAGGTCACCAACA
CCACTGACAAACCTATTACACTACACCCAGACACACCCATGGGCTCCTTC
TGGGCCCTCGAGGATGATGACATCGCAGACTATTTAGGCCCATCCCCTCC
CACACCGGCTCCAACACCTCCGCCCCTCAATCTCCAGCACTCTGATCTCT
CCCCAATGCAGACGGAGCAACTGCAAAAGCTGGTAGACACTTACTCTGAT
GTCTTCAGCACTTCCCCTAGGGATAGGGGCCGTACTAACCTGACTTCTCA
CCGGATCCTCACCGGGGACAGCCCGCCTATCAAACAACGACCTCACCGTA
CGCCCATCCACCGCCAAGCTGAAATCCATCGACAAGTGGAGGCCATGCTC
GCAGACGATGTTATCGAGCCAAGCAGCAGCCCATGGGCCTCTCCGGTGGT
GTTAGCCCGGAAAAAGGATGGCTCATTTCGTTTCTGCGTTGATTACCGCA
AATTGAATCAGGCAACAATCAAAGATGCACATCCCCTACCCAGGACTGAT
GATGTTATCGACGCATTGTCCGGTGCCGCATTCTTCACCACACTGGACAT
GACCTCAGGTTACTGGCAAGTTGACCTTGACCCTGATGACCGTGAAAAGT
CAGCATTCACGACAGGACGCGGCCTCTTCCAGTTCAAGGTCATGGCCTTC
GGACTTACGAATGCGCCATCGACCTTTCAACGCCTGATGGAGCTTCTCCT
CGCTGGGCTAGACTGGCGCTCCTGCTTAGCATACTTGGACGACATCATTG
TGTTCTCACGGACCTTCCCAGAACACTTGGCCACCTTGGAAGAGATCTTC
CAACGCTGTCGTACAGCCAACCTTAAGCTCAACTCCAAGAAATGCCAGTT
CGCACGACCGCAAGTCCGTTTCCTCGGCCATGTTGTCTCTAAACGAGGAA
TCCAACCCGACCCGGCCAACACGGAGAAAGTCAAGAACTGGCCAACCCCA
ACATCTACAGCTGAGATCAGGGCTTTTCTGGGCCTGGCATCTTACTACAG
GAAATTCATCCAGAATTTTGCCCACATCGCAGACCCCTTGGTTGCATTGA
CGAGGAAGAACGTTACATTCTGCTGGACCAATGCCTGCCAAGCAGCATTT
GACTCCTTGCGAGAAGCCCTCGTTACCCCGCCAGTGTTAGCATACCCGGA
CTTCCATCGCCCTCTCACATTATACACAGATGCCTCAAACGCGGCTGTGG
GGGCTGTCTTGACTCATCCAGATCCAGCAGGGGAACGAGTGATCTCCTAC
GCCAGCAAAACTCTCACCAAACAGGAGCGTAACTGGTCTACATATGACAG
AGAGCTATGGGCCATCGTCTGGAGTGTTCGCCATTACAGCTCCTACTTGG
CTGGACATACGTTTACTGTTGTCACCGATCACAAGCCACTCGTCGGTGGC
CTGAGCCCTAAGCTTATTGCCAACGACCCCACTGGCCGACGTACAAGATG
GGCCGTTGAGCTTTCCACCTATCAGTTTAGCATCGTCTACCGGCCCGGAA
AGTCTCACTGCAATGCGGATGCCATGTCTCGCCGCCCTCCAATAGAGAGA
GACACCAGCTCTCAGGCGACCATTCCCCTTGCCGACAAGGACCCTGACCA
AACGGATCCAAAGGTACTAGCACGGCAACGCATGGAGCCAGAGCAGCATC
CCAGCCTGCCTGCAAGTGAGCCACCCACATCGCTTGCGGCCGCAGCAGGA
AACATATCCACAACTAAGGCACCGACAACCACAATCGCAGCGGTTGACCA
GCAACCAGCAACGTCAACCAACTCGTCAGATGACACTTCAGTGGGACCGT
CCCTGTCGTCCGATAATCTGCGTCAAGCACAAGAAGCAGACCCTGACATA
GCGGAAGTCCTTCAGTGGAAACGCGGTCGACGGGGCCGACCTTCTTTCAA
TGCCATTCAGCACAGAGGACGTTACCTAAAGTCCCTGTGGCACCAGTATC
CTAACTTGACTGTCAAGGGCGGTATACTATACCGCCGATGGAGACCCGCG
TCTCGCCTACTACACCAGCGGATTGCACCCAAGGCCTTAGTGCCTGCCAT
CCTAAGAGAGCTACACAACAGACCTCTCTCTGGCCACCTGGGACCAGCCA
AGACCCTTCAACGGGTATACATTCGCTTCTATTGGCCCGGGATGACTCAG
GAAGTAAAAAAGTGGTGTAGGATGAAACCACCCATCCAGTGCACGTTGTC
CGGGGAAGTGACCAGCCANCGGGAAAGTGACCAGCCAGCCATTCTCGGCT
GGGACTTCTGCACTGAGAACCATGTTGTCCTCGATACCGGACAGGGGATA
CTTACCATAGGGGATACAACAGTGCCCTTGCTAACGACAACTGAACTCGT
CCCACGACTCTGTCATGCATCTGTCTGCCGAATCACCACTATTCCGCCTC
GCGCAGTCATGGCTGTTCCATTGTCCCTAACACCTCGGAACTCCACTGGC
ACCACGCCCCACAACTTCGTCGGCTTGCTCGAGCCACGTAGCTACGAGGA
CAGGGGTTTGGCCGTAGCACGGACAGTTGCGGCAGCCGACCATGCCAAGT
CGTATGCCGAGGTCACCAACACCACTGACAAACCTATTACACTACACCCA
GACACACCCATGGGCTCCTTCTGGGCCCTCGAGGATGATGACATCGCAGA
CTATTTAGGCCCATCCCCTCCCACACCGGCTCCAACACCTCCGCCCCTCA
ATCTCCAGCACTCTGATCTCTCCCCAATGCAGACGGAGCAACTGCAAAAG
CTGGTAGACACTTACTCTGATGTCTTCAGCACTTCCCCTAGGGATAGGGG
CCGTACTAACCTGACTTCTCACCGGATCCTCACCGGGGACAGCCCGCCTA
TCAAACAACGACCTCACCGTACGCCCATCCACCGCCAAGCTGAAATCCAT
CGACAAGTGGAGGCCATGCTCGCAGACGATGTTATCGAGCCAAGCAGCAG
CCCATGGGCCTCTCCGGTGGTGTTAGCCCGGAAAAAGGATGGCTCATTTC
GTTTCTGCGTTGATTACCGCAAATTGAATCAGGCAACAATCAAAGATGCA
CATCCCCTACCCAGGACTGATGATGTTATCGACGCATTGTCCGGTGCCGC
ATTCTTCACCACACTGGACATGACCTCAGGTTACTGGCAAGTTGACCTTG
ACCCTGATGACCGTGAAAAGTCAGCATTCACGACAGGACGCGGCCTCTTC
CAGTTCAAGGTCATGGCCTTCGGACTTACGAATGCGCCATCGACCTTTCA
ACGCCTGATGGAGCTTCTCCTCGCTGGGCTAGACTGGCGCTCCTGCTTAG
CATACTTGGACGACATCATTGTGTTCTCACGGACCTTCCCAGAACACTTG
GCCACCTTGGAAGAGATCTTCCAACGCTGTCGTACAGCCAACCTTAAGCT
CAACTCCAAGAAATGCCAGTTCGCACGACCGCAAGTCCGTTTCCTCGGCC
ATGTTGTCTCTAAACGAGGAATCCAACCCGACCCGGCCAACACGGAGAAA
GTCAAGAACTGGCCAACCCCAACATCTACAGCTGAGATCAGGGCTTTTCT
GGGCCTGGCATCTTACTACAGGAAATTCATCCAGAATTTTGCCCACATCG
CAGACCCCTTGGTTGCATTGACGAGGAAGAACGTTACATTCTGCTGGACC
AATGCCTGCCAAGCAGCATTTGACTCCTTGCGAGAAGCCCTCGTTACCCC
GCCAGTGTTAGCATACCCGGACTTCCATCGCCCTCTCACATTATACACAG
ATGCCTCAAACGCGGCTGTGGGGGCTGTCTTGACTCATCCAGATCCAGCA
GGGGAACGAGTGATCTCCTACGCCAGCAAAACTCTCACCAAACAGGAGCG
TAACTGGTCTACATATGACAGAGAGCTATGGGCCATCGTCTGGAGTGTTC
GCCATTACAGCTCCTACTTGGCTGGACATACGTTTACTGTTGTCACCGAT
CACAAGCCACTCGTCGGTGGCCTGAGCCCTAAGCTTATTGCCAACGACCC
CACTGGCCGACGTACAAGATGGGCCGTTGAGCTTTCCACCTATCAGTTTA
GCATCGTCTACCGGCCCGGAAAGTCTCACTGCAATGCGGATGCCATGTCT
CGCCGCCCTCCAATAGAGAGAGACACCAGCTCTCAGGCGACCATTCCCCT
TGCCGACAAGGACCCTGACCAAACGGATCCAAAGGTACTAGCACGGCAAC
GCATGGAGCCAGAGCAGCATCCCAGCCTGCCTGCAAGTGAGCCACCCACA
TCGCTTGCGGCCGCAGCAGGAAACATATCCACAACTAAGGCACCGACAAC
CACAATCGCAGCGGTTGACCAGCAACCAGCAACGTCAACCAACTCGTCAG
ATGACACTTCAGTGGGACCGTCCCTGTCGTCCGATAATCTGCGTCAAGCA
CAAGAAGCAGACCCTGACATAGCGGAAGTCCTTCAGTGGAAACGCGGTCG
ACGGGGCCGACCTTCTTTCAATGCCATTCAGCACAGAGGACGTTACCTAA
AGTCCCTGTGGCACCAGTATCCTAACTTGACTGTCAAGGGCGGTATACTA
TACCGCCGATGGAGACCCGCGTCTCGCCTACTACACCAGCGGATTGCACC
CAAGGCCTTAGTGCCTGCCATCCTAAGAGAGCTACACAACAGACCTCTCT
CTGGCCACCTGGGACCAGCCAAGACCCTTCAACGGGTATACATTCGCTTC
TATTGGCCCGGGATGACTCAGGAAGTAAAAAAGTGGTGTAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000002 | genome | Sc0000002:7416111..7419822 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL83372_cuf0 |
| Biotype | protein_coding |
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