transcript:BL81209_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL81209_cuf0
Unique Nametranscript:BL81209_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL81209_cuf0

>transcript:BL81209_cuf0-protein ID=transcript:BL81209_cuf0-protein|Name=transcript:BL81209_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=133bp
NLKWDSHVTHMVKQSGKRLFILRRLKMFRVPELDLVTIYTCYVRPICEYA
VPVWNPGLTKNQSSRLETIQRRACRIILGKKYTHYSEALTQLGLPTLESR
REQLCKKFGLKLLKSAFRDWLPQSRGEASGRLT
Run BLAST on NCBI

mRNA from alignment at Sc0000356:12717..13118+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL81209_cuf0 ID=transcript:BL81209_cuf0|Name=transcript:BL81209_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=402bp|location=Sequence derived from alignment at Sc0000356:12717..13118+ (Branchiostoma lanceolatum)
TAACTTGAAGTGGGACAGTCATGTAACCCACATGGTTAAACAAAGCGGCA
AACGTCTATTCATCCTAAGAAGGTTGAAGATGTTCAGAGTTCCCGAACTT
GATCTAGTCACCATCTACACTTGCTACGTGCGCCCCATCTGTGAGTATGC
TGTCCCTGTTTGGAATCCCGGACTTACTAAAAACCAGTCATCCCGTCTAG
AGACCATTCAACGCCGTGCTTGCCGCATCATTCTGGGTAAGAAGTACACC
CACTACTCGGAAGCCCTCACTCAACTCGGACTACCCACCCTTGAATCCAG
GAGGGAACAACTATGCAAGAAGTTCGGACTGAAACTCCTGAAATCGGCTT
TCAGAGACTGGCTTCCCCAGTCCCGGGGTGAAGCCAGTGGTCGGCTAACG
CG

Coding sequence (CDS) from alignment at Sc0000356:12717..13118+

>transcript:BL81209_cuf0 ID=transcript:BL81209_cuf0|Name=transcript:BL81209_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=399bp|location=Sequence derived from alignment at Sc0000356:12717..13118+ (Branchiostoma lanceolatum)
AACTTGAAGTGGGACAGTCATGTAACCCACATGGTTAAACAAAGCGGCAA
ACGTCTATTCATCCTAAGAAGGTTGAAGATGTTCAGAGTTCCCGAACTTG
ATCTAGTCACCATCTACACTTGCTACGTGCGCCCCATCTGTGAGTATGCT
GTCCCTGTTTGGAATCCCGGACTTACTAAAAACCAGTCATCCCGTCTAGA
GACCATTCAACGCCGTGCTTGCCGCATCATTCTGGGTAAGAAGTACACCC
ACTACTCGGAAGCCCTCACTCAACTCGGACTACCCACCCTTGAATCCAGG
AGGGAACAACTATGCAAGAAGTTCGGACTGAAACTCCTGAAATCGGCTTT
CAGAGACTGGCTTCCCCAGTCCCGGGGTGAAGCCAGTGGTCGGCTAACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL81209gene:BL81209Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL81209_cuf0-E1BL81209_cuf0-E1-1564476830-446653Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL81209_cuf0transcript:BL81209_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000356genomeSc0000356:12717..13118 +
Properties
Property NameValue
Transcript idBL81209_cuf0
Biotypeprotein_coding