|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82191_cuf0 >transcript:BL82191_cuf0-protein ID=transcript:BL82191_cuf0-protein|Name=transcript:BL82191_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=780bp
DKNTNNEIENYVSDFSLMLRDVGFKSLCVRFNKKRPQKARNKKWFDKSCS
EMKRELKNLASLLEKNPSNPHVRGAFFRRKKEYRKLLRKKKRDFHQQIMD
QLSSLREKDPNAFWKLVNQLKPDKTQQSCISNEMWLKHFSAVDKSSTDNL
KNSETELPTPENGQSQPSSPIATTENFTLDALITAEELITAISNLKNNKS
SSSDLITNEMLKCGKQILQKPLLHLFNSCLQNGYFPDDWSLSHIVPIHKS
GDTSVPDNYRGISIISCLGKLFTSILNNRLVNYAEQNSLFKPQQAGFRKN
YRTSDNLFVLTTLVSKYLSKNARIYSCFVDFSKAFDSVWRAGLFFKLNNL
GIGGKFLMTIKNMYSKTKNCIKTNGGLTETFLTNCGVRQGCNLSPTLFNL
FISDITSEFDDVCCNAPVLHDRKVPCLLYADDLVLFSESQKGLQACLVRL
EKYCKYWNLKVNLRKTKIIVFTKGGRLPKNCLFLLNGNVIEIVMSYCYLG
IVVSAAGTFKANNKHLCNKGLKSLFSIRQSLDKADASLTVKNKLFDTCIK
PILLYGSEIWGAFKSQKFCPIESVLLKFCKYSLNIPKTASNLAARAELGR
YPIHLEASLNAIKYFIRLCKNVPADSLQADALLCQVNLEASGAKCWAAGV
RSTLEECGYAFLWQSAQSIVSSRPQIISSIYQRLTDIHFQTFLSEIHNDN
KGANAKNKLRTYRLLKHSYNEEEYLKIANVRHRSAVTKLRTSCHKLRIES
GRHNRTPLEQRICQFCSLGKVEDEVHFIVD Run BLAST on NCBI mRNA from alignment at Sc0000006:4502454..4504797+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82191_cuf0 ID=transcript:BL82191_cuf0|Name=transcript:BL82191_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2344bp|location=Sequence derived from alignment at Sc0000006:4502454..4504797+ (Branchiostoma lanceolatum)
CAGATAAAAACACAAACAATGAAATTGAAAACTACGTTTCCGACTTCAGC
TTAATGCTGAGGGACGTCGGGTTCAAATCATTATGTGTAAGATTCAATAA
GAAGCGTCCACAAAAAGCTCGTAATAAGAAATGGTTTGATAAAAGCTGTT
CCGAAATGAAACGTGAACTAAAGAACTTAGCCTCTTTGCTGGAGAAAAAC
CCGTCCAACCCACATGTGAGGGGAGCGTTCTTCAGAAGAAAGAAAGAATA
CAGAAAACTATTAAGAAAGAAAAAGAGGGACTTTCATCAACAAATTATGG
ATCAACTTTCTTCCCTTAGGGAGAAAGATCCAAACGCTTTTTGGAAACTG
GTTAACCAACTTAAACCGGATAAAACACAACAAAGCTGTATATCAAATGA
GATGTGGCTGAAGCATTTTAGTGCTGTAGACAAGTCATCGACCGACAATC
TGAAAAATTCTGAAACTGAACTTCCCACCCCTGAAAACGGCCAATCACAA
CCCTCATCTCCTATCGCAACCACAGAGAACTTCACACTAGATGCTTTGAT
AACAGCTGAAGAATTAATCACAGCCATCTCAAACCTAAAAAACAATAAAT
CTAGCAGCAGCGACTTGATCACAAATGAAATGTTAAAATGTGGTAAACAA
ATCCTACAGAAACCTTTACTACACCTGTTTAACTCATGCTTACAAAACGG
TTACTTCCCCGACGATTGGTCCCTTAGTCATATTGTTCCCATACACAAAT
CTGGTGATACCTCAGTCCCCGATAACTACCGGGGAATCTCCATCATCAGC
TGCTTAGGGAAACTATTCACCTCAATTTTGAACAATCGCCTTGTCAATTA
CGCGGAACAGAACAGCCTTTTCAAACCTCAACAGGCCGGTTTTAGAAAAA
ATTATAGAACATCTGATAATTTATTTGTGTTAACCACTTTAGTCAGCAAA
TACCTCAGCAAAAATGCTCGAATTTATTCATGTTTTGTAGATTTTAGCAA
AGCTTTTGACTCCGTTTGGCGAGCAGGCCTATTTTTCAAATTAAACAATC
TTGGTATAGGGGGGAAATTTTTAATGACCATAAAAAACATGTATTCAAAA
ACTAAAAATTGTATTAAAACCAACGGCGGCCTTACAGAAACATTTTTAAC
TAACTGTGGGGTTCGACAAGGCTGTAATCTAAGTCCAACTTTGTTTAATT
TATTTATTAGCGATATAACATCTGAGTTTGATGATGTTTGTTGCAACGCC
CCTGTCCTACACGATAGGAAAGTACCGTGCCTTTTGTATGCCGATGACTT
GGTGTTATTTTCTGAATCCCAAAAAGGCTTGCAAGCGTGTCTAGTTAGAT
TAGAGAAATATTGCAAATATTGGAACCTGAAGGTAAATTTAAGAAAGACC
AAGATAATTGTCTTCACTAAGGGAGGCAGACTACCAAAGAATTGTTTATT
TTTGTTAAATGGCAACGTTATAGAAATTGTTATGTCATACTGTTATTTAG
GTATAGTGGTAAGCGCAGCTGGCACGTTCAAGGCAAACAACAAACATTTA
TGCAACAAGGGACTAAAGTCCCTGTTTAGCATCAGACAGTCTCTAGACAA
AGCTGATGCCTCCCTAACCGTTAAAAACAAACTCTTCGACACCTGTATTA
AACCCATCTTACTATATGGGTCTGAAATATGGGGGGCTTTCAAAAGCCAA
AAATTTTGTCCAATTGAATCTGTCCTCTTAAAATTTTGCAAATATTCACT
CAATATTCCAAAAACAGCTAGCAATCTTGCTGCACGGGCAGAACTAGGGA
GGTATCCCATTCATCTGGAGGCCTCCCTAAACGCCATCAAGTATTTCATT
CGACTTTGCAAGAACGTGCCAGCTGACAGCCTCCAGGCAGACGCTCTCCT
ATGTCAAGTAAATTTAGAAGCTTCAGGTGCCAAGTGTTGGGCGGCTGGGG
TACGCAGCACTCTAGAGGAATGTGGTTATGCTTTCTTATGGCAAAGCGCC
CAATCAATTGTATCAAGTAGGCCCCAAATTATTTCATCGATTTATCAGCG
TTTAACAGATATTCACTTTCAGACCTTTCTATCCGAAATTCATAACGATA
ACAAAGGTGCAAATGCAAAAAATAAACTACGAACGTACAGATTATTGAAA
CATTCCTATAACGAAGAAGAATATCTAAAGATTGCAAATGTACGTCACAG
ATCAGCCGTTACAAAACTAAGAACAAGTTGTCACAAATTGCGAATCGAAT
CAGGAAGACATAACCGCACCCCTCTAGAGCAAAGAATCTGCCAATTTTGT
AGTCTAGGTAAAGTAGAAGACGAAGTACATTTTATTGTTGACTG Coding sequence (CDS) from alignment at Sc0000006:4502454..4504797+ >transcript:BL82191_cuf0 ID=transcript:BL82191_cuf0|Name=transcript:BL82191_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2340bp|location=Sequence derived from alignment at Sc0000006:4502454..4504797+ (Branchiostoma lanceolatum)
GATAAAAACACAAACAATGAAATTGAAAACTACGTTTCCGACTTCAGCTT
AATGCTGAGGGACGTCGGGTTCAAATCATTATGTGTAAGATTCAATAAGA
AGCGTCCACAAAAAGCTCGTAATAAGAAATGGTTTGATAAAAGCTGTTCC
GAAATGAAACGTGAACTAAAGAACTTAGCCTCTTTGCTGGAGAAAAACCC
GTCCAACCCACATGTGAGGGGAGCGTTCTTCAGAAGAAAGAAAGAATACA
GAAAACTATTAAGAAAGAAAAAGAGGGACTTTCATCAACAAATTATGGAT
CAACTTTCTTCCCTTAGGGAGAAAGATCCAAACGCTTTTTGGAAACTGGT
TAACCAACTTAAACCGGATAAAACACAACAAAGCTGTATATCAAATGAGA
TGTGGCTGAAGCATTTTAGTGCTGTAGACAAGTCATCGACCGACAATCTG
AAAAATTCTGAAACTGAACTTCCCACCCCTGAAAACGGCCAATCACAACC
CTCATCTCCTATCGCAACCACAGAGAACTTCACACTAGATGCTTTGATAA
CAGCTGAAGAATTAATCACAGCCATCTCAAACCTAAAAAACAATAAATCT
AGCAGCAGCGACTTGATCACAAATGAAATGTTAAAATGTGGTAAACAAAT
CCTACAGAAACCTTTACTACACCTGTTTAACTCATGCTTACAAAACGGTT
ACTTCCCCGACGATTGGTCCCTTAGTCATATTGTTCCCATACACAAATCT
GGTGATACCTCAGTCCCCGATAACTACCGGGGAATCTCCATCATCAGCTG
CTTAGGGAAACTATTCACCTCAATTTTGAACAATCGCCTTGTCAATTACG
CGGAACAGAACAGCCTTTTCAAACCTCAACAGGCCGGTTTTAGAAAAAAT
TATAGAACATCTGATAATTTATTTGTGTTAACCACTTTAGTCAGCAAATA
CCTCAGCAAAAATGCTCGAATTTATTCATGTTTTGTAGATTTTAGCAAAG
CTTTTGACTCCGTTTGGCGAGCAGGCCTATTTTTCAAATTAAACAATCTT
GGTATAGGGGGGAAATTTTTAATGACCATAAAAAACATGTATTCAAAAAC
TAAAAATTGTATTAAAACCAACGGCGGCCTTACAGAAACATTTTTAACTA
ACTGTGGGGTTCGACAAGGCTGTAATCTAAGTCCAACTTTGTTTAATTTA
TTTATTAGCGATATAACATCTGAGTTTGATGATGTTTGTTGCAACGCCCC
TGTCCTACACGATAGGAAAGTACCGTGCCTTTTGTATGCCGATGACTTGG
TGTTATTTTCTGAATCCCAAAAAGGCTTGCAAGCGTGTCTAGTTAGATTA
GAGAAATATTGCAAATATTGGAACCTGAAGGTAAATTTAAGAAAGACCAA
GATAATTGTCTTCACTAAGGGAGGCAGACTACCAAAGAATTGTTTATTTT
TGTTAAATGGCAACGTTATAGAAATTGTTATGTCATACTGTTATTTAGGT
ATAGTGGTAAGCGCAGCTGGCACGTTCAAGGCAAACAACAAACATTTATG
CAACAAGGGACTAAAGTCCCTGTTTAGCATCAGACAGTCTCTAGACAAAG
CTGATGCCTCCCTAACCGTTAAAAACAAACTCTTCGACACCTGTATTAAA
CCCATCTTACTATATGGGTCTGAAATATGGGGGGCTTTCAAAAGCCAAAA
ATTTTGTCCAATTGAATCTGTCCTCTTAAAATTTTGCAAATATTCACTCA
ATATTCCAAAAACAGCTAGCAATCTTGCTGCACGGGCAGAACTAGGGAGG
TATCCCATTCATCTGGAGGCCTCCCTAAACGCCATCAAGTATTTCATTCG
ACTTTGCAAGAACGTGCCAGCTGACAGCCTCCAGGCAGACGCTCTCCTAT
GTCAAGTAAATTTAGAAGCTTCAGGTGCCAAGTGTTGGGCGGCTGGGGTA
CGCAGCACTCTAGAGGAATGTGGTTATGCTTTCTTATGGCAAAGCGCCCA
ATCAATTGTATCAAGTAGGCCCCAAATTATTTCATCGATTTATCAGCGTT
TAACAGATATTCACTTTCAGACCTTTCTATCCGAAATTCATAACGATAAC
AAAGGTGCAAATGCAAAAAATAAACTACGAACGTACAGATTATTGAAACA
TTCCTATAACGAAGAAGAATATCTAAAGATTGCAAATGTACGTCACAGAT
CAGCCGTTACAAAACTAAGAACAAGTTGTCACAAATTGCGAATCGAATCA
GGAAGACATAACCGCACCCCTCTAGAGCAAAGAATCTGCCAATTTTGTAG
TCTAGGTAAAGTAGAAGACGAAGTACATTTTATTGTTGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000006 | genome | Sc0000006:4502454..4504797 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82191_cuf0 |
| Biotype | protein_coding |
|
