|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL80820_cuf0 >transcript:BL80820_cuf0-protein ID=transcript:BL80820_cuf0-protein|Name=transcript:BL80820_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=603bp
AEATYIREVLTDVEGGNTRRFFKYTKAVLGQASTGVPALKMGTNILDTPR
GKATALNDYFVQQTDLPGKDDSSPVFVPPVSPGTFLETLQVTVDDVRQQL
LSLKVGKSCGPDDITPNLLRRVADPISGPLTKLFNMSLSLGQVPSRWKEA
NVTPIHKGGSRHAPNNYRPISLLNIIPKVLENIVNKRLMEHIRPMLTQYQ
SGFRAQDNTTLQLVRLVDEWTKAIDKGEVVGCVFLDLRKAFDKVWYNGLL
AKLEGYGIRGRVLEWFQSYLTERRQRVVVNGATSDWKTPLAGVPQGSVLG
PTLFILYINDLPSRCTTCVANLFADDTSLTAAHRSINTVVDSLNKDLATV
SDWLQSWKLEANGDKCKVMFLTTRPLPQRIPPVILAGTILQVVYSHKHLG
VTLTCKLTWSLHVEATTNKARRTAGMLCALRKKVPKNILLQLYKIMIRPV
LEYADIVWSGLTARDARSVESVQYRSARMISGHRGIPYPSYRTVYSQLCL
PSLTFRCKFHTVTTLFKLMNGHCPPHLLSLLPTTRSSSIDSRYPLRNGNN
LSVQTPKSVRTQKAFFHRATKLWNLLPPETRTATSVSSFRGKAWASLGDP
FLV Run BLAST on NCBI mRNA from alignment at Sc0000175:480194..482322+ Legend: CDSpolypeptideexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL80820_cuf0 ID=transcript:BL80820_cuf0|Name=transcript:BL80820_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2129bp|location=Sequence derived from alignment at Sc0000175:480194..482322+ (Branchiostoma lanceolatum)
GCTGAAGCTACTTATATCAGGGAAGTCCTGACTGACGTAGAGGGTGGAAA
CACAAGACGTTTCTTTAAGTACACCAAGGCCGTACTAGGACAAGCTTCAA
CGGGCGTACCAGCACTTAAAATGGGGACTAACATCCTTGACACTCCCAGA
GGGAAGGCCACAGCACTAAACGACTACTTCGTGCAGCAGACCGACTTACC
CGGCAAAGATGACTCCTCCCCTGTTTTCGTTCCACCCGTCTCTCCTGGGA
CTTTCCTTGAAACACTTCAAGTAACAGTGGACGATGTCCGTCAGCAACTC
CTCAGCCTCAAGGTCGGAAAGTCTTGCGGCCCAGATGACATTACACCGAA
CCTCTTACGGCGAGTGGCCGACCCCATCTCAGGACCATTAACAAAACTGT
TCAATATGTCGCTTTCCCTCGGACAAGTGCCCTCCAGATGGAAGGAAGCA
AACGTGACCCCAATCCACAAAGGAGGTAGCCGCCATGCTCCCAACAACTA
TAGGCCAATATCCCTCCTGAACATCATTCCCAAAGTTTTGGAAAATATTG
TAAACAAACGCCTAATGGAACACATTCGTCCAATGCTGACACAGTATCAA
AGTGGATTTCGAGCGCAGGACAACACAACTCTTCAACTGGTCCGACTTGT
TGACGAGTGGACCAAAGCCATTGACAAAGGAGAGGTGGTTGGCTGCGTAT
TCTTGGACCTGCGAAAGGCTTTTGATAAAGTCTGGTACAACGGCCTCTTA
GCCAAACTGGAAGGATACGGAATTCGTGGACGGGTTCTTGAGTGGTTCCA
GAGTTACCTTACAGAACGACGTCAACGAGTGGTTGTCAATGGCGCAACAT
CTGACTGGAAGACCCCCCTTGCTGGAGTCCCACAGGGCTCTGTTTTAGGA
CCTACACTTTTCATTTTATACATAAACGATCTGCCCTCCAGATGTACAAC
CTGTGTGGCGAACTTGTTCGCAGATGATACCTCACTCACAGCAGCTCACC
GTTCTATCAATACTGTTGTAGACTCACTGAACAAAGACCTCGCCACTGTA
TCAGACTGGCTACAAAGCTGGAAACTCGAGGCTAACGGAGACAAATGCAA
AGTTATGTTTCTCACTACCCGTCCCCTCCCACAAAGGATCCCCCCAGTTA
TCCTAGCCGGTACTATTCTGCAGGTTGTTTACAGCCACAAACACCTGGGC
GTGACCTTAACCTGCAAGCTCACATGGTCTTTGCACGTTGAAGCCACAAC
AAACAAGGCCAGACGAACGGCTGGAATGCTCTGTGCTCTACGGAAGAAGG
TGCCCAAGAACATTCTACTACAGCTATACAAGATCATGATAAGACCAGTT
TTAGAATATGCTGACATAGTATGGTCAGGCCTCACCGCACGCGATGCAAG
ATCAGTTGAATCTGTCCAGTACCGATCAGCTAGAATGATAAGTGGACACC
GTGGAATCCCTTACCCTTCCTACCGAACCGTCTACTCCCAACTATGTCTT
CCCTCACTCACCTTCCGCTGTAAATTCCACACAGTCACCACCCTCTTCAA
ACTCATGAACGGACACTGCCCACCCCACCTACTCAGTCTTCTACCAACAA
CAAGATCATCTTCCATAGACTCCAGATATCCCCTCCGAAATGGAAATAAC
CTCTCTGTGCAAACTCCCAAAAGCGTTAGGACTCAGAAAGCGTTCTTCCA
CAGGGCTACCAAACTCTGGAACTTGCTTCCACCAGAAACACGTACAGCTA
CCTCTGTATCCTCCTTCAGAGGAAAAGCTTGGGCCTCCCTAGGAGACCCG
TTCTTGGTCTAAGTTAATATACATATGTATACACTTCTATGCGACACTAG
CTGTTAACATTATAATTACACGCAAGTATTTCAATAGAATGTAAGAAGTT
TTACTCTACACTGTCTAAAATAGTTAATTCGTGTACATAATTGTAAATAC
GTATGTCAACCTCTTAATTAATTTGGTAGTGATTTCTATGTGTGCTTAAT
GAAATGATTATGTATGTTATTTGTAATGATAACGTTTTTCTCCCAGGGTT
GCCCTTTGTAATAGCTTAAGCTAGTTGGGCAACCCTGGCATGTTTGTAAA
TACAATGCATGCCAAATGAATAAACAAAT Coding sequence (CDS) from alignment at Sc0000175:480194..482322+ >transcript:BL80820_cuf0 ID=transcript:BL80820_cuf0|Name=transcript:BL80820_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1812bp|location=Sequence derived from alignment at Sc0000175:480194..482322+ (Branchiostoma lanceolatum)
GCTGAAGCTACTTATATCAGGGAAGTCCTGACTGACGTAGAGGGTGGAAA
CACAAGACGTTTCTTTAAGTACACCAAGGCCGTACTAGGACAAGCTTCAA
CGGGCGTACCAGCACTTAAAATGGGGACTAACATCCTTGACACTCCCAGA
GGGAAGGCCACAGCACTAAACGACTACTTCGTGCAGCAGACCGACTTACC
CGGCAAAGATGACTCCTCCCCTGTTTTCGTTCCACCCGTCTCTCCTGGGA
CTTTCCTTGAAACACTTCAAGTAACAGTGGACGATGTCCGTCAGCAACTC
CTCAGCCTCAAGGTCGGAAAGTCTTGCGGCCCAGATGACATTACACCGAA
CCTCTTACGGCGAGTGGCCGACCCCATCTCAGGACCATTAACAAAACTGT
TCAATATGTCGCTTTCCCTCGGACAAGTGCCCTCCAGATGGAAGGAAGCA
AACGTGACCCCAATCCACAAAGGAGGTAGCCGCCATGCTCCCAACAACTA
TAGGCCAATATCCCTCCTGAACATCATTCCCAAAGTTTTGGAAAATATTG
TAAACAAACGCCTAATGGAACACATTCGTCCAATGCTGACACAGTATCAA
AGTGGATTTCGAGCGCAGGACAACACAACTCTTCAACTGGTCCGACTTGT
TGACGAGTGGACCAAAGCCATTGACAAAGGAGAGGTGGTTGGCTGCGTAT
TCTTGGACCTGCGAAAGGCTTTTGATAAAGTCTGGTACAACGGCCTCTTA
GCCAAACTGGAAGGATACGGAATTCGTGGACGGGTTCTTGAGTGGTTCCA
GAGTTACCTTACAGAACGACGTCAACGAGTGGTTGTCAATGGCGCAACAT
CTGACTGGAAGACCCCCCTTGCTGGAGTCCCACAGGGCTCTGTTTTAGGA
CCTACACTTTTCATTTTATACATAAACGATCTGCCCTCCAGATGTACAAC
CTGTGTGGCGAACTTGTTCGCAGATGATACCTCACTCACAGCAGCTCACC
GTTCTATCAATACTGTTGTAGACTCACTGAACAAAGACCTCGCCACTGTA
TCAGACTGGCTACAAAGCTGGAAACTCGAGGCTAACGGAGACAAATGCAA
AGTTATGTTTCTCACTACCCGTCCCCTCCCACAAAGGATCCCCCCAGTTA
TCCTAGCCGGTACTATTCTGCAGGTTGTTTACAGCCACAAACACCTGGGC
GTGACCTTAACCTGCAAGCTCACATGGTCTTTGCACGTTGAAGCCACAAC
AAACAAGGCCAGACGAACGGCTGGAATGCTCTGTGCTCTACGGAAGAAGG
TGCCCAAGAACATTCTACTACAGCTATACAAGATCATGATAAGACCAGTT
TTAGAATATGCTGACATAGTATGGTCAGGCCTCACCGCACGCGATGCAAG
ATCAGTTGAATCTGTCCAGTACCGATCAGCTAGAATGATAAGTGGACACC
GTGGAATCCCTTACCCTTCCTACCGAACCGTCTACTCCCAACTATGTCTT
CCCTCACTCACCTTCCGCTGTAAATTCCACACAGTCACCACCCTCTTCAA
ACTCATGAACGGACACTGCCCACCCCACCTACTCAGTCTTCTACCAACAA
CAAGATCATCTTCCATAGACTCCAGATATCCCCTCCGAAATGGAAATAAC
CTCTCTGTGCAAACTCCCAAAAGCGTTAGGACTCAGAAAGCGTTCTTCCA
CAGGGCTACCAAACTCTGGAACTTGCTTCCACCAGAAACACGTACAGCTA
CCTCTGTATCCTCCTTCAGAGGAAAAGCTTGGGCCTCCCTAGGAGACCCG
TTCTTGGTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000175 | genome | Sc0000175:480194..482322 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL80820_cuf0 |
| Biotype | protein_coding |
|
