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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL80827_cuf0 >transcript:BL80827_cuf0-protein ID=transcript:BL80827_cuf0-protein|Name=transcript:BL80827_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=170bp
MHMFSTCREIMGEAYVVRRLEDDSDSDEETRRKTTNGNSTNKRPTDLLAE
TPTEPQPKKLKTWEKSVGSLAKKSSLSSLVKAKKPAKQGQSSTNEQARKE
TPASSEIPLTPKPSQEKKTSSEVERENSSKDERNEGSRIEGVHSSMATVQ
SSGLGLLGTYSDSSDSESSN Run BLAST on NCBI mRNA from alignment at xfSc0004699:89..1600+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL80827_cuf0 ID=transcript:BL80827_cuf0|Name=transcript:BL80827_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1512bp|location=Sequence derived from alignment at xfSc0004699:89..1600+ (Branchiostoma lanceolatum)
TATTATTTAGTTCTTCTGAAGATATGTATCATGTGTCAATGTTATACCAA
TTAGTACGTCTTGATTACTAATTCTATGCACATGTTTTCCACTTGCAGGG
AGATTATGGGTGAGGCTTACGTAGTGAGGAGGCTAGAGGATGACTCTGAC
AGCGATGAAGAGACCAGGAGAAAAACAACAAACGGCAACAGCACCAACAA
GAGACCAACAGACCTGCTGGCAGAGGTTAGTCAAGAAGAATATTGTCAGA
CTTTTCTTAAACTGTTACTGAATTAAGTTGGTCTGCTCTCTGCTATCCCT
AACACTGTCTCTAGTGGCAAATTCTGTCTCATTGAAATAAACAAAATGCC
AAACCTCTTCAAATATGAATTGCAATAACTTGGCCACTGCTAGTAGATTT
TATGGATGACTATTGATTTTTACCTGATTTTGAGAGAAAAAAAGCAAACA
TTTCATTTCCTTCTGGAAAATGATAAGATTTGTCACATGGTAGCCTTCAG
TGTAGTTGTAGAAGTTACGTCACTAGTGTGGTAGCCTTAAGTGTAGTTGT
AGTGATACTAGACTATCACACTCGTGTCACTTTTTGCACTTCTTAAATGC
AGGAATAAAAGACTTGATGGCAGTGATAAGATTTGTTGCTTCAATTCTTG
TTTTAACTTTCATGATCATTCTCTATTTTGGAAATCTAGGCATCTTGTTT
TTTTTCCCATCATGAATTTTTCTTTAGCACTTGTGCATTAGATTTTGAGG
CTGTAGAGGATATCATCCATAGTTTTTACTTCCTGTGGCCCAAGTTGAAA
TTGAAAGGATTTTGGAAGTGATTGTTGTGTTTTTGTGTCATTGCTTGTAC
TCTATAGCATACCACACAATGGGTTTACACTCAGTGTTATGATGATGAGA
TTAATTCATATCTTTAAAAAAACTTTTTTTTTTCAGACACCAACTGAGCC
ACAACCTAAGAAATTAAAAACATGGGAGAAAAGTGTTGGTTCCCTGGCCA
AGAAGTCATCCCTCTCCTCATTGGTCAAGGCCAAGAAACCAGCCAAGCAA
GGGCAATCCTCAACCAATGAACAGGCCCGTAAGGAAACCCCAGCCTCATC
AGAGATACCACTTACCCCAAAACCTTCACAGGAGAAAAAGACAAGTTCAG
AGGTTGAGAGAGAAAATTCCAGCAAAGATGAAAGGAATGAAGGAAGCAGA
ATTGAAGGAGTGCATAGTAGTATGGCCACTGTTCAGTCCAGTGGGTTGGG
TCTTCTTGGCACCTACTCAGATAGTAGTGACTCCGAATCTAGCAACTAGT
TCTGTATCAACACTTATCTATGAAGCTTTATGCCAATGTTATACATGTAC
CAATAGACCGATCCTGACTGTCCATCACAATTAGCAGTTCAGTCAATGAC
AGGATAGCAGTTAGCGATTTAACCAATGAGAGACTGGCTTCATGTCTGTC
AAATGTTTTTAATGTTTTTATGTTGCATTTCTATGAAATCAGTCTATAGC
TCTAGATTTAAC Coding sequence (CDS) from alignment at xfSc0004699:89..1600+ >transcript:BL80827_cuf0 ID=transcript:BL80827_cuf0|Name=transcript:BL80827_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1026bp|location=Sequence derived from alignment at xfSc0004699:89..1600+ (Branchiostoma lanceolatum)
ATGCACATGTTTTCCACTTGCAGGGAGATTATGGGTGAGGCTTACGTAGT
GAGGAGGCTAGAGGATGACTCTGACAGCGATGAAGAGACCAGGAGAAAAA
CAACAAACGGCAACAGCACCAACAAGAGACCAACAGACCTGCTGGCAGAG
ACACCAACTGAGCCACAACCTAAGAAATTAAAAACATGGGAGAAAAGTGT
TGGTTCCCTGGCCAAGAAGTCATCCCTCTCCTCATTGGTCAAGGCCAAGA
AACCAGCCAAGCAAGGGCAATCCTCAACCAATGAACAGGCCCGTAAGGAA
ACCCCAGCCTCATCAGAGATACCACTTACCCCAAAACCTTCACAGGAGAA
AAAGACAAGTTCAGAGGTTGAGAGAGAAAATTCCAGCAAAGATGAAAGGA
ATGAAGGAAGCAGAATTGAAGGAGTGCATAGTAGTATGGCCACTGTTCAG
TCCAGTGGGTTGGGTCTTCTTGGCACCTACTCAGATAGTAGTGACTCCGA
ATCTAGCAACTAGATGCACATGTTTTCCACTTGCAGGGAGATTATGGGTG
AGGCTTACGTAGTGAGGAGGCTAGAGGATGACTCTGACAGCGATGAAGAG
ACCAGGAGAAAAACAACAAACGGCAACAGCACCAACAAGAGACCAACAGA
CCTGCTGGCAGAGACACCAACTGAGCCACAACCTAAGAAATTAAAAACAT
GGGAGAAAAGTGTTGGTTCCCTGGCCAAGAAGTCATCCCTCTCCTCATTG
GTCAAGGCCAAGAAACCAGCCAAGCAAGGGCAATCCTCAACCAATGAACA
GGCCCGTAAGGAAACCCCAGCCTCATCAGAGATACCACTTACCCCAAAAC
CTTCACAGGAGAAAAAGACAAGTTCAGAGGTTGAGAGAGAAAATTCCAGC
AAAGATGAAAGGAATGAAGGAAGCAGAATTGAAGGAGTGCATAGTAGTAT
GGCCACTGTTCAGTCCAGTGGGTTGGGTCTTCTTGGCACCTACTCAGATA
GTAGTGACTCCGAATCTAGCAACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xfSc0004699 | genome | xfSc0004699:89..1600 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL80827_cuf0 |
| Biotype | protein_coding |
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