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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL80844_cuf0 >transcript:BL80844_cuf0-protein ID=transcript:BL80844_cuf0-protein|Name=transcript:BL80844_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=283bp
MSFTFGFQITEEDGEEGDSSCQNTGELHGTQECPPPPLPAKEISMSFSEV
QQPATTSQLRLEGGEVLSYITSPESKSLEASTSESDLIPSVYEGGMKIWE
CSVDLVQYLSEIALSWAGLMVLELGCGAGLPGILALTKGAERIHFQDYNE
EVLQNVTIPNVVLNTGAGLDAARCRFFGGDWGGVQELLTEESESTNNKYD
VILTSETIYNTDSYQKLHDLMKSVLAPHGTVYLAAKTHYFGVGGGTRLFE
EFLQKEGVFQSEVCKVYSEGVNREILKIEMKKS Run BLAST on NCBI mRNA from alignment at Sc0000215:283307..284402- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL80844_cuf0 ID=transcript:BL80844_cuf0|Name=transcript:BL80844_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1096bp|location=Sequence derived from alignment at Sc0000215:283307..284402- (Branchiostoma lanceolatum)
AACTGAGGTTTTTCACAGGATAGAAATCACGTAAGAACCAGAATGTCCTT
CACATTCGGCTTCCAGATAACCGAAGAAGACGGAGAGGAAGGAGATAGTA
GCTGTCAAAACACAGGAGAACTTCATGGTACCCAAGAGTGCCCCCCTCCC
CCTTTACCTGCAAAGGAGATCTCCATGTCCTTTTCTGAAGTGCAACAACC
TGCAACCACCAGTCAGCTCAGACTGGAAGGGGGAGAAGTATTATCCTACA
TAACCTCTCCTGAAAGCAAGAGCCTAGAAGCAAGTACGTCAGAGTCCGAC
CTCATCCCTAGTGTGTACGAAGGCGGGATGAAAATCTGGGAGTGTTCTGT
GGACCTCGTGCAGTACCTCAGCGAGATCGCGCTCTCCTGGGCTGGCCTGA
TGGTGCTGGAGTTAGGCTGTGGTGCCGGCTTACCCGGGATCCTCGCGCTC
ACCAAAGGAGCGGAACGTATTCATTTCCAAGACTACAACGAGGAAGTGCT
ACAAAATGTGACGATTCCCAACGTTGTACTCAATACGGGAGCAGGTCTTG
ATGCAGCCAGATGCAGATTTTTTGGAGGGGACTGGGGCGGGGTTCAAGAA
CTTTTGACGGAGGAATCAGAGTCTACGAACAATAAGTATGATGTCATCCT
AACATCCGAGACAATCTACAATACTGACTCCTATCAGAAGCTGCATGACT
TGATGAAGAGTGTACTCGCCCCACATGGCACAGTTTACCTGGCGGCGAAA
ACACACTACTTTGGCGTGGGAGGGGGGACCAGGTTATTTGAAGAATTCCT
CCAAAAGGAAGGCGTCTTCCAAAGTGAAGTCTGCAAGGTTTACTCAGAAG
GAGTCAACAGAGAAATTCTCAAGATTGAAATGAAGAAGTCTTGAAGGATT
GATCAGTACATTTCAAGAAAATGAACAATTTTGTAATTTCAGTACTTAAG
TACTTCAACAAAATGAATATATTTGATATACTTACTTTTGTGGGTTTTAA
AAATCCCACTATACTATTATAGACTGATAGGTTTTGTTTGTCTTAGATTG
AGAAAACATGTTCTCAAACATGTTTTTGGTGATATATTGTACATGT Coding sequence (CDS) from alignment at Sc0000215:283307..284402- >transcript:BL80844_cuf0 ID=transcript:BL80844_cuf0|Name=transcript:BL80844_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=852bp|location=Sequence derived from alignment at Sc0000215:283307..284402- (Branchiostoma lanceolatum)
ATGTCCTTCACATTCGGCTTCCAGATAACCGAAGAAGACGGAGAGGAAGG
AGATAGTAGCTGTCAAAACACAGGAGAACTTCATGGTACCCAAGAGTGCC
CCCCTCCCCCTTTACCTGCAAAGGAGATCTCCATGTCCTTTTCTGAAGTG
CAACAACCTGCAACCACCAGTCAGCTCAGACTGGAAGGGGGAGAAGTATT
ATCCTACATAACCTCTCCTGAAAGCAAGAGCCTAGAAGCAAGTACGTCAG
AGTCCGACCTCATCCCTAGTGTGTACGAAGGCGGGATGAAAATCTGGGAG
TGTTCTGTGGACCTCGTGCAGTACCTCAGCGAGATCGCGCTCTCCTGGGC
TGGCCTGATGGTGCTGGAGTTAGGCTGTGGTGCCGGCTTACCCGGGATCC
TCGCGCTCACCAAAGGAGCGGAACGTATTCATTTCCAAGACTACAACGAG
GAAGTGCTACAAAATGTGACGATTCCCAACGTTGTACTCAATACGGGAGC
AGGTCTTGATGCAGCCAGATGCAGATTTTTTGGAGGGGACTGGGGCGGGG
TTCAAGAACTTTTGACGGAGGAATCAGAGTCTACGAACAATAAGTATGAT
GTCATCCTAACATCCGAGACAATCTACAATACTGACTCCTATCAGAAGCT
GCATGACTTGATGAAGAGTGTACTCGCCCCACATGGCACAGTTTACCTGG
CGGCGAAAACACACTACTTTGGCGTGGGAGGGGGGACCAGGTTATTTGAA
GAATTCCTCCAAAAGGAAGGCGTCTTCCAAAGTGAAGTCTGCAAGGTTTA
CTCAGAAGGAGTCAACAGAGAAATTCTCAAGATTGAAATGAAGAAGTCTT
GA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000215 | genome | Sc0000215:283307..284402 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL80844_cuf0 |
| Biotype | protein_coding |
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