transcript:BL81544_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL81544_cuf0
Unique Nametranscript:BL81544_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL81544_cuf0

>transcript:BL81544_cuf0-protein ID=transcript:BL81544_cuf0-protein|Name=transcript:BL81544_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=139bp
DDGHRSVLISGHSFIRRLEAFICARTTTQAGRAVSRDFWLSRACVDFHSI
PGCNIPRYRSRLLPYIRDFPYDIVYVELGVVDLSNRALSPELVAQNLASL
AFSLQNIQAVQSVILGAPLCRPVNPPNMPDFPTRLQKFS
Run BLAST on NCBI

mRNA from alignment at Sc0000252:16484..16902-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL81544_cuf0 ID=transcript:BL81544_cuf0|Name=transcript:BL81544_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=419bp|location=Sequence derived from alignment at Sc0000252:16484..16902- (Branchiostoma lanceolatum)
TGGACGACGGTCATAGATCGGTCCTCATCTCTGGACACTCGTTCATTAGA
CGATTAGAGGCTTTTATTTGTGCAAGAACTACGACTCAGGCCGGTCGTGC
GGTTTCGCGGGATTTTTGGTTATCAAGGGCCTGCGTGGACTTCCATAGCA
TTCCAGGCTGCAACATTCCACGTTATAGGTCTCGTCTACTGCCCTACATC
CGAGATTTTCCGTATGATATAGTTTATGTAGAGCTTGGCGTCGTTGACTT
GTCAAACCGGGCATTAAGCCCTGAGCTTGTAGCCCAAAACCTCGCCAGCC
TGGCGTTTTCCCTTCAAAACATCCAGGCAGTACAATCTGTCATATTAGGC
GCACCCCTATGCCGACCAGTGAACCCACCTAACATGCCTGACTTTCCTAC
GCGCCTCCAGAAATTCTCG

Coding sequence (CDS) from alignment at Sc0000252:16484..16902-

>transcript:BL81544_cuf0 ID=transcript:BL81544_cuf0|Name=transcript:BL81544_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=417bp|location=Sequence derived from alignment at Sc0000252:16484..16902- (Branchiostoma lanceolatum)
GACGACGGTCATAGATCGGTCCTCATCTCTGGACACTCGTTCATTAGACG
ATTAGAGGCTTTTATTTGTGCAAGAACTACGACTCAGGCCGGTCGTGCGG
TTTCGCGGGATTTTTGGTTATCAAGGGCCTGCGTGGACTTCCATAGCATT
CCAGGCTGCAACATTCCACGTTATAGGTCTCGTCTACTGCCCTACATCCG
AGATTTTCCGTATGATATAGTTTATGTAGAGCTTGGCGTCGTTGACTTGT
CAAACCGGGCATTAAGCCCTGAGCTTGTAGCCCAAAACCTCGCCAGCCTG
GCGTTTTCCCTTCAAAACATCCAGGCAGTACAATCTGTCATATTAGGCGC
ACCCCTATGCCGACCAGTGAACCCACCTAACATGCCTGACTTTCCTACGC
GCCTCCAGAAATTCTCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL81544gene:BL81544Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL81544_cuf0-E1BL81544_cuf0-E1-1564476830-409583Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL81544_cuf0transcript:BL81544_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000252genomeSc0000252:16484..16902 -
Properties
Property NameValue
Transcript idBL81544_cuf0
Biotypeprotein_coding