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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL81175_cuf2 >transcript:BL81175_cuf2-protein ID=transcript:BL81175_cuf2-protein|Name=transcript:BL81175_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=154bp
MFRIKDPRVSLDFYTRVLGMRLLKKLDFPSMKFSLFFMGFEKAEDIPSDP
ADCTAWTFSRKATLELTHNWGTENDPEQSYHNGNKPPQGFGHIGLAVPDV
YKACERFKELKVPFVKEPDAGKMKGLAFIQDPDGYWIEILSPKPMVTIAS
TDWS Run BLAST on NCBI mRNA from alignment at Sc0000173:23441..27086+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL81175_cuf2 ID=transcript:BL81175_cuf2|Name=transcript:BL81175_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3646bp|location=Sequence derived from alignment at Sc0000173:23441..27086+ (Branchiostoma lanceolatum)
CAGCCGTCCGCCGCCGCTGAGAAACATGTCCGAGGCTAAGAACGAGGAGG
CGAAAGGGCTGACAGATTCGGAGGCCCGAGAAGCCTGTGGCGAGCCAGAT
GCCTCAACCAAGGTAGTCTTTCAGGAAATATGATTTGGATAACGACATGG
TATCTAAACTGCATATAGACTTGTAATAACTTCTTCGAATTCTAACTGTG
TTATAACTCTTCATTATTGACAGGGGGCGTGGCACACGACCATAAACTTT
GTTGAATGCCTTAAGTCAATATAGCAACGTTGTCACCATTTACATGTACT
ACCATTGCAAGTGCTTTGAGTTTATCTCCAAGCAGATCCTACAGTGGCAG
GGGACAGTATTGGCCAAACAGTATCCATTGGCCCCCGTAGGGGATACTGC
GTGGCCAGTGGATACTGCCCCCTGCCACCGTAGGATCTGCATGGAGATTA
GCTTTGAGTAGTTGTTTGTTGATCTTGCTGCCAAAGGTTGTTCTTTAATT
TGCATTTTTGTTGTTGTTGTCAGGACTTCATCTTCCAGCAGACAATGTTC
AGGATAAAGGACCCAAGGGTGTCCCTGGATTTCTATACAAGGGTGCTGGG
AATGAGGTGAGTTGACATACATGTAGACAAGGTAGGACAACCATTAGAAA
TATGATATCACAGGAAGTGCTACTTTTCTAGTTGCGTGTACCGCAAATTT
GGGTCAATGAGACAGCTGTCACCATGTTCATCAGAAAGTAGCAGACACCC
TGTGGTGTTCGATTACATTATGTAGCAAGTGGCAGGACAAAGCTTGAGCT
GGTCACCATATATATGAATGTGTTTGAGTAAGAATATAAACAGAGTAGTC
TGTATAACTATAACACAAACTCCAGCCGCCCGGGGATTTCTGTCCAATGG
AGGCTTGATTGAATTCAGGCTATAAACAGAGCACTAGTGGCTATACCATG
TAAAGGTAAACATTATATATTTGCTTGCAAATATTACATTTCTAGTTGCA
AGTTACTATTTCAGATGTAACAGGTCACTGTTAATGTTCCAGGTTGCTGA
AGAAGTTGGATTTCCCCAGTATGAAGTTCTCCCTGTTCTTCATGGGGTTT
GAGAAGGCTGAGGACATCCCCTCAGACCCTGCTGACTGCACAGCATGGAC
CTTCTCAAGGAAGGCTACCTTGGAACTGACTCAGTAAGTTTTGTACGAAC
ATTACCAGTAGCTGCATGTTTGAACCTTCACTTGATTATGATTAAAGCAG
GGCTGTCTCAAGCATAATTTTTTTTCTCTGTCCCACTCATTGTTTTGGAA
CGCATGGTGTTAAATCTGTCCAGGAAATCTACCATGGAACTAACTGAGTA
AGTTTTGTACAAACGTTACCAGTAGCTGCATGTTTGAACCTTCACTTATC
AATAAAGCATATTTCTTTTCTTCATCTCACTCAATGTTTTGGAACCCATG
TTTTTAAATCTGTCATTTTAAGCTTATGAAAACACATGTTGATTTATATC
ATGTACGTTGTTGTGATATCCAAGTGGCACAAGAATTATTCCTGAACACT
AATGTGTATACACTTTTTCTTCATATTTCCAATTAGCAACTGGGGGACTG
AGAACGACCCTGAACAGAGCTACCACAATGGAAACAAACCTCCTCAAGGA
TTTGGTAGGCACTCGTTAATAAGAACTACATGTACCTGGAAATGGGCCCC
TAGTGGCTTGCTATGGTACTGCAGCAGAACTTCTGGGTTTGATATCTCAT
GCCTTCCCTCCCTTCCCCATCTCTCACTTGCTCTGCTTTTCGACAAAGTT
CTTTGTACACAACCAAATGTTTTATTCTACTATTTCTAGTCAATGTTTCA
GTGACCGGCTGTCACCTTCCTTCTTCGGGCAGTTCTGACTGGTTCTATTT
GGTACTGCAGCTAGGTGTCACTGCTAACAGATGCGGCCCCAAAAAGAAAG
TATTAATACATGAAACTTCAGCTTGAATAAAACCCTCGGTTGTGTACAAA
GAATCTATTGACTTACCAACCTGATGAAACTAGTCACGGAACAACTGCAA
TTGTATACAAACTTGTCAAACTCTGTCAGCACTTCCAAGAAAATCTTCCT
AACTTTGTGCCTTGTTACTGTCCTGGCTACCATTGTTTTGGGAAAGACCT
ATTGTAGCAGATAGAAACCAAACAAGGATGGTATTGAGGTTTTCAGATTT
TAAAGGTTGAGTTGAAACCTACATGTAGTTGTGTACTAGTACTAGCTTCC
TTATGAAAATAAGTATTTTTAAAAAGGTTCATCTATCAGTTTATTATCTC
CAGAGTTATGTTATACTGTATTATCATATTAAGACAACAGTATAGCTAAA
TGAACTGTTGCTTTACTTTTCAGGTCACATTGGACTGGCCGTGCCTGATG
TGTACAAAGCCTGTGAAAGGTTCAAGGAGCTGAAGGTGCCTTTTGTGAAG
GAGCCTGATGCTGGTTAGTGCTGAAATGTTACGTGGTTGGACTATTGATA
TGATTACATTTATTTTCCCATCTGTTTTCTTCTATNATCTATGTTTTCTT
CTATATTGACTTCCATTTTCTATATTGACTTCCATATCCCCATCGCCTGC
AGGTAAGATGAAAGGACTGGCCTTCATTCAGGACCCTGACGGATACTGGA
TTGAGATTCTCAGCCCTAAGCCAATGGTGACTATTGCAAGCACTGACTGG
AGCTAAAGATCAAATTTGAACTAATCACAAACCTTGTTGAAACCTGATTG
TGATGACCTGATCCAAGTCGTGTGATGATTGGTCAGGATGACTAGCTAAT
CTTCACTCTGATCATGATGATTGTCAAAGAATCATTTTGAACCACTTTCA
AAATGTAATTTAATATTACCTTTGCCAAAGTTGCTTTAGGAGTGTTACAA
CGGTATGACTGAAATTGTTACGTTCCTCCCAAACCCTAGGCGGCCATCGG
CAAGTAGCATGCTGCTTCTTGCATGACCATGGACATTGAAGTGTGGAAGT
CCACCAAGAGGTTGTGTTCAAAACTTCAATCGCTCATGCTTCTCATTATG
CTAGTAACATGGAAAATTACTGCACTGTATGAAAAGTGTTGTCTAGACTA
GTATTGTACAACAAGCACTGTAAAGTTTTTGAGTATGAGGTCACCGAATA
AAGTACATGCACCTACATGTAAGATTAGCAAGATTTGAATAGCATTACAT
TTTGTAGGTTTATACAGCATATTCTATGCGTGAATATATTGATGGCAGAC
AGGTGCTACATCATGTAGTGCCCAGTTTGGTCTTCCTGTACAGGTAATGC
TCAGTGAAAACATGTCCATAGATGAAAAGACTAAATCATAAGAAAATCTA
ATTTATCTAATGATAGCCTGAAAATCTAATGATAGTCTGCATGACAGCTT
TCTTGATTCATCTGTATGTGTACTTGCACAAGAAGCACTTTGCTACATAC
AGCAAAATCAAAAAATTAAAGTTTTGTTGCAAAGTACCTTACAAGTGTAT
CAATGTTCTTTTCTCCAAGCAGAGTTTTCAGTTGGGGTTGTTAGGAGTGG
CCATGATTTCGAAGTGAGAGGCAGACGATAAAAACGCTGCCACTCAAATT
TAAAGCCCCCCAAACAAAACCTCTGCTTGGATTATACCAATCTTCG Coding sequence (CDS) from alignment at Sc0000173:23441..27086+ >transcript:BL81175_cuf2 ID=transcript:BL81175_cuf2|Name=transcript:BL81175_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2325bp|location=Sequence derived from alignment at Sc0000173:23441..27086+ (Branchiostoma lanceolatum)
ATGTTCAGGATAAAGGACCCAAGGGTGTCCCTGGATTTCTATACAAGGGT
GCTGGGAATGAGGTTGCTGAAGAAGTTGGATTTCCCCAGTATGAAGTTCT
CCCTGTTCTTCATGGGGTTTGAGAAGGCTGAGGACATCCCCTCAGACCCT
GCTGACTGCACAGCATGGACCTTCTCAAGGAAGGCTACCTTGGAACTGAC
TCACAACTGGGGGACTGAGAACGACCCTGAACAGAGCTACCACAATGGAA
ACAAACCTCCTCAAGGATTTGGTCACATTGGACTGGCCGTGCCTGATGTG
TACAAAGCCTGTGAAAGGTTCAAGGAGCTGAAGGTGCCTTTTGTGAAGGA
GCCTGATGCTGGTAAGATGAAAGGACTGGCCTTCATTCAGGACCCTGACG
GATACTGGATTGAGATTCTCAGCCCTAAGCCAATGGTGACTATTGCAAGC
ACTGACTGGAGCTAAATGTTCAGGATAAAGGACCCAAGGGTGTCCCTGGA
TTTCTATACAAGGGTGCTGGGAATGAGGTTGCTGAAGAAGTTGGATTTCC
CCAGTATGAAGTTCTCCCTGTTCTTCATGGGGTTTGAGAAGGCTGAGGAC
ATCCCCTCAGACCCTGCTGACTGCACAGCATGGACCTTCTCAAGGAAGGC
TACCTTGGAACTGACTCACAACTGGGGGACTGAGAACGACCCTGAACAGA
GCTACCACAATGGAAACAAACCTCCTCAAGGATTTGGTCACATTGGACTG
GCCGTGCCTGATGTGTACAAAGCCTGTGAAAGGTTCAAGGAGCTGAAGGT
GCCTTTTGTGAAGGAGCCTGATGCTGGTAAGATGAAAGGACTGGCCTTCA
TTCAGGACCCTGACGGATACTGGATTGAGATTCTCAGCCCTAAGCCAATG
GTGACTATTGCAAGCACTGACTGGAGCTAAATGTTCAGGATAAAGGACCC
AAGGGTGTCCCTGGATTTCTATACAAGGGTGCTGGGAATGAGGTTGCTGA
AGAAGTTGGATTTCCCCAGTATGAAGTTCTCCCTGTTCTTCATGGGGTTT
GAGAAGGCTGAGGACATCCCCTCAGACCCTGCTGACTGCACAGCATGGAC
CTTCTCAAGGAAGGCTACCTTGGAACTGACTCACAACTGGGGGACTGAGA
ACGACCCTGAACAGAGCTACCACAATGGAAACAAACCTCCTCAAGGATTT
GGTCACATTGGACTGGCCGTGCCTGATGTGTACAAAGCCTGTGAAAGGTT
CAAGGAGCTGAAGGTGCCTTTTGTGAAGGAGCCTGATGCTGGTAAGATGA
AAGGACTGGCCTTCATTCAGGACCCTGACGGATACTGGATTGAGATTCTC
AGCCCTAAGCCAATGGTGACTATTGCAAGCACTGACTGGAGCTAAATGTT
CAGGATAAAGGACCCAAGGGTGTCCCTGGATTTCTATACAAGGGTGCTGG
GAATGAGGTTGCTGAAGAAGTTGGATTTCCCCAGTATGAAGTTCTCCCTG
TTCTTCATGGGGTTTGAGAAGGCTGAGGACATCCCCTCAGACCCTGCTGA
CTGCACAGCATGGACCTTCTCAAGGAAGGCTACCTTGGAACTGACTCACA
ACTGGGGGACTGAGAACGACCCTGAACAGAGCTACCACAATGGAAACAAA
CCTCCTCAAGGATTTGGTCACATTGGACTGGCCGTGCCTGATGTGTACAA
AGCCTGTGAAAGGTTCAAGGAGCTGAAGGTGCCTTTTGTGAAGGAGCCTG
ATGCTGGTAAGATGAAAGGACTGGCCTTCATTCAGGACCCTGACGGATAC
TGGATTGAGATTCTCAGCCCTAAGCCAATGGTGACTATTGCAAGCACTGA
CTGGAGCTAAATGTTCAGGATAAAGGACCCAAGGGTGTCCCTGGATTTCT
ATACAAGGGTGCTGGGAATGAGGTTGCTGAAGAAGTTGGATTTCCCCAGT
ATGAAGTTCTCCCTGTTCTTCATGGGGTTTGAGAAGGCTGAGGACATCCC
CTCAGACCCTGCTGACTGCACAGCATGGACCTTCTCAAGGAAGGCTACCT
TGGAACTGACTCACAACTGGGGGACTGAGAACGACCCTGAACAGAGCTAC
CACAATGGAAACAAACCTCCTCAAGGATTTGGTCACATTGGACTGGCCGT
GCCTGATGTGTACAAAGCCTGTGAAAGGTTCAAGGAGCTGAAGGTGCCTT
TTGTGAAGGAGCCTGATGCTGGTAAGATGAAAGGACTGGCCTTCATTCAG
GACCCTGACGGATACTGGATTGAGATTCTCAGCCCTAAGCCAATGGTGAC
TATTGCAAGCACTGACTGGAGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000173 | genome | Sc0000173:23441..27086 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL81175_cuf2 |
| Biotype | protein_coding |
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