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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL80947_cuf1 >transcript:BL80947_cuf1-protein ID=transcript:BL80947_cuf1-protein|Name=transcript:BL80947_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=257bp
MTSLLYTVLIIPACLVVSIYGQGSGTGQGPYSGQGKHSGQGKQSEEAPEQ
GQCVRCCPQDNPPGPQIIALPQQMTSEKGDKGERGFPGRTGKMGPKGHKG
VAGPPGPKGIAGPPGPQEKLQASAFSVARSKPMEGTKYYQVVMYDKVLVN
TGDHFNLFTGKFYCVIPGIYYFSATVHTYNSRTTYLHLMKNNEPQVILFA
QEGDRSIMQSQTVMLQLIVGDQVWMRMDYGDHLAIFGGEDDAYITFSGHL
VFPTYNM Run BLAST on NCBI mRNA from alignment at Sc0000012:2692969..2700349+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL80947_cuf1 ID=transcript:BL80947_cuf1|Name=transcript:BL80947_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=7381bp|location=Sequence derived from alignment at Sc0000012:2692969..2700349+ (Branchiostoma lanceolatum)
CTTTACTAACAGAGCACATGAAGCCTGCAGACCCCCATACACAGCCTAAT
GAGATGCTCCAGCCAGACAAGTTCAGCTGGTAGGCGGGCTGGGTAACAGG
AACCACATGTGGGCTGCAGGCAGATCTAAATAGGGGCCCCCAGTCTCTCT
CAGCCAGACTGGTGTGGGGTCATCTGGAAACTAGTACAGTACTACGTGGC
ATGCTCTGCTGGCATGCACTCCTAGCAACTTTCTATCCCTCCTGGATCTA
AAAGATTGGGCGAGTACATAGTTTTCCAAGAACCCCTGTGTAGTTCTGTA
TCCTTGGACATGCCAAGCTGATGAACTATCTCTTCTGAAAAAGGTATGCT
TAGATTCTTCTACCACTTCACTTGGACCTTAGTACTTGGCCTTGTGCTGG
CTTTCATTCACATTCATAAATATTGAGAGTGAAAAAAAAGGCTGTTCAGC
AACTTCACCCTTGCTTGGTGTGTGCTTTAACTAATTCTTTGCTTGACTTC
TATGTAGTTCGACAGGCTATGAGTGACTTGCTTGCCCAAGTGTGCACATA
GATATCTCAAGTCCAGGTTAACTTTCCACTAGAATCAGCACAAAAACAAC
TGGTAGCAAGGAGGTTTAATCCTCCTACACATGTAGCTGGTAGGTAAAGC
CAGCAGGCTAGCCTGCTTTTGACTCTGAGAGTTACTGTTAACAGTTATGT
ATCAGTTTTCATCCAGAGCCTGTTTCTTGTCACATTTCATCCCATCTTGT
TTCCCTTATGCTATCTGTCTTTTACTGAAGTGAAGATACGAGGTCATGAC
CTTTTCACCAGGAGAGTACAGTAGGTTGATTAATATCCAACCATTAACTT
TAATGTTACATCTAGTCCTAGCTTACTTTAAGATCCCTTCTGTGTACTGA
TTGAAGCCTTATTGTGGCTAAGTTTCACATGTAAACCTTACAGGGGCCCC
AAACATTCCAGAGCCCTGCATGGTCACTCCACAACAATCAGGGCAGTTCA
CAAAGACTTGGGCAGCATCCTTCTCTTGGGACTAAACTACATAACTACGA
AATTGGCCCAAATAGGCTAACAAAAAAGAACTCTTGGGGAACTGGACCTC
CTCTGACTAGCTAATTGCGGTTAGTTATCCAGCTTATGTTGGCCAATTTC
TAGTATTTATTCAGCCTGGGCAAACCTCCTTGGCCTCAGAGAGAGGTCTG
CTAAAGCCCCCTCCTGCTAGGGTTCAGCTAAAGAATAGGCTGGTCCTTCG
TACTTATTGTTTCCTCTGTTGTGCCAAATAATAGAAACCTTTATCACAGA
AGTTTATATCAACAGAAGTGTACCTCTACTAGGCTCTAGGCATAAGCATG
CAGATATCCACCATCACCTCAGACACAAATTATATCCCAGATTTGAAAAT
AACTCCATATCAACTCTCAAGTACATGATTCAGACCAGCCGACGTGAAGT
CAACAAGCAGATTTCTGGGCTGATGGTCATTGCAAATTTTCTTCCTGTTT
GCTTGCTGACAATTAGGGCCTCTTTACACCTACGACATTTTAGAGTCGTG
CGATCATCGTCGTGGGCGACGTCGCCGGCGACGGTATTTTTTGGCCGTCT
AAAGACGATCAAAACAATCGTACGACGGCAATAAACGGGAAATCCTCGAA
ATGTCGTGCGACCACCTCGGACCCAGTCGCACGACGTTCAGCGGGGGGGC
CTGTGGCTGTGTTTTTCTCGTCTAAAGAAGAATCGTCGCCGGCGACGGAA
GTGGGTGATATGCTAATAAGCCTACAGCGTGCTGTTTCCTGTCCGGGAAG
GAAAGTTTCTATCGTTTTCTTTGTAAATATGCATGCAGTTAGCAATGGAA
ACATATTTTTCTCGTCCGAAACCGGTTACTAGTATTCCGGCGCGACGCCC
TGCTACCAGTGGCTACTTCTCTAGTATGCCCCTATTCCTCGATCCCCGGG
ACATCCCCGGCGGCGGACACGAACTCGGGTTAAATCCCGTCCGTCTCTGT
ACCAGCCTCAATCTCTTTCTTTGTTGAGCACCGTTCTCAACGTCTCAACT
GCAGGGCAACAGTTGTTGCAAAGTCAGTAAAAGCTTCATCTTTTGACGAA
AACAAGCGGTTCCCCCGCCATTTTGAATTTGAGCGCAAGAGTTCACTTTG
AGTCACACGCGCACATCAATGGAATTCTGCGCCGCGGGGGTCCCATGATA
TTTCCTGACCGTGTGTCTAAAGAAAACCGTCGCCTACGACGATGATCGTA
CGACCTTATAACATTGTAGGTCTAAAGTGCGCCTTAGTTAACTGTTGATG
GGCCCAGGTAATTGATAGTCAGGGGCACTGAACCAGGTCATCCTCCAACC
CTGGGGAGTCCCAAGGGAGAGGAAGTGGGGCATTTCTCCCATGGCAATGG
GCAGCCAAATTTCAGTTTAGGTCAGCTGTCATGTGTGATGACTAACAAGG
CACAGTCTTCTGAATGAAAAGTAGTGATGTGAGATACTAGCCTGAGTACC
ATCCTCCATAGTAACCGCTGGCTCAATCTTGTTGCTTGCTAACCTTGGTT
AGAAAGCGAAAAGATGCAAGTGAAAAGATTGAGCATGTACTAAGTTACTA
TGGAGGAGGGTACCCATGCTACTCTCCAAGCAAAGGAGTGGATCCGGCAG
GTTTTTGACGTGTTTTTAGGCGTTTTTGTCGGGCTTTCTACTTTGTCATT
TTTTTTCTCTAGCCAACGTTGGCTAGACACAAAAAAAATTACAATGTAGA
AAGCCCGACAAAAACGCCTAAAAACACGTCAAAAACCTGCCGGACCCACT
CCTTTGCTTGGAGAGTAACCCATGCTAGTTAGATTATAACTCCATAAAGT
ATTACCTTATTATACAATGACATAAATTTGTCTTGACCAAACACAAAAGT
ATGTGTTCTTATACATTTTGTATCTGTTACATTCTACAGCCACCACCAGC
TCCAGTCCGACCATGACGTCCCTCCTCTACACTGTCCTGATCATACCAGC
CTGCCTGGTGGTCAGCATCTATGGCCAGGGGTCAGGCACTGGCCAGGGGC
CATATTCTGGCCAGGGGAAACATTCTGGCCAAGGGAAACAGTCCGAGGAG
GCACCTGAGCAAGGCCAGTGTGTGCGGTGCTGCCCACAAGATAACCCACC
AGGGCCTCAGATCATCGCTCTGCCTCAGCAGATGACATCAGAGAAGGGAG
ATAAAGGTGGGTACCAGGGTCTTATCTGATGATAGTCTTCAGCCAAGTAG
AAATCAAGGTCTTTTAGCAATGCCATTGGCCCATCAACCCAGTGCAGCAC
CAAGTGCAGGGAGGCACTGCATGATGGTAGTTTATCAGCCTCCTCCATCC
AAATGAGTAGGTCTTGCTGCATCAGTGGTAGGGGAGCTGCAAAGCTCTTT
CCCCTCCACTCTTTGATGATGTAAACAGAATTTTTTCTTGGTCAGAAATG
TCCTCTTTTTAATAATATACTAACCTACTATGAATAATGTACATCTAAGC
TGTACCTATTAAAGTGATGGGGAAGTGGTGGACACTTTTGGATCCTTTAC
CATTTTGCCACCCCAAATCAGAATGTTGACTCATGACTTGAGTTTGCCTG
GGGAAAGGGAACCAGGGTTGCCAACTTATTCAAATTTGACCTCAAACCAT
CCTGGTCCTCTTCCTCCAGGGAAGAGTAAACAAGTTCAGCATCAGAGACA
TATCTGTTTCTCCAGACTGGTGTTTTGTGCACATCTAAAAAACCTGGCAA
CCCTGTTTCCCCCCAGGTGACCCCGGCTGGCCTGGTCCTGTGGGTGTGAG
GGGGCCAAATGGGACCCACGGTCCCCCTGGACTGGACGGAGGCAGAGGAC
CAAGAGGACCGCCTGCCCCGAACGCCACCAGACCTCAGGCCGCCTTCTCT
GTGTTACGGGCATCTCCCATGTTTGGGGGTGACAGATTCCAAGCTATCAC
CTTTGAACACCAGTTTGTGAACATAGACCAGCACTTCAACAACGACACGG
GCGTGTTTTACTGCATGATCTCCGGCATCTACCATTTCTCTTACACTCTG
CACACGTACAATGGCTACGAATCGTATGTGCACCTCATGAAGAATGAGGA
GGAGCAAGTGATTAACTTTAGTCAGTCTAGCGGCCGCAGCATCATGCAGA
CACAGTTTGCACTTCTGCCACTGGACAAAGGAGACCGTATCTGGCTACGA
CTAGCTGCCAGGAATTCAACCGCCATCTTCAGTGACAGCAAAGACTTTTA
CATCACCTTTAATGGGTACCTGGCAGTGCCTCAGGNACCTGGCAGTACCT
CAGGACTATGAACTCAGTAATGTCATACCACAGAAGACAGAACCGAACAA
AGCCAATGTACTTGATTGAGAACTATATGGATACCAACGCTACAGTACTA
CCACATACATTGCAATTTGTACTTTTATAAATGTAACGTTACAGCTGTAA
TAACAGGACAATGACAAATCATTGTGTTGACCGTGGCAAATTTCGTAGTT
TTGTGAAATGGACCTAAGATATTTTTCTAAGATTCCAAATGTCTTAATTC
AGCCTCAAGAAAGGTGAATTACCAGAGAACCAGAAGACTCAGAGTCACAT
ATAGCATGCTTGCTGTTTAGAAATACGAAATTATGTGTTGATCTTATTGG
TATGGAATAAACACTGAATTGAAAATTTGAACATGTATGAATGTGAAATG
ATGATTTCATGCATCAAAATCATTTGTAAAAGTTAAATCAACCAGATTAG
AACTTCAGCACAGTAATTACAAAATCCCTTTATGTTTGGCCAAGGAAAAC
GTTGGTGACATAAATCACTTATTGTGTGCTATGGGTTAATGTGAGTCAGT
CTAAAGTACACACTAAGTCTAAAGTATACACTAAGTGTTGATTAAAGTGA
GACTCATATACTGTAAAACCACCATGATTTTAAACGTCAAAACTTAAAGA
TTTGAAACCGACTGAATCTTCACCAAACAATGTGCTAAGAGCTGGATTGG
TATTTTCCGATTTATGTAAATGATTCAAGTTCTTGTTGTGCTTGGGAGTG
ACAAGGCATTGAATGCAATTTACATGCCAAGTGCTACTACATGGTATTCT
CCAAGCAGAGATTTCGATCGAGTGGGGTAGTAGTGGCCAGGGTTTTTTAC
GGGGTTTTTCAGACGTAAAAAACCTCGGCCACTACTACCCCACTTGACCG
AAACCTCTGCTTGGAGAATTACTACATGGGTGCATAGCTGCTGTGCTGTG
CCAAGCACTGTTATATATACCAGTTGATATGTACAAATAAGGCCACACCA
TTTTAATTTCTTGGTTAACAGAATTTTAAAAAAAATGCTAGATTGAAAAA
TCAACAGGAAAACAAAATCTCAGAGGAAAGTCTGTACTTTAGTGCACACA
GTTTCAGGGTGTGAACAGAGTCAGGTGCAAGTTTTCACCCCAGCCTTCTG
TTTTCATGATCTTTTTTGTGCTAAAATTAAAAAAAAAATCTGTTAACCAA
GAAATTAAATTGGTGTCGCCTAACAGACCATAACCTTGGACAAAGGAACA
ACCAGGGCCATGATCTTGACTGACACACACTGTGATTGGTGATAGGTGCC
CGTACCAAGTAGACGTCTGAATACCAGATGTGTGCTATTACCAATCCTTG
ACCTGGTACTTGGCTTCTTAAAACATGCAGAGTTTTTGGATGGTTCCATT
TACCACTGATGGAAGCAAGGCATTTACTTGAAGGTTACCTGCCACCCTTC
TTTAACTGACTGTCATGAAACCCTGGGAGAAATTAACTGATTACCCATGA
ATAAGGTTGGATCTATACACAGTAAAAAGTAAAGTTTAAGGTTAAGAACC
ATGAAGAATTCTATTCAATCTACAGACTCTTTTGTTCACAAACCCTTCTA
TGGACAGTTACACAATTAAAGTCTCACTTCCTAACTAAGATCTAAATTGG
AATCTTAGAAAGGCACATGATAAGCCTTAAGGAAAGCCCAGGCTTGTTTC
AAGTTGCTAAATCCTCAGTGGGCAGCAGCCCAACAGTGTGTAGCAGACCA
GCAAATTATTATCATATCAAACTTCTGTGACTTGATCATGAGCATTTAGG
CCACAGATGGAGACAGAGTTTGAGCCAGACGTATCTGCTTCCTTCCTATG
GTATCTTAGACAACCACTAATGAACTTTAAGGCCCGGCCATTCTGACAGT
TGGAATTTATCTAGGTAAGATTTGTAATGCGATAAGTATTTGTCTGGTGA
ACTTTGTTTCTCCCTACTTATACCATACAGGCCGGAGGCAACTGCCTGAA
ATCTATGACAGAAACTGTAATGGTACAACATTTTCCATCCAAAGTGCTTG
TCAGGGAATTTAATTATCAAGACTAGTGACATATGGTATATCTTAAGCAG
GTATTTCAGACTAACTCACTAGTAGTATAATATATTCACCTTAAATATTC
ACTTTGAAAGGAAAAACTTTCTTTCTTTCAATACAGTGCAAAAAGAAAGA
TGTTGAGACCATGAATGATATACACCTAAAGCTAAGTCCGCTACTGCTCG
CACAACAGCAATGTAAGGTACATATGTACATAACTCACTCACAACATTTG
TCTTTGCAGGAGAGCGTGGGTTCCCTGGTAGAACAGGCAAGATGGGACCA
AAAGGACACAAGGGTGTGGCAGGCCCCCCTGGCCCCAAGGGAATAGCCGG
CCCTCCTGGTCCACAAGAGAAACTCCAGGCATCGGCCTTCTCTGTGGCGC
GCAGTAAACCCATGGAGGGGACAAAGTATTACCAGGTGGTCATGTACGAC
AAAGTGTTGGTCAACACTGGAGACCACTTCAACCTGTTCACAGGGAAGTT
CTACTGCGTCATCCCCGGCATCTACTACTTCTCCGCCACGGTCCACACCT
ACAACAGCCGGACAACCTACCTACATCTGATGAAGAACAACGAACCACAG
GTCATCCTGTTTGCCCAGGAGGGCGACCGCAGCATCATGCAGTCCCAGAC
GGTCATGTTGCAGCTGATCGTTGGGGACCAGGTGTGGATGAGGATGGACT
ATGGAGACCATCTCGCCATATTTGGTGGCGAGGATGATGCCTACATCACC
TTCAGTGGACATTTAGTTTTTCCCACGTACAACATGTGATCTATATTAGA
CATATATTGTAAGAATGAATATCCTAAAACGTTTTTATACAAAGACTTTT
TACCTCTTACACATGTCAGCCACGTGATAGATTCCTGTTGTGACTTCAAA
TCTAATCTGAGACTTAGAAACTCTCCAAAAGGAATGGGCAGTATGACGTT
CGTGGGCCAAAAATGTAGGCACAGGCCTCTTACAGACCATTGATGTTCTC
AGTGTTCATATCGTATTTCACAGAGCGAGAC Coding sequence (CDS) from alignment at Sc0000012:2692969..2700349+ >transcript:BL80947_cuf1 ID=transcript:BL80947_cuf1|Name=transcript:BL80947_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1548bp|location=Sequence derived from alignment at Sc0000012:2692969..2700349+ (Branchiostoma lanceolatum)
ATGACGTCCCTCCTCTACACTGTCCTGATCATACCAGCCTGCCTGGTGGT
CAGCATCTATGGCCAGGGGTCAGGCACTGGCCAGGGGCCATATTCTGGCC
AGGGGAAACATTCTGGCCAAGGGAAACAGTCCGAGGAGGCACCTGAGCAA
GGCCAGTGTGTGCGGTGCTGCCCACAAGATAACCCACCAGGGCCTCAGAT
CATCGCTCTGCCTCAGCAGATGACATCAGAGAAGGGAGATAAAGGAGAGC
GTGGGTTCCCTGGTAGAACAGGCAAGATGGGACCAAAAGGACACAAGGGT
GTGGCAGGCCCCCCTGGCCCCAAGGGAATAGCCGGCCCTCCTGGTCCACA
AGAGAAACTCCAGGCATCGGCCTTCTCTGTGGCGCGCAGTAAACCCATGG
AGGGGACAAAGTATTACCAGGTGGTCATGTACGACAAAGTGTTGGTCAAC
ACTGGAGACCACTTCAACCTGTTCACAGGGAAGTTCTACTGCGTCATCCC
CGGCATCTACTACTTCTCCGCCACGGTCCACACCTACAACAGCCGGACAA
CCTACCTACATCTGATGAAGAACAACGAACCACAGGTCATCCTGTTTGCC
CAGGAGGGCGACCGCAGCATCATGCAGTCCCAGACGGTCATGTTGCAGCT
GATCGTTGGGGACCAGGTGTGGATGAGGATGGACTATGGAGACCATCTCG
CCATATTTGGTGGCGAGGATGATGCCTACATCACCTTCAGTGGACATTTA
GTTTTTCCCACGTACAACATGTGAATGACGTCCCTCCTCTACACTGTCCT
GATCATACCAGCCTGCCTGGTGGTCAGCATCTATGGCCAGGGGTCAGGCA
CTGGCCAGGGGCCATATTCTGGCCAGGGGAAACATTCTGGCCAAGGGAAA
CAGTCCGAGGAGGCACCTGAGCAAGGCCAGTGTGTGCGGTGCTGCCCACA
AGATAACCCACCAGGGCCTCAGATCATCGCTCTGCCTCAGCAGATGACAT
CAGAGAAGGGAGATAAAGGAGAGCGTGGGTTCCCTGGTAGAACAGGCAAG
ATGGGACCAAAAGGACACAAGGGTGTGGCAGGCCCCCCTGGCCCCAAGGG
AATAGCCGGCCCTCCTGGTCCACAAGAGAAACTCCAGGCATCGGCCTTCT
CTGTGGCGCGCAGTAAACCCATGGAGGGGACAAAGTATTACCAGGTGGTC
ATGTACGACAAAGTGTTGGTCAACACTGGAGACCACTTCAACCTGTTCAC
AGGGAAGTTCTACTGCGTCATCCCCGGCATCTACTACTTCTCCGCCACGG
TCCACACCTACAACAGCCGGACAACCTACCTACATCTGATGAAGAACAAC
GAACCACAGGTCATCCTGTTTGCCCAGGAGGGCGACCGCAGCATCATGCA
GTCCCAGACGGTCATGTTGCAGCTGATCGTTGGGGACCAGGTGTGGATGA
GGATGGACTATGGAGACCATCTCGCCATATTTGGTGGCGAGGATGATGCC
TACATCACCTTCAGTGGACATTTAGTTTTTCCCACGTACAACATGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000012 | genome | Sc0000012:2692969..2700349 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL80947_cuf1 |
| Biotype | protein_coding |
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