transcript:BL81434_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL81434_cuf0
Unique Nametranscript:BL81434_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL81434_cuf0

>transcript:BL81434_cuf0-protein ID=transcript:BL81434_cuf0-protein|Name=transcript:BL81434_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=108bp
MKPTFLNDFNGRSFFLNDKFISNSTLHLFIDAAASLGYNNYVFYSSEITC
NGSLTSAELMQVYRFHIIGHITQHIDICFTVALCETVARVWAAAIRRHQV
TSIRPSPT
Run BLAST on NCBI

mRNA from alignment at Sc0000018:1470760..1471663-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL81434_cuf0 ID=transcript:BL81434_cuf0|Name=transcript:BL81434_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=904bp|location=Sequence derived from alignment at Sc0000018:1470760..1471663- (Branchiostoma lanceolatum)
CTTGACACCACCACAGCTCCCGGATCTCTATCCAAGTCATCCTGATATGT
GCCACGACGTGGGTGTCCCCCTAGCGGAGGAGGAAATGTTTTTCCCGCAC
TCCACAATGTTCTTGCCAATGGATAGAACTCGATACCGTGGCTATGGAAG
CCAGGTTTCCTCCGAACAAATTTGCTTAATCCCGAGAACAAATCCTTTTC
TTTCTGAGCCTGCAAAGCGAAATCCTTAAACAAATTCAATCCCTCATTGG
CCTCCTTAATTATATTTGATCTTACGAAATCCCACAAACCAAACAACAGT
CTGATCCCCCTAGCATTGACAGTTCACCTAGTATTCTTGTGTATGAAGCC
CACGTTCTTGAACGACTTCAACGGACGATCTTTCTTTTTGAATGATAAGT
TCATTTCTAATTCGACTCTTCATCTCTTCATAGATGCGGCTGCGTCCCTC
GGTTATAATAATTATGTTTTTTATTCGTCAGAAATTACCTGCAATGGCAG
CCTTACTAGCGCTGAATTGATGCAGGTTTACAGGTTTCACATAATAGGTC
ATATTACACAACATATAGATATTTGCTTCACAGTTGCACTTTGTGAAACT
GTCGCAAGGGTCTGGGCGGCTGCCATTCGGCGCCACCAGGTGACCTCAAT
ACGACCTTCCCCAACCTAGGTCAGATACCCATTTACACCTGGGTGGAGTG
AGGAAAGTCGTTTAAAGTGCCTTTCCCAAGGGCACAAGATCGGTGACATG
ACAGGATTCGAACCCGGGACCTTTTGGTTCTGAGCCGAAAGCTCTGTCGT
TGCGCCCAACTAGACCCCACAAGGGCTATATGGTGTTAGGAGGCGCTATT
TACATAGCGTAGCATTCCCTTGTAATAAATTAGTGTAGCGTTCTCTTGTA
TTGT

Coding sequence (CDS) from alignment at Sc0000018:1470760..1471663-

>transcript:BL81434_cuf0 ID=transcript:BL81434_cuf0|Name=transcript:BL81434_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=327bp|location=Sequence derived from alignment at Sc0000018:1470760..1471663- (Branchiostoma lanceolatum)
ATGAAGCCCACGTTCTTGAACGACTTCAACGGACGATCTTTCTTTTTGAA
TGATAAGTTCATTTCTAATTCGACTCTTCATCTCTTCATAGATGCGGCTG
CGTCCCTCGGTTATAATAATTATGTTTTTTATTCGTCAGAAATTACCTGC
AATGGCAGCCTTACTAGCGCTGAATTGATGCAGGTTTACAGGTTTCACAT
AATAGGTCATATTACACAACATATAGATATTTGCTTCACAGTTGCACTTT
GTGAAACTGTCGCAAGGGTCTGGGCGGCTGCCATTCGGCGCCACCAGGTG
ACCTCAATACGACCTTCCCCAACCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL81434gene:BL81434Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL81434_cuf0-E1BL81434_cuf0-E1-1564476830-137644Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL81434_cuf0transcript:BL81434_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000018genomeSc0000018:1470760..1471663 -
Properties
Property NameValue
Transcript idBL81434_cuf0
Biotypeprotein_coding