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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82342_cuf5 >transcript:BL82342_cuf5-protein ID=transcript:BL82342_cuf5-protein|Name=transcript:BL82342_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=330bp
MGLDRQTTLFVLLGGVVGTVVMTTWCLCNRMNRPMRMLNTVVPFSDFRSV
VSKHLRPSRNFIDFSYFDDTLARCEQESTLLSRCEGPTPIGRYRSCAVVG
HGASLSEGSCEDAIRRHDFVIRCNLPPSDDHSTNVGQKRNLTIVCFETLK
KLDENILLRNKQTNGNSHSNLNFPSLLNKLRQLQTLVIGYIGDFEPYAYG
AGRAKHDMCLSINDVMKAVTIQATLTFSMEPLRDVSKRILREFNIRLQEP
PSPSLVSVLLALSFCDSVSFYGNTTSGNDHFNEQLFNYNEVKLLHFRKAQ
NILLDQYHLLQKLHDQGDIQLVGSCKDFGV Run BLAST on NCBI mRNA from alignment at Sc0000007:7300512..7307353- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82342_cuf5 ID=transcript:BL82342_cuf5|Name=transcript:BL82342_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=6842bp|location=Sequence derived from alignment at Sc0000007:7300512..7307353- (Branchiostoma lanceolatum)
GCGCAGTTTCCTGTTAGCACAGGCGGGTACGTAAGGGTCCTACTGTACGT
GAATCTATGACATAGAACTGGGCGCTAAAGTCTCGACTAGTCACGTACTG
TAATTCTTAAGCTTGTTTCTTTCACTGTAACTTTATGTTCACTGTTTTCA
CGGTCATCTCTGTACCGTTAACTTATCATCACCGTAAAAAAACAAATCAG
TTCTGTAAATCATCTGCCGCCACCGTGAAGTTAAAGTTCAGTGAAAATGT
CCATTTTCCTTAAACCGTGAAATTTTGCTACCGTGAAGATAAAGTGAATT
ACAAAGTATGTATGCCGTGGAAGACGAAATACACTTTATTTCAAACTGTT
CATTTCATGATAATGCACGAAATGAGTTGTCTATCCAGACCACTAAAATC
TATCCGAATTTCCCTAAGCTTACAGACAAAGAAAAGACTATTCTTCTTTT
AACTACCAAAAACCCACAAATTATAGAAAAGGTGGGACATTACGTCTTCC
ATTGCTTACTGGCTTACAAAAGAGAAGTCAAACCCTTCACTAGTTATAGA
CAATTACATTTGTATAATTTAGATAAGCAGCTTTTATACCTATTTTGTAC
ACTGTTCTTTTATGTATGTTATTTGCATTTAGCCTTCGGGCATGAATTTG
CAATAAACTTATTATTAGTTATAAACTATTAGATTTTAGAGTGAACGGTG
GAAAGTCGTGAAACGTTTTGATATTTGATCAGAACTTTTAGATATTTCAC
ACAAAAAGCACACTAAATCTTTGAAATAAAAAAAAACGATACTCCTTTAT
ATACGACGAAACCAAATTCTATGTGTAGCTATTTGCATAATCTTCAAGCA
GATGTAGGGTACAGCTCATCGATTTACGCGTGCATGTTTTTTTGTGTGTT
TTTTTTTTTCAAATCTTTCCATGTTTTCTTCACCTAGCCCCGAGACCACT
AGCTTTAAGGGGTATAAAGAAAAAAAGATTATAAACGTGTAAAACACTTG
GCTGGAGATTATATATTATCTTTGCGTACATATACACGTCACACATAAAA
GATGCCCATGCGTAAACACCCGGTCCAACAGGTTGATGACGCCACGAGGG
TCAGAGAAAAACTGTCAAATTACTTGGCGCCTGCGATTCGTGGCAAGTGG
TAGACAAATTGGATGACTGGTATGTTGTTATTTCTTTGAGGAAACATTTG
GATCATTTGCAAGGTAATTAGCTTGTTAGCATTGGAGACGTCATATTGGT
GTAAATCATTAGATGAATCAAGCCCAGAATACATTTATTGTGATTTCACG
ATAACATTATTCCCAGGTTTACGTTTAATACGATCTAATAATCAACTTAT
AACTATGAAGAAAATACATAGAAAAGAGGCGACTTTTTCAAAACCAGACG
AACGTATGTAAGTTGTTTATACCCATGATCTTCATTTCATGATCTTGCAC
TACGTACATGTTGATAACTCAATCATGCAATGTTCTCGTGTGTTTCATGA
AATTGTATGCTGCAGTGGTGATACAGGCCGTTATGTGGCGCTGCCGACTA
TGCACCGTGAGACGCCTTCTTGGCATACTGGTACTTTTCTGTGCCGCCAA
CATGGCTTGGATGTTCTTCTATTTAAAAGACATGTAAGGTTTAGCATTAA
CATTATCTTGTGCTATATCCAAATACAGCTAAAATTGATATAATCATTCT
CCAAAGCCAAGTGAATTAAAGAAATGTTAGAATGCCACTTCTATGATATT
TCATAATTACTCTCTGAGCAGAAGTTACACTCCGACTGTTTTTTTGGCAT
TTTTTCATGCGTTTTTGTCGGGATTTCTATTTTGTCAGGTTTTCTTTTTA
TCCGCCTATTGCAAGATACCAAAAAATTAGTACATCTGCTTGGAGAGTAG
TATTTCATAGCGAGGCAACTTGTTTCTTTTCGAAGGGCTCCAATCAATCG
AGACGAAGTGAATATTTCAGGCCGTCTGCTGAGCAATGTCACCGTAGCGG
CCTCCCTCCCCACTCCAGATATTCAGTATCTCAACATGTTGAACAGACTG
CCTATTGAACCACGGAGCCTTAAAATAACGCAAGGAAAGAAGTCTGTTGC
AAAAATGATAAGGTGACAACAATTTTTCTATGTTTTTGATATTCATATGC
AGTTGGAAAATAAATGTGTTGGTAGCGACCATCGTCATATTCTGATAGCT
GAAATTTGGAATCATCATTTGAAACAAGTAACAGTAGATATATAGAAAAG
AGACCATTTTTTCAATGTTCTAAAACGTATAATGATTTTCATCCTAATTT
CATGTTTATTGATTACCAAGATTTTTTTCTTCTTTTGAAGTTTGATGTTT
CTATATCTTCTATTTGTTCTTCTTAAGTTGAAATATTGGCAACAGAGAAC
AGTGATCGTTTGGGTATAAGTTAGAAAAAATGTTTTGAAGCAGAGGTAAA
AATTGACAAGATTTTTGTCATCTTTACACAGAGATAAGATACAACATCTG
CTAAGTCCACGTCAGAACATGGTGCTTTTCTCCGAATTCGATGCTAATTT
CGAACGCTGCAACCTATCACAAGTACCCGAAAAAAACTGCTTCGGCACAA
CACCCATGAAGCACCACAACGCATGCGCAGTTGTCGGCAGCAGTGGTATC
CTTCTCAACAGCTCCTGCGGGAACGAGATCGACTCCCACGACTACGTCAT
ACGCTTCAATCTCGTTCCCTTGATAAAGCACGCAAGGGATGCCGGGATGA
AGTCGAACTTGACCGTCATGAACGTGTACCGGATGAGGGTCATGGTCAAG
AGAATGGAAAGTGGAAGCAGAAGAGCTTGGGAACGATTCGAGAGGATAAA
CAATTCTATGATCATATATCCCAAAAGGTTGAGTCGAACAGCGTACCAAT
ACAGGAGGTATTCGGAACTACTGGAGCTTTTAAGGAACAGATCTAGAATT
GCTACGAAGAAGAAAAGAAAGGTCTACCTGCCGCTACTGTACTCCATAAC
AGACATTAGGAACTTAACAACAGAGTAAGTATTCTGATTTTGAATCTAAC
AGAAAATATGGTTTAAGGAAAATTCAAGATAGAATTGAAAGAAGAATTGA
AAATAAGGAATTGAGGTTGGAAAACAAATTACAAAAAAAGTTTTTTCTTC
TTCTATATTTCAGCTTCATCAACGAGATATATGATTACCCAGGATTCCAT
TCACCGACCATCGGCCTGTTGACGTCATTCCTCGCATTGTCGTTCTGTGA
TCACGTGTCACTCTACGGCTTCTATCCCCTAGCAACGGACGCCAACAACA
GAACTGTGAAATTTCATTACCATGACGACCCGTTACCAGGGGAGGGCAAA
ATTCTTAAGCCGCACATCTTTAATGTAGAATATGACTTCATGAGGAATTT
ACATAGAGTAGGCGTATGGGACCATAAAATTACAAACTGTGCTTAACATT
TTAGGCCAAAAACGTTTTTGAGCAAAAATGGTTCTTGCGACTTTCTTTCA
GAATCTATTTCGAAAACCTCTAGATTGTTATGTTATCTAAAAAGGTATTG
GTGTGCGTAGTTTGGGGACTTTGGCCTACTATGCAGTACGAAAGAAACGG
TAACATGCAAAGTCAGACACTTTCTTTCACTTCTTATGATCACAATTAAA
TACGCATTCATGCTTTATATTGAGAACTTAGAATACGCATTGTAATGGTT
AATTTGTGTGTATGCCCGTGTGTGAGCGTGTGCAAGCAGTAACAGGTGGT
TATACAGCGAGCGACCCTACTGCCTATATCAAGAATAGCACCCTGATGGA
CAACATGCGCTCTTTGCTCAATTACACACACACAGGCCAATTCTTCATGC
CTGACAGAAACGATGGGCAGTGCTTTGTTGATGAGAAGAAAAACCAGTTA
CGAAGGTGTTGTCGTGGTGCACTTTAACCTTTGACATATGACGTAATAAT
CATGGTGGACAGTTGATGACGAAAACAACAACAACATCTACAAAGTAACA
TATGGTTTCCCAATGAATTGCACTACAACTACTATTCTTCGAACATCAAA
AACAAGGTTGGCCTATGTGTATTTCAACAATTTTAATCTCGTTTTGACTT
CGATAATCACTTTGTTGTTAAAAAATGTTCATAGTACAACGAAGAAGGGA
GTAAATTAAAATGACACCAAATGAAAGTTTAAGACAAGTCGTACACAAGA
GAACTTGATAGCTAGATCTTACATATACTATACCATCGTGACTATAGCCT
CTTGCCTAGTATTTTAATACACATGAGTCATTTACACAGTAAAAACAGAT
ATGACATACTAATAATATGATTCGTCTTGCTACAGGTGAAAAGATGGGCT
TGGACCGACAGACGACATTGTTTGTTTTACTGGGCGGGGTTGTTGGTACG
GTCGTCATGACAACATGGTGCTTATGCAATAGGATGAATAGACCAATGCG
AATGTTGAATACAGTCGTCCCATTTTCTGACTTCAGGTAAAATATGTAAC
AATTGCATTAGCGATATGAATATTAACATTCAGTCGTGCGAAGCGTTCAA
AGGTAGTTTGTTGGTATACAATGTGAAAATATAATTCTGTTATCATGTTG
CGCATTATAATCTAAAAAATGGTACTATATGGGTATTATGAGGAACAAAG
AAATGACAAGACAGCTCCTTGGGTAAATCTGCAAGATACTAACGTTATAG
TTCGTTTCAAACTCTACAACTGGATAAAAAAAAAACGGACGTTTCGAGTG
ACATCTATCACTCTTCTTCAGCGTCATAAGAGTCTTGAAACGTCCGGAAG
TAAATTTCCGAATTTCATCCAGTTTTAGAATTGTCTTTATACATTGCTTA
CCAGGATGTCTAAACTTCATAAACGTAACGATATATAAATCATTAAAGAC
GCAAGTCGTGATTTATGACATATGAGCCATACTTCTTCTTTTTCAGGTCC
GTTGTTTCAAAACACCTTAGACCTTCTCGCAACTTCATCGACTTCTCGTA
CTTTGACGATACTCTCGCGAGATGTGAGCAGGAATCGACGCTGCTCTCCC
GGTGCGAAGGACCGACTCCCATTGGTCGATACCGCTCATGCGCAGTAGTT
GGCCATGGCGCATCACTTTCGGAAGGCAGTTGTGAAGATGCCATTCGTAG
ACACGACTTCGTCATCAGATGTAACCTTCCTCCAAGTGACGATCATAGCA
CCAATGTCGGACAGAAAAGAAATCTCACTATTGTTTGCTTTGAAACATTG
AAAAAATTAGACGAGAACATCTTACTACGGAATAAACAAACAAATGGGAA
CTCGCATTCAAATCTGAATTTTCCGTCCCTTTTGAACAAGCTACGACAGT
TACAGACGCTTGTGATTGGTTACATTGGCGATTTTGAACCATATGCATAC
GGCGCTGGAAGGGCGAAACATGACATGTGCTTAAGTATCAATGACGTCAT
GAAAGCAGTGACCATCCAAGCTACGCTGACATTTTCCATGGAACCATTAA
GAGACGTTAGTAAAAGGTGAGACTACCTTTGTATTACGTATTTTCTGGCA
GAAATTTTGGATTAAGTTCTAAGTTGTCAATCTGCATGCAAAAGACTTGG
TCTCGCATTGATGTTTACTCTCTCCGGCCTGTCACGCGTAGTGACAAAGG
TTTACTGGGTAGTATGTATGGATACGTAGTCACCGTTAGGTGTAGATCCA
ATAGCTAAGAAAGCATCATTGGTGATAAGCAAAAATGCAAACGACAGTGA
TAAATTACCAACATGATAATTGTCAAATATATGGACAAAAAGATCAAACA
TTTTATTACCATGAGCGCTGTTTATTGTGCTAATTGTTTGTAATGTGAAA
TCATTGTTTTTCCTTCTTAGAATATTGCGAGAGTTCAACATCAGACTACA
AGAGCCACCGTCCCCCTCCCTAGTATCGGTTCTACTAGCTCTTTCGTTCT
GTGATTCCGTCTCTTTTTACGGTAACACAACGTCTGGCAACGACCATTTC
AACGAACAACTCTTCAATTACAACGAAGTCAAGCTCTTGCATTTCCGGAA
AGCACAGAATATTCTGCTAGACCAATATCACTTGCTGCAAAAGCTACATG
ACCAAGGAGACATTCAATTAGTTGGTAGTTGCAAAGATTTTGGAGTATAG
AGCCATGAAAGACATTCAAATATGATATGTCAAACTAAAAAGGGACTAAT
TCTACAGTTGGTTTTGCTTCAACAAACGTTTGTTTTCAATATTGCATGAC
TGTGAAGTCATTGTCATTAGCATGCTAAAGAGGAACTATTTTTGGTTGTG
ATCGGCCGCGGATGCGTTGTAGTTCGGCTCGTTGCTGAACTTTGCACGGC
GGTTACAGATGGGATGTACGAAGAAGCGGTCAGACTTCAGGTAAGCTGCA
ATCCTCGGCAGAGCCTGCATAAGTAAAATTAGGGAAAGACGCAATTTCAA
AGAAGGTTTTGTGTATAAACGGGCCATGGTTTTTAATTTTCTTATCAATT
ATTAAATATGACATAAGCAAGGACAAAGTGGCGCTGCATATAAGTCATAA
TAAGCATAGTTATACCTAGGAAAGGGAACACACCGGAATCACTACTAGCA
AAGTTCTGCTGTTGGTATGGACTTGTTGTATTGGACCAACAAATTTACAA
ATAAAACACCTTACACCGCAATGAAAAGGCCAGGAATTCTTCACAACCAA
ATGTATGTGTTTTTATATGTTTTAGGCAGTAGTTACAAATCTCACCTCAA
AGCGATCCATGAAGTCCTGAAACATATAAAAGGTGGAACAGAAATTCAAG
GATGTTTTATTTGAAAACATATTTACAAATGTGGCATCAAAC Coding sequence (CDS) from alignment at Sc0000007:7300512..7307353- >transcript:BL82342_cuf5 ID=transcript:BL82342_cuf5|Name=transcript:BL82342_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=2979bp|location=Sequence derived from alignment at Sc0000007:7300512..7307353- (Branchiostoma lanceolatum)
ATGGGCTTGGACCGACAGACGACATTGTTTGTTTTACTGGGCGGGGTTGT
TGGTACGGTCGTCATGACAACATGGTGCTTATGCAATAGGATGAATAGAC
CAATGCGAATGTTGAATACAGTCGTCCCATTTTCTGACTTCAGGTCCGTT
GTTTCAAAACACCTTAGACCTTCTCGCAACTTCATCGACTTCTCGTACTT
TGACGATACTCTCGCGAGATGTGAGCAGGAATCGACGCTGCTCTCCCGGT
GCGAAGGACCGACTCCCATTGGTCGATACCGCTCATGCGCAGTAGTTGGC
CATGGCGCATCACTTTCGGAAGGCAGTTGTGAAGATGCCATTCGTAGACA
CGACTTCGTCATCAGATGTAACCTTCCTCCAAGTGACGATCATAGCACCA
ATGTCGGACAGAAAAGAAATCTCACTATTGTTTGCTTTGAAACATTGAAA
AAATTAGACGAGAACATCTTACTACGGAATAAACAAACAAATGGGAACTC
GCATTCAAATCTGAATTTTCCGTCCCTTTTGAACAAGCTACGACAGTTAC
AGACGCTTGTGATTGGTTACATTGGCGATTTTGAACCATATGCATACGGC
GCTGGAAGGGCGAAACATGACATGTGCTTAAGTATCAATGACGTCATGAA
AGCAGTGACCATCCAAGCTACGCTGACATTTTCCATGGAACCATTAAGAG
ACGTTAGTAAAAGAATATTGCGAGAGTTCAACATCAGACTACAAGAGCCA
CCGTCCCCCTCCCTAGTATCGGTTCTACTAGCTCTTTCGTTCTGTGATTC
CGTCTCTTTTTACGGTAACACAACGTCTGGCAACGACCATTTCAACGAAC
AACTCTTCAATTACAACGAAGTCAAGCTCTTGCATTTCCGGAAAGCACAG
AATATTCTGCTAGACCAATATCACTTGCTGCAAAAGCTACATGACCAAGG
AGACATTCAATTAGTTGGTAGTTGCAAAGATTTTGGAGTATAGATGGGCT
TGGACCGACAGACGACATTGTTTGTTTTACTGGGCGGGGTTGTTGGTACG
GTCGTCATGACAACATGGTGCTTATGCAATAGGATGAATAGACCAATGCG
AATGTTGAATACAGTCGTCCCATTTTCTGACTTCAGGTCCGTTGTTTCAA
AACACCTTAGACCTTCTCGCAACTTCATCGACTTCTCGTACTTTGACGAT
ACTCTCGCGAGATGTGAGCAGGAATCGACGCTGCTCTCCCGGTGCGAAGG
ACCGACTCCCATTGGTCGATACCGCTCATGCGCAGTAGTTGGCCATGGCG
CATCACTTTCGGAAGGCAGTTGTGAAGATGCCATTCGTAGACACGACTTC
GTCATCAGATGTAACCTTCCTCCAAGTGACGATCATAGCACCAATGTCGG
ACAGAAAAGAAATCTCACTATTGTTTGCTTTGAAACATTGAAAAAATTAG
ACGAGAACATCTTACTACGGAATAAACAAACAAATGGGAACTCGCATTCA
AATCTGAATTTTCCGTCCCTTTTGAACAAGCTACGACAGTTACAGACGCT
TGTGATTGGTTACATTGGCGATTTTGAACCATATGCATACGGCGCTGGAA
GGGCGAAACATGACATGTGCTTAAGTATCAATGACGTCATGAAAGCAGTG
ACCATCCAAGCTACGCTGACATTTTCCATGGAACCATTAAGAGACGTTAG
TAAAAGAATATTGCGAGAGTTCAACATCAGACTACAAGAGCCACCGTCCC
CCTCCCTAGTATCGGTTCTACTAGCTCTTTCGTTCTGTGATTCCGTCTCT
TTTTACGGTAACACAACGTCTGGCAACGACCATTTCAACGAACAACTCTT
CAATTACAACGAAGTCAAGCTCTTGCATTTCCGGAAAGCACAGAATATTC
TGCTAGACCAATATCACTTGCTGCAAAAGCTACATGACCAAGGAGACATT
CAATTAGTTGGTAGTTGCAAAGATTTTGGAGTATAGATGGGCTTGGACCG
ACAGACGACATTGTTTGTTTTACTGGGCGGGGTTGTTGGTACGGTCGTCA
TGACAACATGGTGCTTATGCAATAGGATGAATAGACCAATGCGAATGTTG
AATACAGTCGTCCCATTTTCTGACTTCAGGTCCGTTGTTTCAAAACACCT
TAGACCTTCTCGCAACTTCATCGACTTCTCGTACTTTGACGATACTCTCG
CGAGATGTGAGCAGGAATCGACGCTGCTCTCCCGGTGCGAAGGACCGACT
CCCATTGGTCGATACCGCTCATGCGCAGTAGTTGGCCATGGCGCATCACT
TTCGGAAGGCAGTTGTGAAGATGCCATTCGTAGACACGACTTCGTCATCA
GATGTAACCTTCCTCCAAGTGACGATCATAGCACCAATGTCGGACAGAAA
AGAAATCTCACTATTGTTTGCTTTGAAACATTGAAAAAATTAGACGAGAA
CATCTTACTACGGAATAAACAAACAAATGGGAACTCGCATTCAAATCTGA
ATTTTCCGTCCCTTTTGAACAAGCTACGACAGTTACAGACGCTTGTGATT
GGTTACATTGGCGATTTTGAACCATATGCATACGGCGCTGGAAGGGCGAA
ACATGACATGTGCTTAAGTATCAATGACGTCATGAAAGCAGTGACCATCC
AAGCTACGCTGACATTTTCCATGGAACCATTAAGAGACGTTAGTAAAAGA
ATATTGCGAGAGTTCAACATCAGACTACAAGAGCCACCGTCCCCCTCCCT
AGTATCGGTTCTACTAGCTCTTTCGTTCTGTGATTCCGTCTCTTTTTACG
GTAACACAACGTCTGGCAACGACCATTTCAACGAACAACTCTTCAATTAC
AACGAAGTCAAGCTCTTGCATTTCCGGAAAGCACAGAATATTCTGCTAGA
CCAATATCACTTGCTGCAAAAGCTACATGACCAAGGAGACATTCAATTAG
TTGGTAGTTGCAAAGATTTTGGAGTATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000007 | genome | Sc0000007:7300512..7307353 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82342_cuf5 |
| Biotype | protein_coding |
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