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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82037_cuf0 >transcript:BL82037_cuf0-protein ID=transcript:BL82037_cuf0-protein|Name=transcript:BL82037_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=272bp
GTSSKYDKVVVQHKFNPWDFDRTGRVPMWTLASHVAGLSHQARRGTFFKS
PLPSHPSTTVIFHSQTWELYPSFYKSFGAESILTVTMKMVHVGRTSYSVE
TEISDTSTTEVLVKNVAQYVNFDMDSRRPKTLPDWVRERYAHLTSRPRPT
TVNVFEMPACSTPFVHSVRVPASHIDWNSHAGQQYYYSYCFDCAALGARN
GMYSTVRGDIFKHNVLEISVLFQREALEGDLLSVESWEDEGNPGTLKFQV
KKGSDGIVQMAIAFHTPSESKL Run BLAST on NCBI mRNA from alignment at Sc0000000:2577521..2580464- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82037_cuf0 ID=transcript:BL82037_cuf0|Name=transcript:BL82037_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2944bp|location=Sequence derived from alignment at Sc0000000:2577521..2580464- (Branchiostoma lanceolatum)
AGGAACGTCAAGCAAGTACGACAAAGTGGTGGTACAGCACAAGTTTAACC
CATGGGACTTTGACAGAACAGGTAAGCTTACTGGACGATTACAAATCCAT
CTTAAAAGGGTCTGTGTGAAGGGGCACTACTCAATTCCTGGGTTATAAAT
GGTTCATCTATCTGTCCATCTGCGATTAATCTTTACAAATGTGGTTGAAT
TCTTACTCATAAAGATGCGGTCTTTCCTAGAATAGCACTCTTCTCTGGTC
TTGTGTATGGCCTTAAGCTTCAATCATAATCATACTTTGATTTAGCATGA
AAGTTCATCTGAGTTGGTAGAATTCATTATTAACTAAGATTAAACTTTTC
ATCCAACACTGTTAAGAAATTGGGACTTACCCAAATTTTTGGTTGACGAA
CCCGTCTCTGTATCTACATCAGAGCGCACAGACCTACCTTGAACAGAGAC
GGGGAGCGACACAAGTTATCTGGCACGTATGACCCGCTACTGCGGTCACG
TGTCTCTGACGTCACGTTCCAGAAGTAGACGGGTCCATTTCGTGAAAATT
TGGGAAAGTCCCGATTTCTTTTACAATGTTGGATGAACAGTTTAATCTTA
GTTAATCATACTTTGATTTGTTGATGAAAGTTAGACATCCAGGTAGTAAG
GTACGCCAAAAATAATTACTCAAGCAACTGGATAAAATTTTGAAACACTC
AGACGTTTCAGACAGCATCCACTGTCTTTCGTCAGTAGTAGAGAACACCA
GGTTTTATACCAAAGCTCTGAATAGGTATGTTAATGAGGTTAAGACAATT
TAGGATGTCTTGAAGTAGTCTTTAAAAGAAGATTAATTCAAGACAAAGTT
TTGTGCCAAAAGTTCAGTTAGCTAACTGTTGATTTTAGTACAGTAACCAT
TTGATTTGATTTGCACCACAGGAAGAGTGCCGATGTGGACATTGGCATCT
CACGTCGCGGGCCTATCCCACCAGGCAAGACGTGGCACGTTCTTCAAGTC
TCCTCTGCCAAGCCATCCTTCCACTACGGTTATTTTTCATTCCCAAACCT
GGGAATTATACCCATCCTTCTATAAAAGCTTTGGAGCAGAGAGTATTCTA
ACGGTGACGATGAAAATGGTGCATGTCGGCAGAACGTCTTATTCTGTTGA
AACCGAAATCTCTGATACCTCCACAACAGAGGTCTTGGTTAAGAACGTCG
CTCAATATGTTAACTTTGACATGGACTCACGTAGACCCAAAACGCTTCCT
GATTGGGTGAGGGAGCGTTACGCCCATCTGACGTCACGGCCACGCCCAAC
AACGGTCAATGTCTTTGAAATGCCGGCCTGTTCTACTCCGTTCGTTCATT
CGGTACGCGTTCCTGCCAGTCACATTGACTGGAACAGCCACGCCGGTCAA
CAGTATTACTATAGCTACTGTTTCGACTGCGCTGCTTTGGGAGCACGCAA
TGGGATGTATTCCACTGTCAGAGGAGACATTTTCAAACACAACGTTCTGG
AAATCTCCGTGCTGTTCCAGAGAGAAGCGCTAGAGGGCGACCTACTCTCA
GTTGAATCGTGGGAAGACGAAGGGAATCCTGGGACTTTGAAGTTTCAGGT
TAAGAAGGGGTCTGATGGTATTGTACAGATGGCTATTGCGTTTCACACAC
CTTCTGAGTCAAAACTGTAGACGCACTCGACTAGTGTATGAATCACTAAC
TTCAACTGACGGCGTATCAATTTGTATATCCTGTATACTAGTAACTTTAC
GTTGGCATATATTGCGGGAAAGCCGGTAACATGTAGCCGATAATTCCAGC
AGGGTACATGATTCCGACCCTGAAAAGATACGTCCAAATAGATCCCCAAC
TCAACGTCTCCCCTGTATAATGCACTCCTACCACGGGATGCCACACTAGA
GATCTCTCAAACTTACTGTTTATAAAAGTGACGGATTTATGTAACCGGTA
GTTTAATGAATGAATGGATGAATGAAGACCTTTATTGTACACACATACAC
ACTGGGTCCAGTACAGGTCACAACAGAAAACGTCACGGTTTGCAAATACA
ATGACAAGCTAGCACTGGTCTAATAATTACGTGAATTTGGCCTCTTCTCG
CTTCTATACGACGACAAGACCGTATATCCTTACCTGATACGATGGCGTAT
CTTGCGGTGTATATCCTTACCTGGTACGATCGCGTATCTTGTGGTGCATA
TCCTTACCTTGTACGATGGCGTATCTCGCGGAGAAGCCCGTATATCCTTA
CCTGGTACGATGGCGTCTCTCGCGGAGAAGCCCGTATATCCTTACTTGGT
ACGATGGCGTATCTCGCGGAGAAGCCCGTATATCCTTACCTGGTACGATG
GCGTATCTCGCGGAGAAGCCCGTATATCCTTACCTGGTACGATGGCGTAT
CTCGCGGAGAAGCCCGTATATCCTTACCTGGTACGATGGCGTATCTCGCG
GAGAAGCCCGTATATCCTTACCTGGTACGATGGCGTATCTCGCGGAGAAG
CCCGTATATCCTTACCTGGTACGATGGCGTATCTCGCGGAGAAGCCCGTA
TATCCTTACCTGGTACGATGGCGTATCTCGCGGAGAAGCCCGTATATCCT
TACCTGGTACGATGGCGTATCTCGCGGAGAAGCCCGTATATCCTTACCTG
GTACGATGGCGTATCTCGCGGAGAAGCCCGTATACCCGCTCTCCCACGTC
GTCCTGAACTTGACCTGTAGTTTGATCTCGCTGGCGCGGCTGGTGTAGAC
CTCGGGCGCGATGCTGCCACAGTGTCTGCAGAGATTCAAGGGACAAATCT
TAATTGAGCAAGTCTTACAGTAGCCTGGAATGCAGTCTTGTTAGCTCAAG
TCTACGTGAACTTCGACGACAGCTTTCCCTACGAATTACGGGAAATCAGG
CTGTCTACGCCCTACGCATGCAGAGCCTCCTTAAGCTTATCACT Coding sequence (CDS) from alignment at Sc0000000:2577521..2580464- >transcript:BL82037_cuf0 ID=transcript:BL82037_cuf0|Name=transcript:BL82037_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1638bp|location=Sequence derived from alignment at Sc0000000:2577521..2580464- (Branchiostoma lanceolatum)
GGAACGTCAAGCAAGTACGACAAAGTGGTGGTACAGCACAAGTTTAACCC
ATGGGACTTTGACAGAACAGGAAGAGTGCCGATGTGGACATTGGCATCTC
ACGTCGCGGGCCTATCCCACCAGGCAAGACGTGGCACGTTCTTCAAGTCT
CCTCTGCCAAGCCATCCTTCCACTACGGTTATTTTTCATTCCCAAACCTG
GGAATTATACCCATCCTTCTATAAAAGCTTTGGAGCAGAGAGTATTCTAA
CGGTGACGATGAAAATGGTGCATGTCGGCAGAACGTCTTATTCTGTTGAA
ACCGAAATCTCTGATACCTCCACAACAGAGGTCTTGGTTAAGAACGTCGC
TCAATATGTTAACTTTGACATGGACTCACGTAGACCCAAAACGCTTCCTG
ATTGGGTGAGGGAGCGTTACGCCCATCTGACGTCACGGCCACGCCCAACA
ACGGTCAATGTCTTTGAAATGCCGGCCTGTTCTACTCCGTTCGTTCATTC
GGTACGCGTTCCTGCCAGTCACATTGACTGGAACAGCCACGCCGGTCAAC
AGTATTACTATAGCTACTGTTTCGACTGCGCTGCTTTGGGAGCACGCAAT
GGGATGTATTCCACTGTCAGAGGAGACATTTTCAAACACAACGTTCTGGA
AATCTCCGTGCTGTTCCAGAGAGAAGCGCTAGAGGGCGACCTACTCTCAG
TTGAATCGTGGGAAGACGAAGGGAATCCTGGGACTTTGAAGTTTCAGGTT
AAGAAGGGGTCTGATGGTATTGTACAGATGGCTATTGCGTTTCACACACC
TTCTGAGTCAAAACTGTAGGGAACGTCAAGCAAGTACGACAAAGTGGTGG
TACAGCACAAGTTTAACCCATGGGACTTTGACAGAACAGGAAGAGTGCCG
ATGTGGACATTGGCATCTCACGTCGCGGGCCTATCCCACCAGGCAAGACG
TGGCACGTTCTTCAAGTCTCCTCTGCCAAGCCATCCTTCCACTACGGTTA
TTTTTCATTCCCAAACCTGGGAATTATACCCATCCTTCTATAAAAGCTTT
GGAGCAGAGAGTATTCTAACGGTGACGATGAAAATGGTGCATGTCGGCAG
AACGTCTTATTCTGTTGAAACCGAAATCTCTGATACCTCCACAACAGAGG
TCTTGGTTAAGAACGTCGCTCAATATGTTAACTTTGACATGGACTCACGT
AGACCCAAAACGCTTCCTGATTGGGTGAGGGAGCGTTACGCCCATCTGAC
GTCACGGCCACGCCCAACAACGGTCAATGTCTTTGAAATGCCGGCCTGTT
CTACTCCGTTCGTTCATTCGGTACGCGTTCCTGCCAGTCACATTGACTGG
AACAGCCACGCCGGTCAACAGTATTACTATAGCTACTGTTTCGACTGCGC
TGCTTTGGGAGCACGCAATGGGATGTATTCCACTGTCAGAGGAGACATTT
TCAAACACAACGTTCTGGAAATCTCCGTGCTGTTCCAGAGAGAAGCGCTA
GAGGGCGACCTACTCTCAGTTGAATCGTGGGAAGACGAAGGGAATCCTGG
GACTTTGAAGTTTCAGGTTAAGAAGGGGTCTGATGGTATTGTACAGATGG
CTATTGCGTTTCACACACCTTCTGAGTCAAAACTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:2577521..2580464 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82037_cuf0 |
| Biotype | protein_coding |
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