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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL81631_cuf0 >transcript:BL81631_cuf0-protein ID=transcript:BL81631_cuf0-protein|Name=transcript:BL81631_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=465bp
MTNRLKTFLILLLIVPRETSACSSRGDCRNRGLRSVPQDLSTDITKFSLQ
DNSITILNESDFLKYTKLRKVDLSSNKLTYLQSGTFSGLPQLSYISLQCN
HITNIDPGTFFNLPEIYHLNLNYNNLTNILPGTFTHLPELMGLFLAHNQI
TEIKSATFSDLPLLNTLLLAYNRIRVIQPGAFSNLPRLGRLILKHNLLTS
IHPNAFSNLPNHISLELLENPWHCDCRMAAIRKTTTSNNHASQIFKRKII
CQEPSNLRKKNFDDISPEDLICEKPKIMSFENNKGGTQVKGETLRLSCEA
SGIPKPDVTITLPSGLNATVESRGRVAVKASGSITITDVAAADAGQYTCI
AANPGGSASDKLFVEVGTPTSVMPGVSIGAPEISDVTTSTSAEQPDGMVF
TKPTIVRFKVSDNTLAQGETPPTSIVTLPPGLTTAVSRGRVTSTAGVTTI
GVSIGAAEISDVTTS Run BLAST on NCBI mRNA from alignment at Sc0000301:96030..100736+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL81631_cuf0 ID=transcript:BL81631_cuf0|Name=transcript:BL81631_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4707bp|location=Sequence derived from alignment at Sc0000301:96030..100736+ (Branchiostoma lanceolatum)
CGCAATCTACACACTGCGCATGCCCCATGTGACGTCTGGTGTAAAGCTTA
ACCCAGACGCTGATGAAGGCTGTGATTTTTCACTCGCACATTGTGGCGAT
TGTATGTCTGGCTGCTACATTAGCGTGAATCAGGTGCAGAGGAGGGAGTT
CTTTTTTATGATCAGCAACCGGAGTTGTCAAGATTCAAACCTACGGGAGA
AAGCTTGCTTAAAAAAAGGTTGGTCTACCTGTAAGTTAAACTTGGTTTCG
TTGGTATCACAGGTCCAGGAGAGGAATTTGTGTTCGATGTTGTCATTGTT
GAATGCTGAACTATCACGAAGGAAACTTACGGGGAGGGATAGCTGTACAT
AGCTAGGTTGGTCTGTCTTTTCTGAAAAATGTTTTAACTGTAATTTCCAA
CACAAAAATTAGACTTACCCAATTTTTGACTGTTCGACACCAATCTTTGT
CACTCCTTGACAAAGACTGGTGTCGTACAGTCGAAAATTTGGGTAAGTCC
AATTTACAGTTAAAACTTGTTTCAGAATGATTTCTACCAACACAGATGAA
CTTTTAAGCTATGGTCTGTCTTTTGTTTTGGGGCTAGTTGTAACTGAATC
ACTGACAACTTATGTAAGGCTTGCTATCAACATCACATCAGCGTCTGATT
ACTTTCTGTTATTGCGGGCCACAGTAATTCTATATCTGCCGTGCATGCAT
AAGGGTGTGGCACCGTGAAGGAAAAAAGGAAATACCGTCGCCTGTACACA
ACAGGTGTGTTTGGTGCGGAATAGCAGCCTGTGAAAATATCCTGCATTTG
GATCAATGTATGCATTGGCGGCAGAATGTTCTTCCAGTTCTGCTGATAAT
GTTGAGGACGAGGCCCTAGCAAAGATTTTTTTTTAAAGGTGGATTTAGAT
AACCGACATGTTTCGTAAGACTAGTTTATACCTTACAGGTTAGTTTACTT
CTGACTGACTGCAATGAAAACCAACGGTGAAAAGACAGGTTGATAGAATG
TATGCTGGTCTATTGTTTTAATACATTGTATCTCTAGTGTAGTGCCTGTG
ACCCTAAGATTGCCTTTAGGCAACGTCGGAATATCCAGAACATTACAAGA
AGTTCGATCCACAGAGAAAAACTCCCAGTATGTGTGTACGTCAATGAAAC
CTTAAGAATGTATAAAATGGAGAAAAATGTTTGCAATATTGTAGCCTGCA
TTGTAGGCTTCCCCGCGGCGATTTTTCAACTTATCGGGGCCAGATTCTTT
TGCTAGGGGGCCGTATCTGCGTGGGGACCGTACCTGCTAGGGCCCAGTAT
CTGCTTGGGATCCTGTAACCGCTGACAGTATCCCAAGCAGATACGTGGCC
CCAGCAGGTACGGTCCCCACGCAGATACGGCCCCCATGCCAAAGAATCTG
GCCCGATAAGTTGAAAAATCGCCGTAGGGAAGCCTGCAACGGAGGCTACG
ATGTTTGGTCGAAAGCCATATTGCGAATCGAAGGCCGTTTGGGTGTTTGA
TACATTTTGTCTGTTACATAATAAGTCTGAGTCACATGGCTACGCCCTGC
AAAATGTGTTTGAAGCAGTCCGACATAATGTATCCACTTAAGGACGGCAA
ATTATTATTTTTGGCGATGACTCAGGGGCGGAGATGATAATATTGAGTTG
AAAATATTCTAGATTGAGTTGAAAATATTCTAAGAATTTCGCCAATGCCT
TCCCTTAAATTGATTTCGTTACACCTCAATAACACAAGAAGCTTTGAATA
AATCTGTATGATATTTTGTATGTGGTTAGGTGTCTACAAAGCGAAGCGCA
AGTGACATTTAGGGCCTTATAGCAGCGTTTGCAGAGGCCTTGTTGTTGAA
CCCTTTCGAAGTGGATATCACAAGAAAAGCTGAATATAGTTCTGCGGTTT
CCGGCATGTAGGTAGATTTGGTGGATATTGGCTGAATAAGAGGCTAATAG
GCCGATCCCAAAGCAACGCCCCCTGTTCGATTTCGAACACCTCCGTCAAA
AACAGGGTTTGACGGACCAAACGTGGCCGCCGCGGCTAGGTTGAAAATAA
TGCCACTGACTTCGGTTTAGCTTTTGTGGCACTGAAACCCTTCCAGAGCG
GGCCAAATAAGAATGCTATGTCTTCTTTGTTGAAGTCTGTATCCACCGGG
TAGAGTTGTTTAAGGAGGGGGTAGGTGTAGTTGCGGTGAGAGCGTAATGT
TTTCGGTCAATGTTAAAGCGGTATGCGCCGCATAGCTTTCCCTTGTCGGT
GGGCATCAGCGCCCAGTTTCTGANCCAGATATACGTACCCTGTTTAACAC
GTGCCATTTCTGCCCCGCCAACGATGTTTGTGACGGAGGTGGGCTGAATA
GAACAGGGGGTTCTATGGGTCTTCTATTCGTTCGATATGGTGTTCGACAG
GATCGGTCTATTATGAACATCAAAGCCTGATTTACAAAATTAATGAGGAA
ATTTTATAATTCCGCTGCGTTCCAGGATAAGAATTATTTTTTGATATGTA
ACATTTGTTACTTAGAAAGAGAGGAGCGTAGCAGATATTGAATTTGCATA
TGTGGACCTTATTTTGCATAATTGATTAGAAAATAATATGAAATCATAAC
ACAATAGTGGTAAATGATGGTAATTTCAGAACACCGATGTCACATTTCAC
AAGTCGCACGAGGAAAAAGTTGAGTCATACAAGTGAAGTGAAGTGAAGTG
AACTTTATTGCTCAACAATCGTACATGATACAATGTATGGCATGAAATCA
ACAATCTGTTCTACAAGGCTAATCTATCCTACAATTCTAAGTACAAAATA
TTTTCGAAACCAGTGTATTTGTTACAATATAGAGTCATGTATGGGTAATT
CTGTCTCACTTTTCGAATGATTTATGGAGAAATTGACCTATGGATATAGG
AGTCGGACATGACAACAGTATATAGAAAATATCGCTACATTAGGCCGGTA
CATATGTTTTAAAGCAAAGTTAACGGTGTCACATGTCTAGGACATTTACT
GTTTAAGTTGGTTCGTGGATGTTGTACTAATGTTTTTCTTGTTTTATTTC
TGATCAATCTGCTCCATATAGAATGATGGATCATACAATTAAAGAATGGT
TGTAGTGCTTCGGAGTTATAGGTTATGTGTGTCCCACGTAAAAAAATGGT
CTGTAATCCCCTACTTATCTATTCTTTATCACCTACATTTGCTTGAGGAT
GTTAGCATTGACTGTTGAATGTATTGTGGGGAACTTAATTCTACTTTATT
ACAAGGGGAAGTATATTTTCAGTTGATTAAAAGTATGACTCCTTTTGACA
TGTTTAGAAAATGACAAACAGACTGAAGACATTCCTGATTCTTCTACTCA
TCGTTCCAAGGGAGACGTCAGCCTGTTCATCACGCGGTGACTGCCGGAAC
AGGGGTCTCAGAAGTGTTCCTCAGGACCTGTCTACAGACATCACTAAATT
CAGCTTGCAGGACAATTCGATTACAATCTTGAATGAGTCTGACTTCTTAA
AGTACACGAAGCTGAGAAAGGTGGACCTATCATCTAACAAGTTAACGTAC
CTTCAGTCTGGAACATTTTCAGGTCTACCACAGCTCTCGTATATCTCACT
ACAATGCAACCATATAACTAACATTGACCCCGGTACATTCTTCAATCTAC
CGGAAATCTATCATTTAAACCTGAACTATAACAATCTAACTAACATTCTC
CCAGGCACATTCACACATCTACCAGAGCTCATGGGGTTGTTTCTAGCCCA
CAATCAAATAACTGAGATTAAATCTGCCACATTCTCAGATTTACCCTTAC
TCAATACTTTACTTCTGGCGTATAATAGAATACGTGTCATTCAACCTGGG
GCATTTTCAAACCTACCCAGGCTTGGTAGGCTTATCCTGAAACATAACCT
CTTGACTAGCATCCATCCTAATGCATTCTCAAATTTACCGAATCATATCT
CTCTGGAACTGTTGGAAAACCCATGGCACTGCGACTGTAGAATGGCAGCT
ATCAGGAAAACGACAACTTCAAATAACCATGCCTCGCAGATATTCAAGAG
AAAAATCATTTGTCAGGAACCTAGCAACCTCCGTAAGAAAAACTTTGACG
ATATAAGCCCTGAAGATCTAATCTGTGAAAAACCAAAGATTATGAGTTTT
GAAAACAACAAAGGGGGCACACAGGTAAAGGGAGAAACTCTCCGTTTGTC
CTGTGAAGCTTCAGGTATACCTAAACCAGACGTCACGATCACCCTCCCGT
CTGGGCTGAATGCAACTGTTGAGTCAAGAGGGAGAGTGGCAGTAAAGGCG
AGTGGTTCCATCACCATAACTGATGTTGCTGCTGCAGATGCTGGTCAGTA
CACATGTATTGCAGCAAACCCAGGTGGTTCTGCATCTGACAAACTGTTTG
TTGAGGTAGGAACCCCAACATCGGTTATGCCAGGCGTATCCATTGGTGCT
CCGGAGATCTCTGATGTCACAACCTCAACATCTGCTGAACAGCCTGACGG
CATGGTGTTCACAAAGCCAACAATTGTGAGGTTTAAGGTTAGCGATAACA
CACTAGCGCAGGGGGAGACTCCTCCCACTTCCATTGTCACTCTCCCACCT
GGACTAACAACTGCTGTGTCACGTGGGAGAGTGACGTCGACTGCGGGTGT
GACCACCATTGGCGTATCCATTGGTGCTGCAGAGATCTCTGATGTCACAA
CCTCAAC Coding sequence (CDS) from alignment at Sc0000301:96030..100736+ >transcript:BL81631_cuf0 ID=transcript:BL81631_cuf0|Name=transcript:BL81631_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1395bp|location=Sequence derived from alignment at Sc0000301:96030..100736+ (Branchiostoma lanceolatum)
ATGACAAACAGACTGAAGACATTCCTGATTCTTCTACTCATCGTTCCAAG
GGAGACGTCAGCCTGTTCATCACGCGGTGACTGCCGGAACAGGGGTCTCA
GAAGTGTTCCTCAGGACCTGTCTACAGACATCACTAAATTCAGCTTGCAG
GACAATTCGATTACAATCTTGAATGAGTCTGACTTCTTAAAGTACACGAA
GCTGAGAAAGGTGGACCTATCATCTAACAAGTTAACGTACCTTCAGTCTG
GAACATTTTCAGGTCTACCACAGCTCTCGTATATCTCACTACAATGCAAC
CATATAACTAACATTGACCCCGGTACATTCTTCAATCTACCGGAAATCTA
TCATTTAAACCTGAACTATAACAATCTAACTAACATTCTCCCAGGCACAT
TCACACATCTACCAGAGCTCATGGGGTTGTTTCTAGCCCACAATCAAATA
ACTGAGATTAAATCTGCCACATTCTCAGATTTACCCTTACTCAATACTTT
ACTTCTGGCGTATAATAGAATACGTGTCATTCAACCTGGGGCATTTTCAA
ACCTACCCAGGCTTGGTAGGCTTATCCTGAAACATAACCTCTTGACTAGC
ATCCATCCTAATGCATTCTCAAATTTACCGAATCATATCTCTCTGGAACT
GTTGGAAAACCCATGGCACTGCGACTGTAGAATGGCAGCTATCAGGAAAA
CGACAACTTCAAATAACCATGCCTCGCAGATATTCAAGAGAAAAATCATT
TGTCAGGAACCTAGCAACCTCCGTAAGAAAAACTTTGACGATATAAGCCC
TGAAGATCTAATCTGTGAAAAACCAAAGATTATGAGTTTTGAAAACAACA
AAGGGGGCACACAGGTAAAGGGAGAAACTCTCCGTTTGTCCTGTGAAGCT
TCAGGTATACCTAAACCAGACGTCACGATCACCCTCCCGTCTGGGCTGAA
TGCAACTGTTGAGTCAAGAGGGAGAGTGGCAGTAAAGGCGAGTGGTTCCA
TCACCATAACTGATGTTGCTGCTGCAGATGCTGGTCAGTACACATGTATT
GCAGCAAACCCAGGTGGTTCTGCATCTGACAAACTGTTTGTTGAGGTAGG
AACCCCAACATCGGTTATGCCAGGCGTATCCATTGGTGCTCCGGAGATCT
CTGATGTCACAACCTCAACATCTGCTGAACAGCCTGACGGCATGGTGTTC
ACAAAGCCAACAATTGTGAGGTTTAAGGTTAGCGATAACACACTAGCGCA
GGGGGAGACTCCTCCCACTTCCATTGTCACTCTCCCACCTGGACTAACAA
CTGCTGTGTCACGTGGGAGAGTGACGTCGACTGCGGGTGTGACCACCATT
GGCGTATCCATTGGTGCTGCAGAGATCTCTGATGTCACAACCTCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000301 | genome | Sc0000301:96030..100736 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL81631_cuf0 |
| Biotype | protein_coding |
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