transcript:BL82150_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL82150_cuf0
Unique Nametranscript:BL82150_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL82150_cuf0

>transcript:BL82150_cuf0-protein ID=transcript:BL82150_cuf0-protein|Name=transcript:BL82150_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=114bp
YTCALLTRLRTGTCSLNLSLFTRNLATSPACTCGCRSESVVHYLLYCPIY
NQQRLNLLGNLRNLLAPILDIDTLSDQAFIYLLLRGSSFVSYDFNCNILG
LTQHYILTSRRFKT
Run BLAST on NCBI

mRNA from alignment at Sc0000168:534235..534700+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL82150_cuf0 ID=transcript:BL82150_cuf0|Name=transcript:BL82150_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=466bp|location=Sequence derived from alignment at Sc0000168:534235..534700+ (Branchiostoma lanceolatum)
GTACACTTGCGCCCTCCTCACACGCCTTCGCACCGGCACGTGCAGTCTTA
ACCTAAGTTTATTTACACGCAACTTAGCAACAAGTCCAGCCTGCACTTGC
GGATGTCGAAGCGAAAGCGTTGTTCATTATCTTTTGTACTGCCCTATATA
CAACCAACAAAGACTCAACCTTCTGGGCAACCTACGGAACCTTTTAGCCC
CTATTCTTGATATCGATACTTTGTCTGATCAAGCCTTCATTTATTTATTA
TTAAGAGGTTCATCCTTTGTTTCGTATGATTTCAACTGTAACATTTTAGG
CTTGACTCAGCACTATATTTTGACAAGCAGACGTTTTAAAACTTAGTTCA
GGTATATTGATATATTCATTGTTTGTTTGTTAGCTTGTTTGTATTGGACG
ACCCAATTGCTGTTTCTTATTGTTATTGTACTTGTCTATGTAACTTGTAT
CTTTTTTTTCCAGAGG

Coding sequence (CDS) from alignment at Sc0000168:534235..534700+

>transcript:BL82150_cuf0 ID=transcript:BL82150_cuf0|Name=transcript:BL82150_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=345bp|location=Sequence derived from alignment at Sc0000168:534235..534700+ (Branchiostoma lanceolatum)
TACACTTGCGCCCTCCTCACACGCCTTCGCACCGGCACGTGCAGTCTTAA
CCTAAGTTTATTTACACGCAACTTAGCAACAAGTCCAGCCTGCACTTGCG
GATGTCGAAGCGAAAGCGTTGTTCATTATCTTTTGTACTGCCCTATATAC
AACCAACAAAGACTCAACCTTCTGGGCAACCTACGGAACCTTTTAGCCCC
TATTCTTGATATCGATACTTTGTCTGATCAAGCCTTCATTTATTTATTAT
TAAGAGGTTCATCCTTTGTTTCGTATGATTTCAACTGTAACATTTTAGGC
TTGACTCAGCACTATATTTTGACAAGCAGACGTTTTAAAACTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL82150gene:BL82150Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL82150_cuf0-E1BL82150_cuf0-E1-1564476830-363047Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL82150_cuf0transcript:BL82150_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000168genomeSc0000168:534235..534700 +
Properties
Property NameValue
Transcript idBL82150_cuf0
Biotypeprotein_coding