transcript:BL82338_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL82338_cuf0
Unique Nametranscript:BL82338_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL82338_cuf0

>transcript:BL82338_cuf0-protein ID=transcript:BL82338_cuf0-protein|Name=transcript:BL82338_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=200bp
EITAHPVIAKSLNNIGNCWGDLGDKRKAIRYHEQSLKMMKAIYGVTTPHP
DIAASLNNIGTCWSDLGDQRKAISYNEQSLKMMKAIYGETTAHPDIAASL
NNIGNRWSDLGEQRKAIRYYEQSLQMMYGIYGDNMAHPDIASSLCNIGAC
WRQLGEKSKALSYLEQSLTMMKSIYGDNTAHPHITTALNNILACRSSLCD
Run BLAST on NCBI

mRNA from alignment at Sc0000430:124382..125251-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL82338_cuf0 ID=transcript:BL82338_cuf0|Name=transcript:BL82338_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=870bp|location=Sequence derived from alignment at Sc0000430:124382..125251- (Branchiostoma lanceolatum)
GAAATAACAGCACATCCCGTCATTGCAAAATCACTGAACAACATAGGAAA
TTGTTGGGGTGACCTTGGCGATAAGAGGAAAGCTATCAGGTATCACGAAC
AGTCACTGAAGATGATGAAAGCTATCTATGGTGTAACAACACCACATCCC
GACATTGCTGCATCCCTTAACAATATTGGAACATGTTGGAGTGACCTTGG
CGATCAGAGGAAAGCTATCAGTTATAACGAACAGTCACTGAAGATGATGA
AAGCTATTTATGGTGAAACAACAGCACATCCCGACATTGCTGCATCACTT
AACAACATTGGAAATCGTTGGAGTGACCTCGGCGAACAGAGGAAAGCTAT
CAGGTATTACGAACAGTCACTGCAGATGATGTATGGCATCTATGGGGACA
ACATGGCACATCCCGACATTGCTTCATCACTTTGCAACATTGGAGCATGT
TGGCGTCAACTCGGAGAAAAGAGTAAAGCTCTCAGTTATTTAGAACAGTC
CTTAACGATGATGAAATCTATTTATGGTGACAACACGGCACATCCTCACA
TTACAACCGCATTGAACAACATTCTAGCATGTAGGAGTTCCCTTTGTGAT
TAGAAGTGTAAAGCCGTTAGTCATGGAAGGTCGTTAACATAGGGGCACTC
TCGTTTTCTCCTTATATAACTTAACTGCCTAATGATTATATAACTTATGA
CCTATAGCAACTTTTACTACAATTCCAGAAATGTATTGCAGCATGGGATT
AGACTTTATGCTTGTATAGTCTGGTGGAATCTATAACACTTATGTACTGA
CTTAGGTTTGCTGTGTGTACTGACTAGCACATGTTCATATTTGTATTAAA
TGATACAAGTCATATATAAG

Coding sequence (CDS) from alignment at Sc0000430:124382..125251-

>transcript:BL82338_cuf0 ID=transcript:BL82338_cuf0|Name=transcript:BL82338_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=603bp|location=Sequence derived from alignment at Sc0000430:124382..125251- (Branchiostoma lanceolatum)
GAAATAACAGCACATCCCGTCATTGCAAAATCACTGAACAACATAGGAAA
TTGTTGGGGTGACCTTGGCGATAAGAGGAAAGCTATCAGGTATCACGAAC
AGTCACTGAAGATGATGAAAGCTATCTATGGTGTAACAACACCACATCCC
GACATTGCTGCATCCCTTAACAATATTGGAACATGTTGGAGTGACCTTGG
CGATCAGAGGAAAGCTATCAGTTATAACGAACAGTCACTGAAGATGATGA
AAGCTATTTATGGTGAAACAACAGCACATCCCGACATTGCTGCATCACTT
AACAACATTGGAAATCGTTGGAGTGACCTCGGCGAACAGAGGAAAGCTAT
CAGGTATTACGAACAGTCACTGCAGATGATGTATGGCATCTATGGGGACA
ACATGGCACATCCCGACATTGCTTCATCACTTTGCAACATTGGAGCATGT
TGGCGTCAACTCGGAGAAAAGAGTAAAGCTCTCAGTTATTTAGAACAGTC
CTTAACGATGATGAAATCTATTTATGGTGACAACACGGCACATCCTCACA
TTACAACCGCATTGAACAACATTCTAGCATGTAGGAGTTCCCTTTGTGAT
TAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL82338gene:BL82338Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL82338_cuf0-E1BL82338_cuf0-E1-1564476830-463777Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL82338_cuf0transcript:BL82338_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000430genomeSc0000430:124382..125251 -
Properties
Property NameValue
Transcript idBL82338_cuf0
Biotypeprotein_coding