|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL80676_cuf0 >transcript:BL80676_cuf0-protein ID=transcript:BL80676_cuf0-protein|Name=transcript:BL80676_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=292bp
MAKSNDGEYVKILKKDWDAVMDRLLRLESRLNHVECNVDAVSDDVSKSLR
DNTDITKSLEFTQENMEELTGRIEIHEREQQNLEFDLTELEQYGRRWNLL
FHGMDESQGENCTEKVLDVISEEMQIVTSNMRMCGVNRLGKFSRNATRPR
PIIARFTCRADREKVWRGKTRLRGKRVFISDDVPAKIRNIRRQKLVPALK
RAKAKGKKASIVGSKLVIDSQSYMHWQIPNKWLHDEPVADEPGEEEEARP
KSPQADGRRTRRGLRDPDPPRQLRSQQTNVGRKLRSHRGGRR Run BLAST on NCBI mRNA from alignment at xpSc0039704:40635..42270+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL80676_cuf0 ID=transcript:BL80676_cuf0|Name=transcript:BL80676_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1636bp|location=Sequence derived from alignment at xpSc0039704:40635..42270+ (Branchiostoma lanceolatum)
AACATAATGGCGGCTGCGTAATTTTCTCCGCCAAGTCGGCACAACAAATT
CTTTGCATGTCCTTGTAATTGTTGAAGCTCCGCAATCTGTGAACACGTCT
GAGAAAGTTGTAACCCTCGCTGTCCATTCTTGGTGAAAATGGCGAAGTCT
AATGACGGAGAATATGTGAAAATCCTGAAAAAGGATTGGGACGCCGTCAT
GGACAGACTACTACGGCTGGAGTCGCGACTCAATCACGTAGAATGCAACG
TAGACGCAGTGTCTGACGACGTCTCAAAGTCCCTGAGAGACAACACTGAT
ATCACCAAGTCACTGGAGTTCACTCAAGAGAACATGGAAGAGTTAACCGG
GAGAATTGAGATCCATGAGAGGGAACAGCAAAACCTGGAATTTGACCTGA
CCGAACTGGAGCAGTACGGACGACGGTGGAATTTACTCTTCCACGGAATG
GACGAAAGCCAGGGAGAAAACTGTACAGAGAAAGTGTTGGATGTAATTAG
TGAGGAAATGCAGATTGTGACCAGCAACATGCGGATGTGCGGCGTGAATC
GCCTTGGGAAGTTTTCAAGAAATGCAACCAGGCCTCGTCCGATCATCGCT
CGGTTCACCTGCCGGGCTGACAGAGAAAAGGTGTGGAGGGGTAAGACGAG
ACTGCGAGGGAAGCGTGTGTTCATTTCGGACGATGTCCCAGCCAAGATCC
GCAACATCAGGAGACAGAAGCTTGTACCAGCCTTGAAGAGAGCCAAAGCT
AAGGGAAAGAAGGCATCGATTGTCGGCAGTAAGTTGGTGATAGACAGCCA
GTCGTACATGCACTGGCAAATCCCGAATAAGTGGCTTCATGATGAACCCG
TAGCAGACGAACCAGGAGAAGAGGAAGAAGCTAGACCGAAATCACCACAA
GCAGATGGAAGACGCACCCGACGAGGACTGAGAGATCCAGACCCACCACG
ACAGCTGAGAAGTCAACAGACGAACGTGGGACGAAAGCTGAGATCTCATC
GGGGAGGAAGACGATAAAAACCCTTGTTTCGGTCAAGCAACTTGACTGTG
TTATTTAGATACTTTAGAAAAATACGAAAGGCCTGGTAAGTTTCTATTCT
CTTATTGCTGACAAGAAGGACTGTAACAACTTTTCTAAGAGAAAAACAAA
ACGATAGAACTTCAAGTTGTGCTGACTGATTCTTCTATATACATATATAC
ACAAAGTTCTGATATACATATAGACACAAAGTTCTGATTTGATTTTTCTT
ATTCAGTAGCTTATGATTTTCCAATTTATATTATGTTGATTATTATCATT
GATTTCGTCTGTACTATGATTTGTTTTGATATTATTTGCTACAATCTCTG
TATGGGCACCGGATCACAAGCCCGAGGCCAATCGGGGAAGACGCATATCT
ATCTTTATGTTTACATTACGCTTTTATTTGTGGACAGGTGTCAAAGACTT
CTGGTGGGAAACGGATCGCGGATCCCTTTCCCACTGGTAGAGACACACTG
TGATCATTACTTTATGTTATGTTTATTTGGTTGCTTTAGTTTGATTATGT
TGTACATACGCATACTTGTGGGCTTCACTATCAAATGCCGCAGGTTTCCG
CCGCCTAGACGGAATTCCTGCATAATGAGTTTATCA Coding sequence (CDS) from alignment at xpSc0039704:40635..42270+ >transcript:BL80676_cuf0 ID=transcript:BL80676_cuf0|Name=transcript:BL80676_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=879bp|location=Sequence derived from alignment at xpSc0039704:40635..42270+ (Branchiostoma lanceolatum)
ATGGCGAAGTCTAATGACGGAGAATATGTGAAAATCCTGAAAAAGGATTG
GGACGCCGTCATGGACAGACTACTACGGCTGGAGTCGCGACTCAATCACG
TAGAATGCAACGTAGACGCAGTGTCTGACGACGTCTCAAAGTCCCTGAGA
GACAACACTGATATCACCAAGTCACTGGAGTTCACTCAAGAGAACATGGA
AGAGTTAACCGGGAGAATTGAGATCCATGAGAGGGAACAGCAAAACCTGG
AATTTGACCTGACCGAACTGGAGCAGTACGGACGACGGTGGAATTTACTC
TTCCACGGAATGGACGAAAGCCAGGGAGAAAACTGTACAGAGAAAGTGTT
GGATGTAATTAGTGAGGAAATGCAGATTGTGACCAGCAACATGCGGATGT
GCGGCGTGAATCGCCTTGGGAAGTTTTCAAGAAATGCAACCAGGCCTCGT
CCGATCATCGCTCGGTTCACCTGCCGGGCTGACAGAGAAAAGGTGTGGAG
GGGTAAGACGAGACTGCGAGGGAAGCGTGTGTTCATTTCGGACGATGTCC
CAGCCAAGATCCGCAACATCAGGAGACAGAAGCTTGTACCAGCCTTGAAG
AGAGCCAAAGCTAAGGGAAAGAAGGCATCGATTGTCGGCAGTAAGTTGGT
GATAGACAGCCAGTCGTACATGCACTGGCAAATCCCGAATAAGTGGCTTC
ATGATGAACCCGTAGCAGACGAACCAGGAGAAGAGGAAGAAGCTAGACCG
AAATCACCACAAGCAGATGGAAGACGCACCCGACGAGGACTGAGAGATCC
AGACCCACCACGACAGCTGAGAAGTCAACAGACGAACGTGGGACGAAAGC
TGAGATCTCATCGGGGAGGAAGACGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xpSc0039704 | genome | xpSc0039704:40635..42270 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL80676_cuf0 |
| Biotype | protein_coding |
|
