transcript:BL82638_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL82638_cuf0
Unique Nametranscript:BL82638_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL82638_cuf0

>transcript:BL82638_cuf0-protein ID=transcript:BL82638_cuf0-protein|Name=transcript:BL82638_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=188bp
TSDGRRIGAQMLSDREDVQAILKSDEGYRFLQPVRGTPQFWEKTLNELYA
MIRQIGIPTWFVTFSAADLRWPEVLEAIRQDRGTVPVSELTWEERCDILK
SNPVTAARMFDHRVKLLFKHLIQSQSQPIGEVVETFTRTGFQVRGSPHIH
CLLWVKDAPKLNVNSEEEICSFVDRYVCSQLPDSEADK
Run BLAST on NCBI

mRNA from alignment at Sc0000065:752294..752858-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL82638_cuf0 ID=transcript:BL82638_cuf0|Name=transcript:BL82638_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=565bp|location=Sequence derived from alignment at Sc0000065:752294..752858- (Branchiostoma lanceolatum)
CACAAGTGACGGGCGTAGAATAGGGGCCCAAATGTTGTCCGACAGAGAGG
ACGTACAGGCCATTCTTAAGTCAGATGAAGGCTATCGCTTCCTTCAGCCA
GTCAGGGGTACTCCACAATTCTGGGAAAAGACGCTCAATGAATTGTACGC
AATGATCAGGCAGATTGGAATTCCCACGTGGTTCGTGACTTTTTCTGCAG
CGGACTTGCGGTGGCCAGAAGTCTTGGAAGCAATTCGACAAGATCGTGGT
ACCGTACCAGTGAGCGAGTTGACGTGGGAAGAGCGTTGTGACATTTTGAA
GAGTAATCCAGTCACTGCTGCTCGCATGTTCGATCACAGAGTCAAGCTGC
TTTTCAAACATCTCATTCAGTCTCAGTCGCAACCCATAGGGGAGGTTGTA
GAGACTTTTACAAGAACTGGGTTCCAGGTTCGCGGCAGTCCACACATACA
TTGCTTGTTGTGGGTTAAAGATGCGCCGAAATTGAACGTAAATTCTGAAG
AGGAGATATGTTCCTTTGTGGACAGGTATGTGTGCAGTCAGCTACCCGAC
TCAGAGGCAGATAAA

Coding sequence (CDS) from alignment at Sc0000065:752294..752858-

>transcript:BL82638_cuf0 ID=transcript:BL82638_cuf0|Name=transcript:BL82638_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=564bp|location=Sequence derived from alignment at Sc0000065:752294..752858- (Branchiostoma lanceolatum)
ACAAGTGACGGGCGTAGAATAGGGGCCCAAATGTTGTCCGACAGAGAGGA
CGTACAGGCCATTCTTAAGTCAGATGAAGGCTATCGCTTCCTTCAGCCAG
TCAGGGGTACTCCACAATTCTGGGAAAAGACGCTCAATGAATTGTACGCA
ATGATCAGGCAGATTGGAATTCCCACGTGGTTCGTGACTTTTTCTGCAGC
GGACTTGCGGTGGCCAGAAGTCTTGGAAGCAATTCGACAAGATCGTGGTA
CCGTACCAGTGAGCGAGTTGACGTGGGAAGAGCGTTGTGACATTTTGAAG
AGTAATCCAGTCACTGCTGCTCGCATGTTCGATCACAGAGTCAAGCTGCT
TTTCAAACATCTCATTCAGTCTCAGTCGCAACCCATAGGGGAGGTTGTAG
AGACTTTTACAAGAACTGGGTTCCAGGTTCGCGGCAGTCCACACATACAT
TGCTTGTTGTGGGTTAAAGATGCGCCGAAATTGAACGTAAATTCTGAAGA
GGAGATATGTTCCTTTGTGGACAGGTATGTGTGCAGTCAGCTACCCGACT
CAGAGGCAGATAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL82638gene:BL82638Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL82638_cuf0-E1BL82638_cuf0-E1-1564476830-254954Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL82638_cuf0transcript:BL82638_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000065genomeSc0000065:752294..752858 -
Properties
Property NameValue
Transcript idBL82638_cuf0
Biotypeprotein_coding