|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL81433_cuf1 >transcript:BL81433_cuf1-protein ID=transcript:BL81433_cuf1-protein|Name=transcript:BL81433_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=192bp
MNRPKASSFLVTAVVLILLASESAAFTRRRRGTCSAVNCQWGPWTSWSSC
TAQCGNSGTRTRTRAHSPAASCGGAPCSGSSSETEECNRFCPNGTPSGAG
CDCTGTGFTGTCCDIASCSDLYPNLRPARNFRQFRNQCFWSSSRRNPRLN
YTEARQECGSHGGAGTLAMIKDAETQRFLRNHLKRTSGKKQG Run BLAST on NCBI mRNA from alignment at Sc0000188:509019..513047+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL81433_cuf1 ID=transcript:BL81433_cuf1|Name=transcript:BL81433_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4029bp|location=Sequence derived from alignment at Sc0000188:509019..513047+ (Branchiostoma lanceolatum)
GGCTTCGCTCTGAGAAGGTCGTCTATAGACTCTCCACAGTAAGTTCCTTC
CTGTTAGGATTCTTGCACAAAAAGTATGCATATGCAGGTAGGTTTTTTAA
TGTTTTGTATGCTTACAATCAGCTGGACAAGTTTAAAAAGTCCTTTGTTC
GACGTTTGTTTGAACTAATCCGTGTATAGGTGGTTGGAACATAGATTTGT
ATGTCCTTTGAAGAATGCTTCGCCTGTGTTTGACCAGAGCGAATGTTGAC
ATGGGATGAAAGTTTCCAGGTATAATACCACCGCTGGTCTCGTTACATAT
GCGCTGGAGAGTTAGTATCATTTTCTGTGTGCCACCAACAACAAGTGGCT
GTTTTATCTTAGTCTCTAACAGACTAACCGCGCCGGCTATAGGGAGAATA
TTTGCCGGGGGACTATTCGCAGGCGCTATTTGACCCTCTCTCCGTAGCCG
ACTCCCTTCGAATTCATACAATTGAGTCTATTTGGCCAATTTCTACTATT
TTCCCAGCGACCCGATGAGACTGGTAGAGGCTAGTGATATCTAGCTATCT
CCCTAATAGTAGTCTCCTGTAAAGCGACCATTACTTAGACTAGCCTCGGG
CGGGCGAGCGGTCTGCATACCATATCCGATAATTGTCACGTTCTGTTTCT
GCTGCTGCTCAGCAGGCCTTGTGAGTACAAGGTCAAAGAAACAAGAGCTT
TTCAAAAAAGCTGGCGTTTCGGCTACGTTTATGAGTGTGAATTGTCTTTT
CCCTTTACTTGAAGTAAAATCTGCCAGAGAAAGTCACTCAAGGGCTGTTC
AGTCTATAAGAAAAATTGTCATTTTGGGAAATGAGTACTGTTTTAATAGA
GAAAGGCAGATTGGGGAAAGCAATTTTGAAGTTACGTCACTTAACTTAAG
TGCTTTTGAAAAAGCTGGTCTTGGCCTACAACTTGTACTTATTTGTAAAA
TGTATAATAGGCTCATTATAAAAGCTATCAATGTAATTATGTACATGGCA
CGCAATAAAACATAAAATTTGAAAAAGCACCATTGAATCATCAGCACTAT
GGTAATTAAGTGAAATAGAAGTTCATAACAGCTAAGGTTCTATCTAAAAT
GACTACCAAATGTCAAACAAATCAACAGCTACCTCATCCGTATTATTCTG
GTTTCCGCATTTACAACATTTCTTCCTTATTTTCCTGGGTAATTTTGCTA
AAATTCATGAAAATTCCCATAGTTTTGTGCCGAGGGGCGCCACTTTCCAC
GTCCGTGTTGTCTGAATGAAGTCGATACTGAACAATGGAGCATTTGCTAC
TGTAACAAAGAATCGCTGTTTTGCAAACAACATCAAGAGCCTCTGTTTAC
ATCGGGGATAGAAGTTTAGTGGCGAGTGTTTTGCAAGAATCATCTTACCG
CGCATAGGAGCCGCTGCACGGTATTTTCCATTACAATGAACAGAAAAATT
CGAATGCCGGGTTTGGAATCTATGAAGTCCTGTTCATAAGACAAAGGCCT
TGTATATATTAAATGAATATTTAAAAATAACAAATATAAAATATTTCTTT
ATTTATTAATGAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCACACACACACACACTCTCTCTCTCTCTCTCT
ATCTCTCTCTCTCGACAATGGACAATGATTGACGTTGTTGCAACAAGACT
TCTCAAAACACTAGACTAGTGTTGGCTTTGTTTATGACATTAGCTTAGAC
GGCTATACACGACTACAACTACAACTAAGGACCTTCAAAGATGAACCGTC
CCAAGGCTAGCTCCTTCCTCGTCACCGCGGTGGTGTTGATCCTTCTGGCG
AGTGAGTCCGCTGCGTTTACTAGACGCCGCCGCGGAACCTGCTCTGCGGT
CAACTGCCAGTGGGGCCCGTGGACATCTTGGTCTTCCTGTACAGCTCAGT
GTGGGAATTCAGGAACACGGACAAGGACAAGGTATGAACCATGCTTCTTG
ACAACCTGGGTGTCAGACATAGGGGCAAAGACGCGGTTCACGTGCAGTGT
TGTTAGCAATTTATATGCATTTACATTGAATATATATATATATCTATTTC
GGGCGACATTTCTGTGGAAGCTTCATATGGTAAAGAAATAAGGTTTTTAT
CTTCTTCTTCAGACTATGCTGACTTAATTATATATATATATGATAATCCG
GGGGTGCACTATTTTTCGTCCCTTTTAAAAAAAGTTTGCGACCATACTCT
ACATCCTACAAAAACTACTAAATGAGAAAACTGACAAATTGGATACTGAA
GCCATACAATAGCCCTTTTCCTATCGTGAAACGTACTGATTTTGTTGTAA
ACTTGCTCCTAGCACAAAATGTATTTCGAACCCTAAGTGAAGTCTTAAAA
AAAATGGAAGAACGAAAAAAAAACTTATTAATTGGTATACCACGTTCCGT
ATGTTCAGCCAATTCCTGGACCTTTCCGGAAAGTTAGATTTCATAATGAA
GCTAACTTTTTCTATGCCTTTACTCGTACTAGTATTTTTTTCGCATGCTC
GCATCAATTTTGAAGTTCCCAGAGGATGCCATCCATATAATCAAATCAGT
AAGGCATTCTTACAGATAAACAAGGTATTCTGGAAGGATTTTGCTGCTTG
TACCTCCATACTGTCAAAGAGCAAGATGCAGACATGTGGCAAATCGTTAT
CAGCGTTTCAGTTGACAGGCTCCAAGCATAGTCACTGATCTATGCTTCTT
TCACAACCCCCACCAGAGCCCACAGTCCTGCGGCATCATGTGGCGGAGCC
CCCTGTAGCGGCAGCAGCTCTGAGACGGAGGAGTGCAACAGGTTCTGTCC
GAACGGGACTCCCTCGGGGGCCGGCTGTGACTGCACAGGCACTGGCTTCA
CCGGGACGTGCTGCGACATCGGTACGTCAAAGAATACTAAACTAATAAGC
CCATTCATGGTTCCGACTACGCATGTGCAGTGTCAAAGGTGAAGACCCCT
GGCTTGTAAACAGTTCTCGTCTCGACATTGTCTAGATTTGAATAACAACG
CCCCGACGGGGTTTGTTTACGTCTCAGGGGCCTTTACCTTTGACACTGCA
CATGCGTAGTCGGAACCGTAAATTTTGACTGTGTACACTTCTAACGTCAT
GTGAGAAGGCCTATATTCAGCGCATCCCAGCTCATGTTTTCACGGGAAAT
AGGCTACTACGCACTGTGAGCGCGGCCCGACGTACGTCTGGCATGCGACC
CGACTTACAAAATCATTACTAAAAAATCCGTCACGTGTTAGGGCGCGTCA
TGAGTTAGGGCAGTCCCCGTTACATTCTAAAATAAGCTGCAAAATGAGCA
CATATACGGCGTAAATTACAGAAAATATATCGAAAAACGGATGCTAATTA
TCAATGTCGAAGAATGTTCTTTTCCTGTCGTGTTTTTATTGTCCTGTGTA
TCAGTACAACTAAGCTGAAAAATGTATTTCAAGCCCAGAACGAAGTTTTC
CAAATTCATCCTTCCCGGCCATTTACATTTCATAATGAAGGCAACTTTTT
TACGCCAACATTTTTCTCGCTTGTATCGTTTTGGGCGTTCAGAGAATATC
ATCCATATAATCATATCAGCATCGGCTAAGTATAGAAATGTATAAAGTAT
CACTCAAAACGACCATACATCACCTTTGTATTGTCCTATCTGCAGCATCG
TGCTCGGACCTGTACCCAAACCTTCGTCCTGCTAGAAACTTCAGGCAGTT
CCGGAACCAGTGCTTCTGGTCATCCTCCCGTAGGAACCCGCGGCTGAACT
ACACCGAAGCCCGGCAAGAGTGTGGGTCGCACGGAGGCGCAGGCACGCTA
GCGATGATCAAAGATGCTGAAACGCAAAGGTTTCTTAGAAACCATTTGAA
GAGAACCAGCGGGAAAAAACAAGGGTGAATTTTTTTTTTCTTTTCAACAG
ATATGGTATTACTTATTTTGGGGGAGAGT Coding sequence (CDS) from alignment at Sc0000188:509019..513047+ >transcript:BL81433_cuf1 ID=transcript:BL81433_cuf1|Name=transcript:BL81433_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1737bp|location=Sequence derived from alignment at Sc0000188:509019..513047+ (Branchiostoma lanceolatum)
ATGAACCGTCCCAAGGCTAGCTCCTTCCTCGTCACCGCGGTGGTGTTGAT
CCTTCTGGCGAGTGAGTCCGCTGCGTTTACTAGACGCCGCCGCGGAACCT
GCTCTGCGGTCAACTGCCAGTGGGGCCCGTGGACATCTTGGTCTTCCTGT
ACAGCTCAGTGTGGGAATTCAGGAACACGGACAAGGACAAGAGCCCACAG
TCCTGCGGCATCATGTGGCGGAGCCCCCTGTAGCGGCAGCAGCTCTGAGA
CGGAGGAGTGCAACAGGTTCTGTCCGAACGGGACTCCCTCGGGGGCCGGC
TGTGACTGCACAGGCACTGGCTTCACCGGGACGTGCTGCGACATCGCATC
GTGCTCGGACCTGTACCCAAACCTTCGTCCTGCTAGAAACTTCAGGCAGT
TCCGGAACCAGTGCTTCTGGTCATCCTCCCGTAGGAACCCGCGGCTGAAC
TACACCGAAGCCCGGCAAGAGTGTGGGTCGCACGGAGGCGCAGGCACGCT
AGCGATGATCAAAGATGCTGAAACGCAAAGGTTTCTTAGAAACCATTTGA
AGAGAACCAGCGGGAAAAAACAAGGGTGAATGAACCGTCCCAAGGCTAGC
TCCTTCCTCGTCACCGCGGTGGTGTTGATCCTTCTGGCGAGTGAGTCCGC
TGCGTTTACTAGACGCCGCCGCGGAACCTGCTCTGCGGTCAACTGCCAGT
GGGGCCCGTGGACATCTTGGTCTTCCTGTACAGCTCAGTGTGGGAATTCA
GGAACACGGACAAGGACAAGAGCCCACAGTCCTGCGGCATCATGTGGCGG
AGCCCCCTGTAGCGGCAGCAGCTCTGAGACGGAGGAGTGCAACAGGTTCT
GTCCGAACGGGACTCCCTCGGGGGCCGGCTGTGACTGCACAGGCACTGGC
TTCACCGGGACGTGCTGCGACATCGCATCGTGCTCGGACCTGTACCCAAA
CCTTCGTCCTGCTAGAAACTTCAGGCAGTTCCGGAACCAGTGCTTCTGGT
CATCCTCCCGTAGGAACCCGCGGCTGAACTACACCGAAGCCCGGCAAGAG
TGTGGGTCGCACGGAGGCGCAGGCACGCTAGCGATGATCAAAGATGCTGA
AACGCAAAGGTTTCTTAGAAACCATTTGAAGAGAACCAGCGGGAAAAAAC
AAGGGTGAATGAACCGTCCCAAGGCTAGCTCCTTCCTCGTCACCGCGGTG
GTGTTGATCCTTCTGGCGAGTGAGTCCGCTGCGTTTACTAGACGCCGCCG
CGGAACCTGCTCTGCGGTCAACTGCCAGTGGGGCCCGTGGACATCTTGGT
CTTCCTGTACAGCTCAGTGTGGGAATTCAGGAACACGGACAAGGACAAGA
GCCCACAGTCCTGCGGCATCATGTGGCGGAGCCCCCTGTAGCGGCAGCAG
CTCTGAGACGGAGGAGTGCAACAGGTTCTGTCCGAACGGGACTCCCTCGG
GGGCCGGCTGTGACTGCACAGGCACTGGCTTCACCGGGACGTGCTGCGAC
ATCGCATCGTGCTCGGACCTGTACCCAAACCTTCGTCCTGCTAGAAACTT
CAGGCAGTTCCGGAACCAGTGCTTCTGGTCATCCTCCCGTAGGAACCCGC
GGCTGAACTACACCGAAGCCCGGCAAGAGTGTGGGTCGCACGGAGGCGCA
GGCACGCTAGCGATGATCAAAGATGCTGAAACGCAAAGGTTTCTTAGAAA
CCATTTGAAGAGAACCAGCGGGAAAAAACAAGGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000188 | genome | Sc0000188:509019..513047 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL81433_cuf1 |
| Biotype | protein_coding |
|
