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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL81177_cuf0 >transcript:BL81177_cuf0-protein ID=transcript:BL81177_cuf0-protein|Name=transcript:BL81177_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=1480bp
ASLLEAMKATGRPLTPVETAAILNATRAKSGPLSPEETVTVLNASKTLGR
PLTPNENTAILQGIKDTGRALNAEEIAAVLNAAKTAGRTLAPEEVTAIVA
PQKLKESVVLREKKSPITEKRISQEVGQFLKRTSFAEMEDEPVVLEQAAT
EDNAAPPGVIEKAEVETTREVKPVSSADQAAVDALAKQIGKDLSDIEART
LATAIQTMERPLTAAETQKLIDSTNAVGRPLTPNEIVAIVDTAGVAGKPL
TPEETKALFEAAKQTGRKLSNEEAVVLLQSAKAAGRPLTPDDTETVIEAA
HQLGRVLTPDENAALLSAVQSKGRMLSPDEITAVLDAVKTAGRPLTPEEV
AAALDKAEMPLSPEDEAAVLESARAVGRPLSPDETSAVIEAAKAVGRPLT
SEETVAILEATETLGRPLTPEEGVAVLAATKAVGRPLSPKETSALLSAAQ
VAGRPLTPEEVAAVLAAQKVSSSPMTPEEIAAIFDAGKSAGRPLTSEETA
DILTAAKTVGRPLTENETASILTASEIASPLTPEDISAIVAASKLAGRPL
TADEILAVLDASKAAGRPLTADETAEAIATAQLGEMDVLSTEIQEAAGGI
PLSPKDSAVAQAANAVGRPLSSEETTAVLEVTGAVGRPLSSSESKDVINA
VKLGGGQLSPEEATSILEASKQSSPLSDTEIATILAATKEAGRPLEPHEV
AAILKASKEAGRPLTPEEISSVLKKARAARPLTPQEAVSVAEASRQAGRS
LTTEEAASIADAATAIGRPLSPDETAAILEATKSADRPLTPEEASSVMKG
ANTAGRPLSPAETAGFLKAASCVPREITSDEAKSIIDATNVAGKELTTDE
VKSVLAACDSAHRPLNEEEIDMVLEATRELGRPLTPEEADILLRSSKEAG
RPLTGPEAAAILAKAKGTKGPLSPNQITEALNEVAAQGAADVIGRPLTAD
ERTALEEANKVAGRPLSPEESAAVVEAAKTVGRPLSADEAAAILDAAQSA
GRPLTAEETAAILHASATAGKPLTPSEVAAVLEASKVAGRPLTGDEASAI
LEAAKAAGRPLTAEEASAVLDAIKSAGKPLSSDETSSVVNVAKALGRPLS
PKETEAILEATRAAGKPLTPQEATNILNAVAAVGRPLTPEETAALLKAAK
SVGRPLSPDEAASLLEAMKEAERPLSDDEVSSILEATATAGQPLTGDEMA
SVLRAARAAGRPLSPEEAKSILDAAKVAGRPLTPNETDAILQASKSADRS
LSPDEAATILEATKSSGRPLTSDESSTLLECVKAEGQSLSSDQATNVLNA
KNIAGQKLTPDETVSLLAASKEQEGELTPSAISGVLLASKEAGRPLTLAE
TAALSVAGAQEPVTPETIAKVLQPEVRQEPEITSDDVNKAEEAAERSLTP
EEVGAVSASAKSAGRDLTPDETNAVIEAAKVTNKPLTPNETVAVLGTVQT
VGRPLSPDEVVAIVVATQTTGRQLTPDEMA Run BLAST on NCBI mRNA from alignment at Sc0001612:15..4456+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL81177_cuf0 ID=transcript:BL81177_cuf0|Name=transcript:BL81177_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4442bp|location=Sequence derived from alignment at Sc0001612:15..4456+ (Branchiostoma lanceolatum)
CTGCTTCACTTCTTGAAGCCATGAAAGCAACAGGAAGGCCACTGACTCCT
GTAGAAACAGCTGCAATTCTTAATGCCACAAGGGCAAAATCAGGGCCCTT
GTCACCTGAGGAGACTGTTACTGTTCTGAATGCCTCAAAAACGCTTGGCA
GACCACTTACACCAAATGAGAATACAGCCATACTTCAAGGTATCAAAGAC
ACAGGAAGAGCACTCAATGCTGAAGAAATAGCTGCAGTGTTAAACGCTGC
TAAGACAGCTGGAAGGACACTGGCTCCCGAGGAAGTTACAGCAATCGTTG
CCCCGCAGAAACTCAAAGAAAGTGTTGTTCTGCGAGAGAAAAAGTCACCT
ATCACAGAAAAAAGGATCAGTCAAGAAGTAGGACAGTTCCTGAAGAGAAC
AAGTTTCGCTGAAATGGAGGATGAACCAGTCGTCTTAGAACAAGCTGCGA
CAGAGGACAATGCTGCACCTCCCGGTGTCATTGAAAAAGCTGAAGTAGAA
ACAACAAGAGAAGTAAAACCAGTCTCGTCAGCTGACCAAGCAGCTGTTGA
CGCCTTGGCGAAGCAAATTGGAAAGGATCTTTCAGATATTGAAGCCAGGA
CCCTGGCCACTGCCATTCAGACAATGGAAAGACCACTGACAGCAGCTGAA
ACACAAAAGCTGATTGATTCTACTAATGCAGTGGGTAGACCACTCACACC
CAATGAAATTGTTGCCATTGTTGACACAGCGGGTGTTGCTGGAAAACCTT
TAACTCCAGAAGAAACTAAAGCTCTCTTTGAAGCAGCCAAGCAGACTGGC
AGAAAATTGTCAAACGAGGAGGCTGTTGTGCTTCTGCAAAGTGCCAAGGC
AGCAGGAAGGCCTCTAACTCCTGATGATACTGAAACTGTTATTGAGGCAG
CCCACCAGCTTGGGAGGGTGTTAACCCCAGACGAGAATGCAGCTCTTCTT
AGTGCTGTACAATCGAAGGGAAGAATGCTCTCTCCTGACGAGATTACTGC
TGTCCTAGATGCTGTAAAAACTGCTGGAAGACCACTTACTCCAGAAGAAG
TGGCAGCTGCTCTAGACAAAGCAGAAATGCCACTTTCTCCTGAAGATGAA
GCAGCGGTCCTTGAGTCAGCTAGAGCCGTGGGCCGTCCCCTGTCACCAGA
CGAGACTTCTGCTGTCATCGAGGCAGCCAAAGCAGTTGGAAGACCGCTCA
CTTCAGAGGAGACAGTAGCTATTCTTGAGGCCACTGAAACACTAGGCAGA
CCATTGACACCAGAAGAAGGAGTAGCAGTTCTTGCCGCTACCAAGGCAGT
AGGACGACCTCTGTCTCCCAAGGAAACTTCTGCGCTGTTGAGCGCAGCAC
AAGTGGCAGGGAGGCCGCTGACACCTGAAGAGGTAGCAGCTGTCCTTGCA
GCCCAGAAAGTATCTTCAAGTCCAATGACACCAGAAGAAATAGCAGCAAT
ATTTGATGCAGGTAAGTCAGCAGGAAGGCCGCTAACAAGTGAAGAGACTG
CTGACATCTTAACAGCTGCCAAAACAGTAGGTCGGCCATTGACAGAGAAT
GAAACAGCATCAATTCTCACAGCTTCTGAAATAGCTTCACCATTAACACC
AGAAGATATATCTGCCATTGTTGCTGCCTCAAAACTGGCCGGCAGGCCGC
TAACAGCAGACGAGATTCTTGCTGTCCTCGATGCATCAAAGGCAGCCGGA
CGACCTTTGACAGCAGATGAAACTGCAGAGGCCATTGCAACTGCTCAGCT
TGGTGAAATGGATGTCTTATCAACTGAGATACAAGAGGCTGCAGGAGGAA
TACCACTGAGTCCAAAAGATTCTGCTGTTGCTCAAGCAGCTAATGCTGTT
GGAAGACCACTAAGTTCTGAGGAGACGACTGCTGTTCTTGAAGTCACTGG
AGCTGTAGGAAGACCGCTGAGCTCTTCTGAGTCGAAGGATGTCATAAATG
CTGTCAAACTAGGAGGAGGACAATTATCACCAGAAGAAGCTACATCTATT
CTTGAGGCCTCCAAACAATCTTCACCTTTGTCAGACACAGAAATTGCTAC
AATCCTCGCAGCTACTAAGGAAGCCGGTCGGCCCCTGGAACCTCATGAGG
TAGCAGCTATTCTTAAGGCAAGCAAAGAGGCTGGTCGACCACTTACACCA
GAAGAGATCTCTTCTGTTCTTAAGAAGGCAAGAGCTGCCAGACCTTTGAC
ACCACAAGAGGCTGTATCTGTAGCTGAAGCCTCCCGACAAGCTGGTCGCT
CCTTAACAACAGAGGAGGCAGCCAGCATTGCTGATGCAGCAACTGCAATA
GGGAGACCACTATCACCTGATGAAACTGCGGCTATTCTTGAAGCCACAAA
GTCAGCAGACAGACCACTGACACCTGAAGAAGCCTCTTCTGTTATGAAAG
GAGCAAATACAGCTGGCAGACCTCTAAGTCCGGCAGAGACTGCAGGATTT
TTGAAGGCAGCCTCCTGCGTTCCCAGGGAAATTACATCCGATGAGGCTAA
ATCCATTATTGATGCAACGAATGTAGCTGGAAAGGAATTAACAACTGATG
AGGTTAAGTCAGTGCTTGCTGCATGTGATTCAGCCCACAGGCCATTGAAT
GAAGAAGAAATAGATATGGTTCTGGAAGCCACAAGAGAACTCGGGAGACC
CTTAACACCTGAGGAGGCTGATATCTTGCTGCGTTCTTCCAAGGAGGCAG
GGCGGCCACTGACAGGTCCTGAGGCAGCTGCTATACTTGCCAAGGCAAAG
GGAACAAAGGGACCCCTCAGTCCAAACCAAATAACGGAAGCCCTAAATGA
GGTAGCTGCACAAGGAGCTGCAGATGTTATTGGCAGACCCTTGACAGCTG
ATGAGAGAACAGCTCTTGAAGAAGCCAATAAGGTGGCAGGAAGACCCCTT
TCTCCAGAGGAATCAGCTGCTGTTGTAGAAGCTGCAAAAACAGTTGGACG
TCCACTGTCGGCAGATGAAGCAGCAGCTATATTGGATGCAGCACAGAGTG
CTGGAAGGCCTTTGACTGCGGAAGAGACTGCAGCTATTCTGCATGCATCT
GCAACAGCTGGAAAACCATTAACACCAAGTGAAGTAGCTGCAGTCCTTGA
AGCAAGTAAAGTTGCGGGAAGACCATTGACAGGAGATGAGGCATCGGCCA
TCCTTGAAGCTGCAAAGGCAGCAGGAAGACCTCTCACTGCAGAGGAAGCT
TCAGCTGTTTTAGATGCTATCAAGTCAGCCGGAAAACCCTTGAGTTCTGA
TGAAACATCATCCGTGGTCAACGTAGCAAAAGCATTGGGTAGACCACTGA
GCCCCAAGGAAACTGAAGCTATCCTGGAGGCAACAAGGGCAGCAGGAAAA
CCACTAACTCCTCAGGAAGCCACAAACATCCTGAATGCTGTGGCAGCAGT
GGGGAGACCACTGACTCCAGAAGAAACTGCAGCTCTGTTGAAAGCAGCAA
AAAGTGTTGGAAGGCCACTATCACCAGATGAGGCTGCAAGTCTGTTAGAA
GCCATGAAAGAAGCCGAGAGACCACTCTCAGACGATGAAGTGTCTTCTAT
TTTGGAGGCTACTGCAACTGCAGGACAACCACTAACAGGTGATGAAATGG
CATCAGTTCTTAGAGCAGCTAGGGCTGCTGGAAGGCCTTTGTCGCCAGAG
GAAGCCAAATCTATTCTGGATGCAGCTAAAGTGGCTGGACGCCCTCTTAC
ACCCAATGAAACCGATGCAATACTTCAAGCCTCAAAGTCGGCTGATAGGT
CTCTGAGTCCAGATGAAGCAGCAACAATTCTGGAAGCTACCAAATCATCT
GGACGGCCCCTCACCTCTGATGAATCATCAACGCTACTAGAGTGTGTTAA
AGCCGAAGGTCAGAGTCTATCCAGTGACCAAGCCACCAATGTCCTGAATG
CTAAAAACATAGCAGGACAGAAGCTAACACCAGATGAGACTGTGTCTTTG
CTGGCAGCTTCCAAAGAACAGGAGGGTGAACTTACACCATCTGCAATCAG
TGGAGTTCTGTTGGCTTCCAAAGAAGCAGGACGACCGCTGACACTTGCAG
AGACAGCAGCACTCTCTGTAGCAGGGGCACAAGAACCTGTAACCCCAGAG
ACCATTGCCAAGGTTCTTCAGCCAGAGGTAAGACAGGAGCCTGAAATAAC
ATCAGATGATGTGAACAAAGCAGAGGAAGCTGCAGAAAGGTCCCTCACTC
CCGAAGAGGTTGGAGCCGTCAGTGCGTCAGCTAAGTCAGCGGGAAGGGAT
TTGACTCCCGATGAAACTAATGCAGTCATTGAAGCAGCCAAGGTCACAAA
CAAGCCATTGACACCAAATGAAACAGTTGCTGTGCTTGGAACTGTCCAGA
CAGTTGGCAGGCCACTTAGTCCAGATGAAGTTGTCGCAATTGTTGTCGCC
ACACAAACAACAGGCAGACAACTGACTCCTGATGAGATGGCT Coding sequence (CDS) from alignment at Sc0001612:15..4456+ >transcript:BL81177_cuf0 ID=transcript:BL81177_cuf0|Name=transcript:BL81177_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4440bp|location=Sequence derived from alignment at Sc0001612:15..4456+ (Branchiostoma lanceolatum)
GCTTCACTTCTTGAAGCCATGAAAGCAACAGGAAGGCCACTGACTCCTGT
AGAAACAGCTGCAATTCTTAATGCCACAAGGGCAAAATCAGGGCCCTTGT
CACCTGAGGAGACTGTTACTGTTCTGAATGCCTCAAAAACGCTTGGCAGA
CCACTTACACCAAATGAGAATACAGCCATACTTCAAGGTATCAAAGACAC
AGGAAGAGCACTCAATGCTGAAGAAATAGCTGCAGTGTTAAACGCTGCTA
AGACAGCTGGAAGGACACTGGCTCCCGAGGAAGTTACAGCAATCGTTGCC
CCGCAGAAACTCAAAGAAAGTGTTGTTCTGCGAGAGAAAAAGTCACCTAT
CACAGAAAAAAGGATCAGTCAAGAAGTAGGACAGTTCCTGAAGAGAACAA
GTTTCGCTGAAATGGAGGATGAACCAGTCGTCTTAGAACAAGCTGCGACA
GAGGACAATGCTGCACCTCCCGGTGTCATTGAAAAAGCTGAAGTAGAAAC
AACAAGAGAAGTAAAACCAGTCTCGTCAGCTGACCAAGCAGCTGTTGACG
CCTTGGCGAAGCAAATTGGAAAGGATCTTTCAGATATTGAAGCCAGGACC
CTGGCCACTGCCATTCAGACAATGGAAAGACCACTGACAGCAGCTGAAAC
ACAAAAGCTGATTGATTCTACTAATGCAGTGGGTAGACCACTCACACCCA
ATGAAATTGTTGCCATTGTTGACACAGCGGGTGTTGCTGGAAAACCTTTA
ACTCCAGAAGAAACTAAAGCTCTCTTTGAAGCAGCCAAGCAGACTGGCAG
AAAATTGTCAAACGAGGAGGCTGTTGTGCTTCTGCAAAGTGCCAAGGCAG
CAGGAAGGCCTCTAACTCCTGATGATACTGAAACTGTTATTGAGGCAGCC
CACCAGCTTGGGAGGGTGTTAACCCCAGACGAGAATGCAGCTCTTCTTAG
TGCTGTACAATCGAAGGGAAGAATGCTCTCTCCTGACGAGATTACTGCTG
TCCTAGATGCTGTAAAAACTGCTGGAAGACCACTTACTCCAGAAGAAGTG
GCAGCTGCTCTAGACAAAGCAGAAATGCCACTTTCTCCTGAAGATGAAGC
AGCGGTCCTTGAGTCAGCTAGAGCCGTGGGCCGTCCCCTGTCACCAGACG
AGACTTCTGCTGTCATCGAGGCAGCCAAAGCAGTTGGAAGACCGCTCACT
TCAGAGGAGACAGTAGCTATTCTTGAGGCCACTGAAACACTAGGCAGACC
ATTGACACCAGAAGAAGGAGTAGCAGTTCTTGCCGCTACCAAGGCAGTAG
GACGACCTCTGTCTCCCAAGGAAACTTCTGCGCTGTTGAGCGCAGCACAA
GTGGCAGGGAGGCCGCTGACACCTGAAGAGGTAGCAGCTGTCCTTGCAGC
CCAGAAAGTATCTTCAAGTCCAATGACACCAGAAGAAATAGCAGCAATAT
TTGATGCAGGTAAGTCAGCAGGAAGGCCGCTAACAAGTGAAGAGACTGCT
GACATCTTAACAGCTGCCAAAACAGTAGGTCGGCCATTGACAGAGAATGA
AACAGCATCAATTCTCACAGCTTCTGAAATAGCTTCACCATTAACACCAG
AAGATATATCTGCCATTGTTGCTGCCTCAAAACTGGCCGGCAGGCCGCTA
ACAGCAGACGAGATTCTTGCTGTCCTCGATGCATCAAAGGCAGCCGGACG
ACCTTTGACAGCAGATGAAACTGCAGAGGCCATTGCAACTGCTCAGCTTG
GTGAAATGGATGTCTTATCAACTGAGATACAAGAGGCTGCAGGAGGAATA
CCACTGAGTCCAAAAGATTCTGCTGTTGCTCAAGCAGCTAATGCTGTTGG
AAGACCACTAAGTTCTGAGGAGACGACTGCTGTTCTTGAAGTCACTGGAG
CTGTAGGAAGACCGCTGAGCTCTTCTGAGTCGAAGGATGTCATAAATGCT
GTCAAACTAGGAGGAGGACAATTATCACCAGAAGAAGCTACATCTATTCT
TGAGGCCTCCAAACAATCTTCACCTTTGTCAGACACAGAAATTGCTACAA
TCCTCGCAGCTACTAAGGAAGCCGGTCGGCCCCTGGAACCTCATGAGGTA
GCAGCTATTCTTAAGGCAAGCAAAGAGGCTGGTCGACCACTTACACCAGA
AGAGATCTCTTCTGTTCTTAAGAAGGCAAGAGCTGCCAGACCTTTGACAC
CACAAGAGGCTGTATCTGTAGCTGAAGCCTCCCGACAAGCTGGTCGCTCC
TTAACAACAGAGGAGGCAGCCAGCATTGCTGATGCAGCAACTGCAATAGG
GAGACCACTATCACCTGATGAAACTGCGGCTATTCTTGAAGCCACAAAGT
CAGCAGACAGACCACTGACACCTGAAGAAGCCTCTTCTGTTATGAAAGGA
GCAAATACAGCTGGCAGACCTCTAAGTCCGGCAGAGACTGCAGGATTTTT
GAAGGCAGCCTCCTGCGTTCCCAGGGAAATTACATCCGATGAGGCTAAAT
CCATTATTGATGCAACGAATGTAGCTGGAAAGGAATTAACAACTGATGAG
GTTAAGTCAGTGCTTGCTGCATGTGATTCAGCCCACAGGCCATTGAATGA
AGAAGAAATAGATATGGTTCTGGAAGCCACAAGAGAACTCGGGAGACCCT
TAACACCTGAGGAGGCTGATATCTTGCTGCGTTCTTCCAAGGAGGCAGGG
CGGCCACTGACAGGTCCTGAGGCAGCTGCTATACTTGCCAAGGCAAAGGG
AACAAAGGGACCCCTCAGTCCAAACCAAATAACGGAAGCCCTAAATGAGG
TAGCTGCACAAGGAGCTGCAGATGTTATTGGCAGACCCTTGACAGCTGAT
GAGAGAACAGCTCTTGAAGAAGCCAATAAGGTGGCAGGAAGACCCCTTTC
TCCAGAGGAATCAGCTGCTGTTGTAGAAGCTGCAAAAACAGTTGGACGTC
CACTGTCGGCAGATGAAGCAGCAGCTATATTGGATGCAGCACAGAGTGCT
GGAAGGCCTTTGACTGCGGAAGAGACTGCAGCTATTCTGCATGCATCTGC
AACAGCTGGAAAACCATTAACACCAAGTGAAGTAGCTGCAGTCCTTGAAG
CAAGTAAAGTTGCGGGAAGACCATTGACAGGAGATGAGGCATCGGCCATC
CTTGAAGCTGCAAAGGCAGCAGGAAGACCTCTCACTGCAGAGGAAGCTTC
AGCTGTTTTAGATGCTATCAAGTCAGCCGGAAAACCCTTGAGTTCTGATG
AAACATCATCCGTGGTCAACGTAGCAAAAGCATTGGGTAGACCACTGAGC
CCCAAGGAAACTGAAGCTATCCTGGAGGCAACAAGGGCAGCAGGAAAACC
ACTAACTCCTCAGGAAGCCACAAACATCCTGAATGCTGTGGCAGCAGTGG
GGAGACCACTGACTCCAGAAGAAACTGCAGCTCTGTTGAAAGCAGCAAAA
AGTGTTGGAAGGCCACTATCACCAGATGAGGCTGCAAGTCTGTTAGAAGC
CATGAAAGAAGCCGAGAGACCACTCTCAGACGATGAAGTGTCTTCTATTT
TGGAGGCTACTGCAACTGCAGGACAACCACTAACAGGTGATGAAATGGCA
TCAGTTCTTAGAGCAGCTAGGGCTGCTGGAAGGCCTTTGTCGCCAGAGGA
AGCCAAATCTATTCTGGATGCAGCTAAAGTGGCTGGACGCCCTCTTACAC
CCAATGAAACCGATGCAATACTTCAAGCCTCAAAGTCGGCTGATAGGTCT
CTGAGTCCAGATGAAGCAGCAACAATTCTGGAAGCTACCAAATCATCTGG
ACGGCCCCTCACCTCTGATGAATCATCAACGCTACTAGAGTGTGTTAAAG
CCGAAGGTCAGAGTCTATCCAGTGACCAAGCCACCAATGTCCTGAATGCT
AAAAACATAGCAGGACAGAAGCTAACACCAGATGAGACTGTGTCTTTGCT
GGCAGCTTCCAAAGAACAGGAGGGTGAACTTACACCATCTGCAATCAGTG
GAGTTCTGTTGGCTTCCAAAGAAGCAGGACGACCGCTGACACTTGCAGAG
ACAGCAGCACTCTCTGTAGCAGGGGCACAAGAACCTGTAACCCCAGAGAC
CATTGCCAAGGTTCTTCAGCCAGAGGTAAGACAGGAGCCTGAAATAACAT
CAGATGATGTGAACAAAGCAGAGGAAGCTGCAGAAAGGTCCCTCACTCCC
GAAGAGGTTGGAGCCGTCAGTGCGTCAGCTAAGTCAGCGGGAAGGGATTT
GACTCCCGATGAAACTAATGCAGTCATTGAAGCAGCCAAGGTCACAAACA
AGCCATTGACACCAAATGAAACAGTTGCTGTGCTTGGAACTGTCCAGACA
GTTGGCAGGCCACTTAGTCCAGATGAAGTTGTCGCAATTGTTGTCGCCAC
ACAAACAACAGGCAGACAACTGACTCCTGATGAGATGGCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0001612 | genome | Sc0001612:15..4456 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL81177_cuf0 |
| Biotype | protein_coding |
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