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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL81917_cuf0 >transcript:BL81917_cuf0-protein ID=transcript:BL81917_cuf0-protein|Name=transcript:BL81917_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=849bp
AFSMYVPKPYARTVWDYSRIDYDKLSEFCSCSEWNDIFLLPSVDEAASKL
CQLIIEAKNVCIPSKSILIRPKDKPWITKEIRKLMRSRNKLHKLAKLSNS
QVSWAAYRKIRNKLSNAISSSKSKYFCRLSDSLKDPSLSGKKWWHVVKHF
YKPKTITSIPPLNEGSTFIVDSMAKASLFNEYFVSQSSIDESNASLPEFH
YLTSSRLLHVTTTPEEVQLYVKELDTHKSHGYDNIDNRFLKIVVPFIADK
ISYVFNLSLCHGHFPKIWKYANVVPIFKKGDASDKSNYRPVSLLPTLSKV
LEKIVYKHLYNHLMQNNLLYRLQSGFIRGDSTVCQLAYFCHTILKALDTG
KEVRAVFLDFSRAFDKVWHNGLIFKLHCNGIEGPLINWIYSYLSDRSQRV
VIDGTCSSWCLVSAGVPQGSVLGPLFFLVYINDIVDNLVSQPFLFADDSS
LLHVVDNPIHSASCLNADLEKIHTWAVQWLMELNPTKTVEMIFSTKRANL
VHPPLLLNDCVIQSVSSHKHIGATLSSDMSWKSHTNYMLNKISKTLATFK
GLKFKLPRNVLEILYKSFIRPCLEYGDVVWQSCTYEESQLLERIQYHCSL
IVAGAVKGSSYSLTCKELGWETLSDRRHIHRLLLFYKIIHGVTRSYLSDL
LPAVISSTCLYDLRNKMNLRSLTGSTNRFVKSFVPYSLTHWNKLDVGIRS
YSYSKFRMYLFKCVRPSKPSHFSYGPRYACSLLARFRIGTHGLNDSLFSR
GLVDSPACYCGCQCESISHFLLHCPLHINQRLLLLDQLSKIIGHIFDIKS
LSDDAIKHLLIYGSSLCSHSSNCNIMSLTQEYIILTKRFSHGNWYIPSY Run BLAST on NCBI mRNA from alignment at Sc0000951:7237..10006- Legend: CDSpolypeptideexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL81917_cuf0 ID=transcript:BL81917_cuf0|Name=transcript:BL81917_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2770bp|location=Sequence derived from alignment at Sc0000951:7237..10006- (Branchiostoma lanceolatum)
GCCTTTTCGATGTATGTACCCAAACCTTATGCACGGACTGTATGGGATTA
TTCTCGCATTGATTACGATAAACTGTCTGAATTTTGTTCCTGCTCGGAAT
GGAATGACATTTTTCTCCTTCCATCTGTAGACGAAGCTGCGTCAAAACTA
TGTCAACTTATTATTGAGGCAAAAAATGTTTGTATCCCCAGCAAAAGCAT
ATTAATTAGACCAAAAGATAAACCCTGGATAACAAAAGAAATCCGGAAGC
TTATGCGATCCCGTAATAAACTTCATAAGTTGGCTAAGCTATCAAACTCT
CAGGTTAGTTGGGCAGCATACCGTAAAATCCGCAATAAGCTTTCGAATGC
CATCTCATCCAGCAAGTCCAAGTATTTTTGTCGTCTGTCTGACTCTTTAA
AGGATCCTTCTTTATCTGGCAAGAAGTGGTGGCATGTAGTAAAACACTTT
TACAAACCTAAAACAATTACTTCTATTCCCCCTTTGAACGAAGGCAGCAC
GTTTATTGTTGACTCGATGGCGAAGGCTTCACTTTTTAATGAATACTTTG
TCTCTCAATCCTCCATAGATGAATCTAATGCATCGCTGCCTGAATTTCAC
TACCTGACAAGTAGTCGTTTACTTCATGTTACCACCACACCAGAAGAAGT
TCAACTTTATGTCAAAGAACTAGATACTCATAAGTCACACGGATATGACA
ACATAGACAACCGTTTCCTAAAAATAGTTGTTCCGTTTATAGCTGACAAA
ATTAGTTACGTATTTAATCTATCATTGTGTCATGGTCATTTTCCTAAAAT
CTGGAAATATGCTAATGTTGTACCTATTTTCAAAAAGGGCGATGCTAGTG
ATAAGAGCAACTATCGTCCCGTGTCCCTACTTCCAACCCTGTCGAAGGTC
CTAGAAAAAATAGTCTATAAGCACCTTTACAACCACCTGATGCAAAATAA
TCTTTTGTATAGGCTTCAATCCGGTTTTATAAGAGGCGATTCTACTGTTT
GTCAATTAGCGTATTTTTGTCATACTATTTTAAAAGCCCTGGATACCGGA
AAAGAAGTCCGAGCTGTATTTCTTGATTTTTCTCGGGCGTTCGATAAGGT
GTGGCATAATGGCCTTATTTTCAAATTACATTGTAATGGGATCGAAGGGC
CTCTTATAAACTGGATTTATTCATATCTCAGTGACAGATCTCAAAGGGTT
GTAATAGACGGTACATGTTCTTCCTGGTGTTTAGTTAGTGCTGGAGTTCC
ACAAGGGTCTGTATTAGGTCCCTTATTCTTTCTTGTTTACATTAATGATA
TTGTTGATAATCTTGTCTCCCAGCCATTTCTTTTTGCTGATGACAGCTCT
CTTCTTCATGTTGTTGATAATCCGATTCACTCCGCTTCCTGTTTAAATGC
TGATTTGGAAAAAATTCACACATGGGCTGTTCAGTGGTTAATGGAACTTA
ATCCAACCAAAACAGTAGAAATGATCTTTTCAACCAAAAGAGCAAATTTA
GTACACCCACCTCTTCTCTTAAACGATTGTGTTATCCAGTCTGTATCCTC
CCACAAACATATCGGAGCTACATTAAGCTCCGATATGTCCTGGAAATCTC
ATACCAACTACATGTTGAACAAAATTTCCAAAACTTTGGCCACATTTAAA
GGATTGAAATTCAAACTACCTCGTAATGTTCTGGAGATATTGTACAAATC
GTTTATTCGTCCCTGCTTAGAGTACGGTGATGTCGTTTGGCAGAGCTGCA
CATACGAAGAATCACAACTTTTAGAAAGAATACAGTATCATTGTTCCCTT
ATTGTTGCAGGTGCTGTCAAAGGATCATCGTACTCCTTAACTTGTAAAGA
ACTCGGTTGGGAGACATTATCGGATAGGAGGCACATTCATCGACTATTAC
TGTTTTACAAAATTATTCATGGTGTTACTCGTAGCTATCTGTCTGATTTA
CTCCCTGCAGTCATTTCATCAACATGTTTGTATGATCTTCGTAACAAAAT
GAATCTAAGATCGCTGACAGGCTCAACAAACCGTTTTGTTAAGTCCTTTG
TTCCATACTCATTAACTCATTGGAACAAACTGGATGTTGGAATACGAAGT
TACAGCTACTCTAAGTTTCGGATGTACCTATTTAAATGTGTACGACCTTC
CAAACCTAGTCATTTCAGTTATGGTCCCCGATATGCTTGTTCACTCTTGG
CACGATTTCGCATTGGCACCCACGGCTTGAATGACAGTCTCTTCAGTCGT
GGGCTAGTTGATAGCCCGGCATGTTACTGCGGGTGTCAATGCGAATCAAT
CTCTCATTTCCTACTTCACTGCCCATTACATATTAACCAGCGTTTACTTT
TACTTGACCAACTTTCCAAAATTATAGGACACATTTTCGACATCAAGTCA
CTCTCGGACGATGCTATTAAACACCTGTTAATCTACGGATCATCTCTTTG
CTCCCACAGTTCAAACTGTAACATAATGAGTTTAACTCAAGAATATATCA
TACTTACGAAGCGGTTCTCACATGGAAATTGGTACATCCCATCCTATTAG
TTATATTTAGTCGGGGGGAAGGGAGGTTTGCGCTTAGGAAACGAATCATA
TTGCAACACATGTATTGAACGCTTTCATTGTTCTGTTGTTATTGTGTAGA
TAAGTATATTACTGTTTAAGATATTCCTGTTTTGTATGATGGCACGTAAT
ATAAGTTTTGTTAACTTGAGTTCGTTGCCATCCTGTCTGTATCTGTTGTT
TATGTTGTTTAATAAAAAAA Coding sequence (CDS) from alignment at Sc0000951:7237..10006- >transcript:BL81917_cuf0 ID=transcript:BL81917_cuf0|Name=transcript:BL81917_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2550bp|location=Sequence derived from alignment at Sc0000951:7237..10006- (Branchiostoma lanceolatum)
GCCTTTTCGATGTATGTACCCAAACCTTATGCACGGACTGTATGGGATTA
TTCTCGCATTGATTACGATAAACTGTCTGAATTTTGTTCCTGCTCGGAAT
GGAATGACATTTTTCTCCTTCCATCTGTAGACGAAGCTGCGTCAAAACTA
TGTCAACTTATTATTGAGGCAAAAAATGTTTGTATCCCCAGCAAAAGCAT
ATTAATTAGACCAAAAGATAAACCCTGGATAACAAAAGAAATCCGGAAGC
TTATGCGATCCCGTAATAAACTTCATAAGTTGGCTAAGCTATCAAACTCT
CAGGTTAGTTGGGCAGCATACCGTAAAATCCGCAATAAGCTTTCGAATGC
CATCTCATCCAGCAAGTCCAAGTATTTTTGTCGTCTGTCTGACTCTTTAA
AGGATCCTTCTTTATCTGGCAAGAAGTGGTGGCATGTAGTAAAACACTTT
TACAAACCTAAAACAATTACTTCTATTCCCCCTTTGAACGAAGGCAGCAC
GTTTATTGTTGACTCGATGGCGAAGGCTTCACTTTTTAATGAATACTTTG
TCTCTCAATCCTCCATAGATGAATCTAATGCATCGCTGCCTGAATTTCAC
TACCTGACAAGTAGTCGTTTACTTCATGTTACCACCACACCAGAAGAAGT
TCAACTTTATGTCAAAGAACTAGATACTCATAAGTCACACGGATATGACA
ACATAGACAACCGTTTCCTAAAAATAGTTGTTCCGTTTATAGCTGACAAA
ATTAGTTACGTATTTAATCTATCATTGTGTCATGGTCATTTTCCTAAAAT
CTGGAAATATGCTAATGTTGTACCTATTTTCAAAAAGGGCGATGCTAGTG
ATAAGAGCAACTATCGTCCCGTGTCCCTACTTCCAACCCTGTCGAAGGTC
CTAGAAAAAATAGTCTATAAGCACCTTTACAACCACCTGATGCAAAATAA
TCTTTTGTATAGGCTTCAATCCGGTTTTATAAGAGGCGATTCTACTGTTT
GTCAATTAGCGTATTTTTGTCATACTATTTTAAAAGCCCTGGATACCGGA
AAAGAAGTCCGAGCTGTATTTCTTGATTTTTCTCGGGCGTTCGATAAGGT
GTGGCATAATGGCCTTATTTTCAAATTACATTGTAATGGGATCGAAGGGC
CTCTTATAAACTGGATTTATTCATATCTCAGTGACAGATCTCAAAGGGTT
GTAATAGACGGTACATGTTCTTCCTGGTGTTTAGTTAGTGCTGGAGTTCC
ACAAGGGTCTGTATTAGGTCCCTTATTCTTTCTTGTTTACATTAATGATA
TTGTTGATAATCTTGTCTCCCAGCCATTTCTTTTTGCTGATGACAGCTCT
CTTCTTCATGTTGTTGATAATCCGATTCACTCCGCTTCCTGTTTAAATGC
TGATTTGGAAAAAATTCACACATGGGCTGTTCAGTGGTTAATGGAACTTA
ATCCAACCAAAACAGTAGAAATGATCTTTTCAACCAAAAGAGCAAATTTA
GTACACCCACCTCTTCTCTTAAACGATTGTGTTATCCAGTCTGTATCCTC
CCACAAACATATCGGAGCTACATTAAGCTCCGATATGTCCTGGAAATCTC
ATACCAACTACATGTTGAACAAAATTTCCAAAACTTTGGCCACATTTAAA
GGATTGAAATTCAAACTACCTCGTAATGTTCTGGAGATATTGTACAAATC
GTTTATTCGTCCCTGCTTAGAGTACGGTGATGTCGTTTGGCAGAGCTGCA
CATACGAAGAATCACAACTTTTAGAAAGAATACAGTATCATTGTTCCCTT
ATTGTTGCAGGTGCTGTCAAAGGATCATCGTACTCCTTAACTTGTAAAGA
ACTCGGTTGGGAGACATTATCGGATAGGAGGCACATTCATCGACTATTAC
TGTTTTACAAAATTATTCATGGTGTTACTCGTAGCTATCTGTCTGATTTA
CTCCCTGCAGTCATTTCATCAACATGTTTGTATGATCTTCGTAACAAAAT
GAATCTAAGATCGCTGACAGGCTCAACAAACCGTTTTGTTAAGTCCTTTG
TTCCATACTCATTAACTCATTGGAACAAACTGGATGTTGGAATACGAAGT
TACAGCTACTCTAAGTTTCGGATGTACCTATTTAAATGTGTACGACCTTC
CAAACCTAGTCATTTCAGTTATGGTCCCCGATATGCTTGTTCACTCTTGG
CACGATTTCGCATTGGCACCCACGGCTTGAATGACAGTCTCTTCAGTCGT
GGGCTAGTTGATAGCCCGGCATGTTACTGCGGGTGTCAATGCGAATCAAT
CTCTCATTTCCTACTTCACTGCCCATTACATATTAACCAGCGTTTACTTT
TACTTGACCAACTTTCCAAAATTATAGGACACATTTTCGACATCAAGTCA
CTCTCGGACGATGCTATTAAACACCTGTTAATCTACGGATCATCTCTTTG
CTCCCACAGTTCAAACTGTAACATAATGAGTTTAACTCAAGAATATATCA
TACTTACGAAGCGGTTCTCACATGGAAATTGGTACATCCCATCCTATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000951 | genome | Sc0000951:7237..10006 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL81917_cuf0 |
| Biotype | protein_coding |
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