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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL81593_cuf0 >transcript:BL81593_cuf0-protein ID=transcript:BL81593_cuf0-protein|Name=transcript:BL81593_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=454bp
MMPHKLGLTATSYSHVYILACLLAYVGFSCFFATMYTDGTSLSVRTPLLK
MPNRRFSREHGEEVCDIKQNFMFVKVHKAGGTTTTCIFQRLGYEHNLTFV
LPVAKTDVGWPNFLKPEDFIPSADGTYNVLVDHTVYHRQLLDHLMPPDTV
YISILRDPLAQLRSVFNWYGLAIDFHGLEGPDPVASFLENPKKFQIPFAI
AKHTPHTLAQNLMAYDLGFPLGLSDDQSFVDEFIQKISREIDLVLILEHY
AESLVLLRRMMCWTLKDILYDVVPKNGRRYQKPTTNTTLIQMHRKWSNVD
YQLYDYFNATLWRKIQEEDQDFHQEVRHFEKVLQSTTTYCTNTIIKVPVI
TKTVNATETINGTSSGTTNERNKKAAFTWGVNETAGILTIPRTAWHDEFD
VNPSLCLKLKMEWLDWAHVLKTKHKMPANVSATVIKYPKPRTLANLMMRM
FHID Run BLAST on NCBI mRNA from alignment at Sc0000261:28107..32549- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL81593_cuf0 ID=transcript:BL81593_cuf0|Name=transcript:BL81593_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4443bp|location=Sequence derived from alignment at Sc0000261:28107..32549- (Branchiostoma lanceolatum)
CCTCCATCCTCCCATGTTTCCACGAACGTTTACGGTTAAGACTTACTCAG
AGACAGCTTGGGGACACAACTAGGAACTATATAGCAGCAACGGCTTAGAA
AATCCTGCTATTTTGCCAAAGAAGTAAACGGGGTGAATTCTAAGGTAAGA
AAAGCAGCCTTTGTTTTGTGTTTCCAAGCATAACATAGGAGAAAGGTAAG
GTGTCAGCAAGAAACATGTCGGGCCTGCCCAGCGTACTCTACAAAGAAGA
GGCTGGGCTCTCGCTGGTTTTTATTCACCAGGTTCACCAGGTTGTATTAC
AGCCAGTAGGCATGTAGGTACCCATTTCTGAGTAATAAAGCTGTTGTAAC
GTGCTCGAGGCACCTCCTCAAACACGGGGCCCCCATTCTATGTCTCTTCC
GAAAAGCGCAGTCCCTGCAAGGATACCCTTCCCGGATTCGATCCAGGGTC
TCACAAATCCAACAAATTGGAAGCAGGAGGCTCAACTGCGATGCCGCTAC
CAATTGAGCTACAGGCACATCCCTTTTTGACGTGTTTTAGGTGTTTTTGT
CGGCCTTTCTATTTTGTCCTAATCTCCAAGCGGTCGGACTCTTTACTTTA
CTCGTATGTCGCCACAATTGTGGGCTGACCCCAAAATGCCTTTCACAAAT
TGTCGAATATGTTACTGAGTCTTTAAAGTCAGGCTTGACGATTTCTGTTT
AAGATATATATAATCTCGCACGTAATGGATAATCGAGCATAAGAAAGGAA
AGGGATTTATAATCATATCCATGTGGCGGCTTAAATGTATAGCCCTTAAA
GCAGTCAATACCTCAGGCTCACATGTCATTAGTTCTGTAGTGATGAATAC
CTTTGACAGCACGACTACGCTTGTGTTAAACAAAAACATGAATAACTGAA
AATCTTTGTGTCACTGTAGGATTGTACATGGTGAAGACATGATGCCCCAC
AAGCTAGGACTGACGGCAACATCGTACAGCCATGTGTATATCTTGGCGTG
TCTCCTCGCCTATGTGGGGTTCAGCTGTTTCTTCGCAACCATGTATACGG
ATGGTACCTCACTGTCCGTCAGGACACCGCTTCTTAAGATGCCCAACAGG
TGAGCTACAGATACACTAAAACAAGGCCTCATGAAAGTACTTGCACACAT
CTCAATCTTTAAAACATTCTTCTCCAGCGGAAAACTACTAGGGTCTATTT
AGTAACCATTCACGGGTTTCACACTTCCCAGAAGTACTTGTGCTGGGATC
CGGAAACGGATATTATTATTCTCCAGGCGACAACAATTTCGCTCAGCGTG
CGAAACCACCAAATATGATGGTATGTGGGCGCAGGAAATCTGATATAACC
GAGTAGAACACAAAACACAACTCAGAGACGGCAGTTTGGTGCAGAACCGT
GCAAAGGACAGTGTTGATTTAACATGTTTAATCTGTAATCCCTTTCTAAC
GGAACACAAGATGTGGCCTACATGTATGAGGTCATCGATCGGGCGAAACC
AACTAAACATCGGCGACGTGTTGGCTAGTTGTCCAGAAAATACCTTTGTC
CACAAAACTTGTCATCTTCACACTCTCACTATTATTTGCCGGACAGCTCA
TAAGTTCCTGTGTTTTACCGTAATTCTACTCAAGGTTTTAGCTGTTTCGA
ATTCCTTCTTTGTTTCGCATGCTGAGCGAAATTGTTGTCGCCTGGAGAAT
ATCCGTTTCCGGATCCCAGCACAAGTACTTCTGGGAAGTGTGAAACCCGA
GAAAATAGGGGGTTGTCCGCCCTAAAGTCCTGGAAGGGCGGACAACTAGC
AAACGTAAACAAATTTCGTTTCACCCGGTTTCTCCTGTATCCGTCCCCTC
AGGGTATGAAATACCTTACAAATCAGATCTATCCTCATGCCAACTAGACT
GGCGAGCTAAACAAGTGTTGACCAAACTGGGAATATTGGGTTGCCATTCT
ATTCAATTCACTGGGTCTCCCATACCCACATCCTTTGTCAAATATTTTGT
GAGTGAGTGAGTATGGGAGCCCAAGTAAACTACTAGAAAATAGGATAGCA
CCCAGGCTATGTCACTCCTGTAGGAGAATAAACATACATTGGTTTGATGT
TAGTCTTAGCAAATGTAGCTGAATAGATTTTAAGCAGACAATGTATTTGC
ATTGATCGTTTTGAAAATCGATCTGAATGAGCACTAAGATGTGATGAGAC
CCTAAAGGTTCATTCTAACCCAAAATGCCTCCAAATTGGCCCAGAATTTT
CAAGGAAAGCCAGATTTTCTAAGATGTTAAGGGGCCACTATAGATATCAT
GTTAGTCCCAATTAGGTGCTGTGGTGCGTAGCTCAATGTGACGTCATCAC
ATCTTAGTGCTCATTCAGATCGATTTTCAAAACGATCAATGCAAATACAT
TGTCTGCTTAAAATCTATTCAGCTACATTTGCTAAGACTAACATCAAACC
AATATCATATCTAGCAAGCTTTTGTACGGGATATGTTATTGGAATATTTT
GTCCGCTTGACAACATCAACAATCAAAAATCTCACAATTGCTAGTTGGGC
CCTAAAAGAATAAGACAAATTTAGTTTGCAATTTAGGCAAACATTTCGCC
TTGTAATTGATCATTAATTTGACATACTACTTTGATGCATACAAATAATA
ACTATCTGTAATGCTAGTAAATCATGGTAAAAGAATGACAACGATATTGA
CAACTGCGATCAAATAAGAAATCAACTAGTTTTTCAGAAATTCAACTTTT
GCATCCTGGAAATAACTCTGTTTCATTAACAGGAGATTTTCGAGGGAACA
TGGTGAAGAAGTCTGTGACATCAAGCAGAACTTCATGTTCGTGAAGGTAC
ACAAAGCAGGAGGCACAACAACGACCTGCATCTTCCAACGCTTAGGGTAC
GAACACAACCTGACTTTCGTACTGCCTGTGGCCAAGACTGACGTCGGCTG
GCCCAACTTCTTAAAACCAGAAGACTTCATACCATCGGCGGACGGTACTT
ATAACGTGCTAGTTGATCACACAGTCTACCATAGGCAGTTGTTGGACCAT
CTCATGCCTCCTGATACTGTGTACATCTCTATATTGAGGGATCCACTGGC
TCAGCTCCGCTCAGTTTTCAACTGGTATGGCCTTGCAATTGATTTCCACG
GGTTGGAAGGACCAGATCCAGTTGCGTCATTTCTTGAAAACCCCAAGAAA
TTCCAAATTCCTTTCGCAATTGCAAAACATACACCACATACCCTTGCACA
GAACTTAATGGCGTACGATCTTGGCTTCCCTCTCGGACTTTCCGATGACC
AATCGTTTGTTGATGAGTTCATCCAAAAGATATCTCGAGAGATCGATTTG
GTTCTTATCTTAGAACATTACGCCGAATCTCTTGTCTTGCTGAGGCGGAT
GATGTGCTGGACATTAAAAGACATTCTTTACGACGTCGTACCCAAAAATG
GTCGGAGATACCAAAAACCGACAACAAACACAACACTAATACAAATGCAC
CGAAAGTGGAGCAATGTAGATTATCAGTTGTACGATTACTTCAACGCGAC
GCTTTGGCGGAAGATTCAAGAAGAAGACCAAGACTTTCACCAAGAAGTGC
GCCATTTTGAAAAGGTACTTCAGTCAACGACTACTTATTGTACCAATACA
ATCATTAAAGTACCAGTCATTACCAAGACAGTGAACGCAACAGAGACAAT
TAACGGAACATCTTCAGGCACGACGAATGAAAGAAATAAGAAGGCGGCTT
TTACTTGGGGAGTTAATGAGACAGCTGGTATCCTAACCATACCAAGAACA
GCTTGGCATGACGAGTTCGACGTAAATCCGAGCCTGTGTCTGAAACTCAA
AATGGAGTGGCTTGACTGGGCACATGTTTTAAAGACGAAACACAAAATGC
CAGCAAACGTTTCGGCCACAGTCATCAAATACCCAAAACCAAGAACTCTT
GCAAATCTTATGATGAGAATGTTTCACATTGATTGAAAACATCATGAAGT
TATTTGGAAAATACCTTGTGGTATATAACAAAGCTATAACTGTGTTATAA
CTAGGACTAATATGCATTATAATGATGCAATTCTAAGAATATGTTGGACT
CTATCGCCAACTTTATTTCATGTTCCTAAGGAGTGTAAGAACGATATGCA
GACTAGAATATTATTCCGTAATGCTAAGATATTAATATAAATGTATCGCT
GCGTAAATTTAGTTGTTTAAGAAAGGGGTCAATAACTATAATCTTTTAAT
TTGTTTCTATTCCGTTGTGTGTGTATGGAAATCTTTCAATATGCTGATTT
TTCCTGTTTTTTTAAAAATATTTTTTGATTGAACGACAGGAAATAAACGT
TACTGTTGATGAAGTCAGGAACCCGAGAGTGGAACATGTAATGTGTGAAA
TGGTTACATCATATTCTATCAAGAATTCTAATTACAATCTCAC Coding sequence (CDS) from alignment at Sc0000261:28107..32549- >transcript:BL81593_cuf0 ID=transcript:BL81593_cuf0|Name=transcript:BL81593_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2730bp|location=Sequence derived from alignment at Sc0000261:28107..32549- (Branchiostoma lanceolatum)
ATGATGCCCCACAAGCTAGGACTGACGGCAACATCGTACAGCCATGTGTA
TATCTTGGCGTGTCTCCTCGCCTATGTGGGGTTCAGCTGTTTCTTCGCAA
CCATGTATACGGATGGTACCTCACTGTCCGTCAGGACACCGCTTCTTAAG
ATGCCCAACAGGAGATTTTCGAGGGAACATGGTGAAGAAGTCTGTGACAT
CAAGCAGAACTTCATGTTCGTGAAGGTACACAAAGCAGGAGGCACAACAA
CGACCTGCATCTTCCAACGCTTAGGGTACGAACACAACCTGACTTTCGTA
CTGCCTGTGGCCAAGACTGACGTCGGCTGGCCCAACTTCTTAAAACCAGA
AGACTTCATACCATCGGCGGACGGTACTTATAACGTGCTAGTTGATCACA
CAGTCTACCATAGGCAGTTGTTGGACCATCTCATGCCTCCTGATACTGTG
TACATCTCTATATTGAGGGATCCACTGGCTCAGCTCCGCTCAGTTTTCAA
CTGGTATGGCCTTGCAATTGATTTCCACGGGTTGGAAGGACCAGATCCAG
TTGCGTCATTTCTTGAAAACCCCAAGAAATTCCAAATTCCTTTCGCAATT
GCAAAACATACACCACATACCCTTGCACAGAACTTAATGGCGTACGATCT
TGGCTTCCCTCTCGGACTTTCCGATGACCAATCGTTTGTTGATGAGTTCA
TCCAAAAGATATCTCGAGAGATCGATTTGGTTCTTATCTTAGAACATTAC
GCCGAATCTCTTGTCTTGCTGAGGCGGATGATGTGCTGGACATTAAAAGA
CATTCTTTACGACGTCGTACCCAAAAATGGTCGGAGATACCAAAAACCGA
CAACAAACACAACACTAATACAAATGCACCGAAAGTGGAGCAATGTAGAT
TATCAGTTGTACGATTACTTCAACGCGACGCTTTGGCGGAAGATTCAAGA
AGAAGACCAAGACTTTCACCAAGAAGTGCGCCATTTTGAAAAGGTACTTC
AGTCAACGACTACTTATTGTACCAATACAATCATTAAAGTACCAGTCATT
ACCAAGACAGTGAACGCAACAGAGACAATTAACGGAACATCTTCAGGCAC
GACGAATGAAAGAAATAAGAAGGCGGCTTTTACTTGGGGAGTTAATGAGA
CAGCTGGTATCCTAACCATACCAAGAACAGCTTGGCATGACGAGTTCGAC
GTAAATCCGAGCCTGTGTCTGAAACTCAAAATGGAGTGGCTTGACTGGGC
ACATGTTTTAAAGACGAAACACAAAATGCCAGCAAACGTTTCGGCCACAG
TCATCAAATACCCAAAACCAAGAACTCTTGCAAATCTTATGATGAGAATG
TTTCACATTGATTGAATGATGCCCCACAAGCTAGGACTGACGGCAACATC
GTACAGCCATGTGTATATCTTGGCGTGTCTCCTCGCCTATGTGGGGTTCA
GCTGTTTCTTCGCAACCATGTATACGGATGGTACCTCACTGTCCGTCAGG
ACACCGCTTCTTAAGATGCCCAACAGGAGATTTTCGAGGGAACATGGTGA
AGAAGTCTGTGACATCAAGCAGAACTTCATGTTCGTGAAGGTACACAAAG
CAGGAGGCACAACAACGACCTGCATCTTCCAACGCTTAGGGTACGAACAC
AACCTGACTTTCGTACTGCCTGTGGCCAAGACTGACGTCGGCTGGCCCAA
CTTCTTAAAACCAGAAGACTTCATACCATCGGCGGACGGTACTTATAACG
TGCTAGTTGATCACACAGTCTACCATAGGCAGTTGTTGGACCATCTCATG
CCTCCTGATACTGTGTACATCTCTATATTGAGGGATCCACTGGCTCAGCT
CCGCTCAGTTTTCAACTGGTATGGCCTTGCAATTGATTTCCACGGGTTGG
AAGGACCAGATCCAGTTGCGTCATTTCTTGAAAACCCCAAGAAATTCCAA
ATTCCTTTCGCAATTGCAAAACATACACCACATACCCTTGCACAGAACTT
AATGGCGTACGATCTTGGCTTCCCTCTCGGACTTTCCGATGACCAATCGT
TTGTTGATGAGTTCATCCAAAAGATATCTCGAGAGATCGATTTGGTTCTT
ATCTTAGAACATTACGCCGAATCTCTTGTCTTGCTGAGGCGGATGATGTG
CTGGACATTAAAAGACATTCTTTACGACGTCGTACCCAAAAATGGTCGGA
GATACCAAAAACCGACAACAAACACAACACTAATACAAATGCACCGAAAG
TGGAGCAATGTAGATTATCAGTTGTACGATTACTTCAACGCGACGCTTTG
GCGGAAGATTCAAGAAGAAGACCAAGACTTTCACCAAGAAGTGCGCCATT
TTGAAAAGGTACTTCAGTCAACGACTACTTATTGTACCAATACAATCATT
AAAGTACCAGTCATTACCAAGACAGTGAACGCAACAGAGACAATTAACGG
AACATCTTCAGGCACGACGAATGAAAGAAATAAGAAGGCGGCTTTTACTT
GGGGAGTTAATGAGACAGCTGGTATCCTAACCATACCAAGAACAGCTTGG
CATGACGAGTTCGACGTAAATCCGAGCCTGTGTCTGAAACTCAAAATGGA
GTGGCTTGACTGGGCACATGTTTTAAAGACGAAACACAAAATGCCAGCAA
ACGTTTCGGCCACAGTCATCAAATACCCAAAACCAAGAACTCTTGCAAAT
CTTATGATGAGAATGTTTCACATTGATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000261 | genome | Sc0000261:28107..32549 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL81593_cuf0 |
| Biotype | protein_coding |
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