transcript:BL81803_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL81803_cuf0
Unique Nametranscript:BL81803_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL81803_cuf0

>transcript:BL81803_cuf0-protein ID=transcript:BL81803_cuf0-protein|Name=transcript:BL81803_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=152bp
SAHSHVRYRMGDPKRALIQVCSFGTTYLLGTLPLIHRILSDVYNESVDDV
TWMHVRHILLLVISGFFYASEVPQRYFPGMCDVIGHGHQIFHVVGSASLL
TQMQAIFADLQNRGHLDLVRPTDLSITTYYVVLLVSYGLIAFVFVRKALS
IK
Run BLAST on NCBI

mRNA from alignment at Sc0000171:155925..156985+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL81803_cuf0 ID=transcript:BL81803_cuf0|Name=transcript:BL81803_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1061bp|location=Sequence derived from alignment at Sc0000171:155925..156985+ (Branchiostoma lanceolatum)
CCAGTGCTCACTCGCATGTTAGATATAGGATGGGGGATCCAAAGAGGGCT
CTGATTCAGGTATGCTCATTCGGCACCACGTATCTGTTGGGCACGTTACC
TTTAATACACCGCATTCTCTCGGACGTCTACAACGAAAGTGTGGATGACG
TCACTTGGATGCACGTCCGTCACATCTTGCTTCTTGTGATATCAGGTTTC
TTCTACGCGTCAGAGGTACCACAACGGTACTTTCCCGGCATGTGTGACGT
CATTGGCCACGGACATCAGATATTCCATGTGGTTGGTTCTGCGTCTTTGC
TGACACAAATGCAGGCGATATTTGCAGACTTGCAGAACCGCGGCCATCTT
GATCTGGTTCGTCCTACCGACCTGTCAATCACGACTTACTATGTTGTACT
TCTTGTGTCGTATGGCCTCATTGCTTTCGTATTCGTTCGCAAGGCGTTAT
CAATTAAGTAGCTCTCTTCTTCCTATCCTGAATTCAAAGCTACAAAGGGG
TTCTCATAAACAGGTAGATACTTTAATGTAGCTCCCGACCAAAGGTTTTG
CCCATTCTGTCCAAATCGAATTGAAGATGAGTTTCACTTCATTATGGAAT
GCACTAAATATGATGCTCTACGCGATGAGTTATTCACCTCTCTCAATTCA
AGTACTTCATATTTTAAGACACTCAATGCCACAGATAGATTTGACTATAT
GTCTAAATGCAACAGCTCATACAGTGTTAAAATAGGCAAATATATAAAAG
ATTGTTTTGTTATTAGAAAAATAATGACACTCAAAATTAGACCAACTTGA
ATCATGTAAAACCTAAGATAGTCATTTTGTTGTAGTGAATAGTTTTATTC
CACACTTACGTCTTGTGCTATGTTTACTGTTGTTGCCATACTTTGTACCT
GCTACAATAGTCGCGCAATTAAGTTCCTATGCACTCCTTGATACTAATTA
TCATTTTTATCATGCACTATACAAGCACTTGTAAACAAAACAGAAAACTG
CTACATGGATTCATCACATAACATGGTTTCACATCATGTACCATGTATTC
AGCATAATGGC

Coding sequence (CDS) from alignment at Sc0000171:155925..156985+

>transcript:BL81803_cuf0 ID=transcript:BL81803_cuf0|Name=transcript:BL81803_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=459bp|location=Sequence derived from alignment at Sc0000171:155925..156985+ (Branchiostoma lanceolatum)
AGTGCTCACTCGCATGTTAGATATAGGATGGGGGATCCAAAGAGGGCTCT
GATTCAGGTATGCTCATTCGGCACCACGTATCTGTTGGGCACGTTACCTT
TAATACACCGCATTCTCTCGGACGTCTACAACGAAAGTGTGGATGACGTC
ACTTGGATGCACGTCCGTCACATCTTGCTTCTTGTGATATCAGGTTTCTT
CTACGCGTCAGAGGTACCACAACGGTACTTTCCCGGCATGTGTGACGTCA
TTGGCCACGGACATCAGATATTCCATGTGGTTGGTTCTGCGTCTTTGCTG
ACACAAATGCAGGCGATATTTGCAGACTTGCAGAACCGCGGCCATCTTGA
TCTGGTTCGTCCTACCGACCTGTCAATCACGACTTACTATGTTGTACTTC
TTGTGTCGTATGGCCTCATTGCTTTCGTATTCGTTCGCAAGGCGTTATCA
ATTAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL81803gene:BL81803Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL81803_cuf0-E1BL81803_cuf0-E1-1564476830-365079Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL81803_cuf0transcript:BL81803_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000171genomeSc0000171:155925..156985 +
Properties
Property NameValue
Transcript idBL81803_cuf0
Biotypeprotein_coding