transcript:BL82021_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL82021_cuf0
Unique Nametranscript:BL82021_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL82021_cuf0

>transcript:BL82021_cuf0-protein ID=transcript:BL82021_cuf0-protein|Name=transcript:BL82021_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=150bp
NGLGIAVRSLNLSLFKKHLVKLVRPSFYSHFSHGPRYTCALLTRLRTGTC
SLNLSLFTRNLATSPACTCGCRSESVAHYLLYCPIYNQQRLNLLGNLRNL
LAPILDIDTLSDQAFIYLLLRGSSFVSYDFNCNILGLTQHYILTSRRFKT
Run BLAST on NCBI

mRNA from alignment at Sc0000000:4146789..4147449-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL82021_cuf0 ID=transcript:BL82021_cuf0|Name=transcript:BL82021_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=661bp|location=Sequence derived from alignment at Sc0000000:4146789..4147449- (Branchiostoma lanceolatum)
GAACGGTCTTGGTATAGCTGTTCGATCCTTAAATCTTTCGTTGTTTAAAA
AACATCTAGTGAAATTAGTACGTCCCTCTTTCTATTCACATTTTAGTCAT
GGCCCCCGGTACACTTGCGCCCTCCTCACACGCCTTCGCACCGGCACGTG
CAGTCTTAACCTAAGTTTATTTACACGCAACTTAGCAACAAGTCCAGCCT
GCACTTGCGGATGTCGAAGCGAAAGCGTTGCTCATTATCTTTTGTACTGC
CCTATATACAATCAACAAAGACTCAACCTTCTGGGCAACCTACGGAACCT
TTTAGCCCCTATTCTTGATATTGATACTTTGTCTGATCAAGCCTTCATTT
ATTTATTATTAAGAGGTTCATCCTTTGTTTCGTATGATTTCAACTGTAAC
ATTTTAGGCTTGACTCAGCACTATATTTTGACAAGCAGACGTTTTAAAAC
TTAGTTCAGGTATATTGATATATTCATTGTTTGTTTGTTTGTTAGCTTGT
TTGTATTGGACGACCCAATTGCTGTTTCTCATTGCTATTGTACTTGTCTA
TGTAACTTGTATTTTTTTTTCCAGAGGTGATGTTTAATATTAGCTTCAGC
TAGAGTACATCACCTCTGTGTCCTGTATATTCTTCTGTTGTTTAATAAAA
AAAAAAAAAAA

Coding sequence (CDS) from alignment at Sc0000000:4146789..4147449-

>transcript:BL82021_cuf0 ID=transcript:BL82021_cuf0|Name=transcript:BL82021_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=453bp|location=Sequence derived from alignment at Sc0000000:4146789..4147449- (Branchiostoma lanceolatum)
AACGGTCTTGGTATAGCTGTTCGATCCTTAAATCTTTCGTTGTTTAAAAA
ACATCTAGTGAAATTAGTACGTCCCTCTTTCTATTCACATTTTAGTCATG
GCCCCCGGTACACTTGCGCCCTCCTCACACGCCTTCGCACCGGCACGTGC
AGTCTTAACCTAAGTTTATTTACACGCAACTTAGCAACAAGTCCAGCCTG
CACTTGCGGATGTCGAAGCGAAAGCGTTGCTCATTATCTTTTGTACTGCC
CTATATACAATCAACAAAGACTCAACCTTCTGGGCAACCTACGGAACCTT
TTAGCCCCTATTCTTGATATTGATACTTTGTCTGATCAAGCCTTCATTTA
TTTATTATTAAGAGGTTCATCCTTTGTTTCGTATGATTTCAACTGTAACA
TTTTAGGCTTGACTCAGCACTATATTTTGACAAGCAGACGTTTTAAAACT
TAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL82021gene:BL82021Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL82021_cuf0-E1BL82021_cuf0-E1-1564476830-13447Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL82021_cuf0transcript:BL82021_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000000genomeSc0000000:4146789..4147449 -
Properties
Property NameValue
Transcript idBL82021_cuf0
Biotypeprotein_coding