transcript:BL80634_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL80634_cuf2
Unique Nametranscript:BL80634_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL80634_cuf2

>transcript:BL80634_cuf2-protein ID=transcript:BL80634_cuf2-protein|Name=transcript:BL80634_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=443bp
MALTTINPQSNETHFDEEETGNTGWQKNAQAGDNLSQETYGEEKGTYSAN
LPANVTNIKKEMEDTEWQQDAVNEETRSVNCTGHVKGVSSHQVVQNRTRL
MTNMEEQTKDTGRQQVEEKYTANDQTLNCTGYDEEDLPQAAVQDYTIQES
SHVTQHTYICWKCNYRTEERDLIFKHMRKHTERKHKCDQCDYSATRKGHL
EQHVMIKHTGEKPYMCGECGYRTAVRCHLSRHMKTHTAIKPFKCDQCDYS
AVQKSHLDEHAMTKHTDDKPYLCEECGYRTANNSTLTRHKRAHTGEGPHK
CGQCDYSALRKNSLKEHVMSKHTDEKPYLCGECGYRTSAKSNLNKHMRKH
TGEKLYKCDQCDYSAAQKGTLDQHIMVKHTGEKPYMCGECGYRTADRSAL
TRHMRRHTGEKPYKCNQCDYSATVKGNLSKHMLVKHTAEKTLI
Run BLAST on NCBI

mRNA from alignment at Sc0000044:1731243..1733707+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL80634_cuf2 ID=transcript:BL80634_cuf2|Name=transcript:BL80634_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2465bp|location=Sequence derived from alignment at Sc0000044:1731243..1733707+ (Branchiostoma lanceolatum)
CTTCAGTATCGTATCTGCCAAATTCACGATTTTCACGGAATCGGAGAAGA
CTTAGATGGCGCTAACCACCATAAACCCACAGGTAAGACATATGATTGTC
GGTTGGGATCGGTAATTCATTTGCAGCGTAACATTTAAGCGTTAAATGCA
TATGAAACAGCTGTCAATTTTCAATCACAACCAGAAACGGTACAGAAATG
ACGACGAATGTTATAGTAATGGTAAGGAGGTTTGAATAGACCTTGGTAAT
AGTGACCTCAATGTGTAGGTTTAGGTTTAAAATGAAAAAAAAAATGTTTG
AAAAGACCTAGTATGTTTCCATTCGAAATTAAAGGCCGCCGTCCACATTG
TACTTACCTTAGATCGCGTCACGCTGCAGCAAAACTGGCAGGTATAGAGA
AGTCAAAGATCACGGAATCAGTGATTAGTCTTGAAGGGTCTGCATCCCCT
ATAAATTCAGTTCAGTTCCAGTATATTTGTTTGGCCAGAAATACATCAAG
TTCGCTTGGCGGCGCTTTTCCAAAGGTTCCTGGGGAGGGGGGGTCAACCC
CTTACATAGAAATACATAGCGACAATTGACCTATTTGAGTATTTCTGACT
TTTTCTGTTTCAAAGATGGACGAGTTAACATGTGGGCTTCTTCATACGAA
ACAAGAGTCGAACGAGACGCATTTCGACGAGGAGGAGACAGGAAACACGG
GATGGCAGAAGAATGCGCAAGCCGGGGACAACCTCTCACAGGAAACGTAC
GGTGAGGAAAAAGGAACGTACAGTGCAAACCTACCTGCAAACGTTACAAA
CATAAAAAAGGAGATGGAAGACACAGAATGGCAGCAAGACGCTGTAAACG
AGGAAACGCGCAGCGTGAATTGCACCGGGCATGTTAAGGGAGTCTCGTCA
CATCAAGTCGTACAGAACCGCACACGGCTAATGACCAACATGGAGGAGCA
GACAAAAGACACAGGACGGCAGCAGGTAGAGGAAAAGTATACTGCAAATG
ACCAGACGTTAAATTGTACGGGTTATGACGAAGAAGACTTGCCACAGGCT
GCAGTACAAGACTATACAATACAAGAGAGCAGCCATGTGACACAGCATAC
CTACATTTGCTGGAAGTGCAATTACCGAACAGAAGAAAGGGATCTCATAT
TCAAACATATGAGAAAACATACCGAAAGGAAACACAAATGTGACCAGTGC
GATTATTCTGCAACACGGAAAGGTCATTTAGAACAGCACGTTATGATAAA
ACACACCGGTGAGAAGCCCTACATGTGTGGGGAGTGCGGATATAGGACAG
CTGTTAGGTGTCACCTATCTCGTCACATGAAAACACATACAGCTATAAAG
CCTTTTAAATGTGACCAGTGCGACTATTCTGCTGTACAGAAAAGCCATTT
AGATGAACACGCCATGACAAAACATACTGATGATAAACCCTATTTGTGTG
AGGAGTGCGGATACAGGACAGCAAACAATTCTACCTTGACCCGACATAAG
AGAGCACATACCGGTGAGGGGCCTCATAAATGTGGCCAGTGTGACTATTC
TGCATTACGGAAGAACAGTTTAAAGGAACACGTAATGTCAAAACACACCG
ATGAGAAGCCCTACTTGTGTGGGGAGTGCGGATACAGGACGTCTGCTAAG
TCTAACCTTAACAAACATATGAGAAAACATACAGGTGAGAAACTCTATAA
ATGTGACCAGTGCGACTATTCAGCTGCACAGAAAGGCACTTTAGACCAAC
ACATCATGGTGAAACACACCGGTGAGAAACCCTACATGTGTGGGGAGTGC
GGATATAGGACGGCTGACAGGTCAGCTCTAACCAGGCATATGAGAAGGCA
CACTGGTGAGAAACCCTACAAATGCAATCAGTGCGACTATTCTGCAACTG
TAAAGGGTAATCTAAGCAAACACATGCTGGTTAAACACACTGCTGAGAAA
ACATTGATTTGACAGGATTACAGTTTACGGCTGTTATGTTTACTTTGCAG
CAATGGATGACAACATCTTTTTTTCAGTCAGCTTGCTGTTAAGATCAGAT
AAGGAGTGGTACTGTAGCTTGTTATAAATTCTAACATTATGTAATATAAC
GTACATGTATTTCAATTCGCAATGTGGCAGATACTTGTCCCATATGTTTT
TATAAGAGACAGACCATCTGAATTTCTAAGAAACGCTGACAGAAGACAGA
AACATGTGAAGTGCAGACAAGATAAGACAGAAACATGTGAAGTGCTGACA
ATATAAGACAGAGAAACATGTGAAATGATGACCCTTCTTGAAGAACTGTG
ACATAATTAATTGACCTGTCAAACACATCTGGTAAAGATCCTGGATTAGA
CAAGGAGTCCCACACAGATAAAAAGGACAGACAATAGGCAAGAGAGCACA
GTTGGACGGCAGAAATAGAGGAGAGAGGGGGTGAGCGTGAAATAAAGTTT
GTTCCTCGGCCACGG

Coding sequence (CDS) from alignment at Sc0000044:1731243..1733707+

>transcript:BL80634_cuf2 ID=transcript:BL80634_cuf2|Name=transcript:BL80634_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2664bp|location=Sequence derived from alignment at Sc0000044:1731243..1733707+ (Branchiostoma lanceolatum)
ATGGCGCTAACCACCATAAACCCACAGTCGAACGAGACGCATTTCGACGA
GGAGGAGACAGGAAACACGGGATGGCAGAAGAATGCGCAAGCCGGGGACA
ACCTCTCACAGGAAACGTACGGTGAGGAAAAAGGAACGTACAGTGCAAAC
CTACCTGCAAACGTTACAAACATAAAAAAGGAGATGGAAGACACAGAATG
GCAGCAAGACGCTGTAAACGAGGAAACGCGCAGCGTGAATTGCACCGGGC
ATGTTAAGGGAGTCTCGTCACATCAAGTCGTACAGAACCGCACACGGCTA
ATGACCAACATGGAGGAGCAGACAAAAGACACAGGACGGCAGCAGGTAGA
GGAAAAGTATACTGCAAATGACCAGACGTTAAATTGTACGGGTTATGACG
AAGAAGACTTGCCACAGGCTGCAGTACAAGACTATACAATACAAGAGAGC
AGCCATGTGACACAGCATACCTACATTTGCTGGAAGTGCAATTACCGAAC
AGAAGAAAGGGATCTCATATTCAAACATATGAGAAAACATACCGAAAGGA
AACACAAATGTGACCAGTGCGATTATTCTGCAACACGGAAAGGTCATTTA
GAACAGCACGTTATGATAAAACACACCGGTGAGAAGCCCTACATGTGTGG
GGAGTGCGGATATAGGACAGCTGTTAGGTGTCACCTATCTCGTCACATGA
AAACACATACAGCTATAAAGCCTTTTAAATGTGACCAGTGCGACTATTCT
GCTGTACAGAAAAGCCATTTAGATGAACACGCCATGACAAAACATACTGA
TGATAAACCCTATTTGTGTGAGGAGTGCGGATACAGGACAGCAAACAATT
CTACCTTGACCCGACATAAGAGAGCACATACCGGTGAGGGGCCTCATAAA
TGTGGCCAGTGTGACTATTCTGCATTACGGAAGAACAGTTTAAAGGAACA
CGTAATGTCAAAACACACCGATGAGAAGCCCTACTTGTGTGGGGAGTGCG
GATACAGGACGTCTGCTAAGTCTAACCTTAACAAACATATGAGAAAACAT
ACAGGTGAGAAACTCTATAAATGTGACCAGTGCGACTATTCAGCTGCACA
GAAAGGCACTTTAGACCAACACATCATGGTGAAACACACCGGTGAGAAAC
CCTACATGTGTGGGGAGTGCGGATATAGGACGGCTGACAGGTCAGCTCTA
ACCAGGCATATGAGAAGGCACACTGGTGAGAAACCCTACAAATGCAATCA
GTGCGACTATTCTGCAACTGTAAAGGGTAATCTAAGCAAACACATGCTGG
TTAAACACACTGCTGAGAAAACATTGATTTGAATGGCGCTAACCACCATA
AACCCACAGTCGAACGAGACGCATTTCGACGAGGAGGAGACAGGAAACAC
GGGATGGCAGAAGAATGCGCAAGCCGGGGACAACCTCTCACAGGAAACGT
ACGGTGAGGAAAAAGGAACGTACAGTGCAAACCTACCTGCAAACGTTACA
AACATAAAAAAGGAGATGGAAGACACAGAATGGCAGCAAGACGCTGTAAA
CGAGGAAACGCGCAGCGTGAATTGCACCGGGCATGTTAAGGGAGTCTCGT
CACATCAAGTCGTACAGAACCGCACACGGCTAATGACCAACATGGAGGAG
CAGACAAAAGACACAGGACGGCAGCAGGTAGAGGAAAAGTATACTGCAAA
TGACCAGACGTTAAATTGTACGGGTTATGACGAAGAAGACTTGCCACAGG
CTGCAGTACAAGACTATACAATACAAGAGAGCAGCCATGTGACACAGCAT
ACCTACATTTGCTGGAAGTGCAATTACCGAACAGAAGAAAGGGATCTCAT
ATTCAAACATATGAGAAAACATACCGAAAGGAAACACAAATGTGACCAGT
GCGATTATTCTGCAACACGGAAAGGTCATTTAGAACAGCACGTTATGATA
AAACACACCGGTGAGAAGCCCTACATGTGTGGGGAGTGCGGATATAGGAC
AGCTGTTAGGTGTCACCTATCTCGTCACATGAAAACACATACAGCTATAA
AGCCTTTTAAATGTGACCAGTGCGACTATTCTGCTGTACAGAAAAGCCAT
TTAGATGAACACGCCATGACAAAACATACTGATGATAAACCCTATTTGTG
TGAGGAGTGCGGATACAGGACAGCAAACAATTCTACCTTGACCCGACATA
AGAGAGCACATACCGGTGAGGGGCCTCATAAATGTGGCCAGTGTGACTAT
TCTGCATTACGGAAGAACAGTTTAAAGGAACACGTAATGTCAAAACACAC
CGATGAGAAGCCCTACTTGTGTGGGGAGTGCGGATACAGGACGTCTGCTA
AGTCTAACCTTAACAAACATATGAGAAAACATACAGGTGAGAAACTCTAT
AAATGTGACCAGTGCGACTATTCAGCTGCACAGAAAGGCACTTTAGACCA
ACACATCATGGTGAAACACACCGGTGAGAAACCCTACATGTGTGGGGAGT
GCGGATATAGGACGGCTGACAGGTCAGCTCTAACCAGGCATATGAGAAGG
CACACTGGTGAGAAACCCTACAAATGCAATCAGTGCGACTATTCTGCAAC
TGTAAAGGGTAATCTAAGCAAACACATGCTGGTTAAACACACTGCTGAGA
AAACATTGATTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL80634gene:BL80634Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL80634_cuf2-E1BL80634_cuf2-E1-1564476830-212887Branchiostoma lanceolatumexon
BL80634_cuf2-E2BL80634_cuf2-E2-1564476830-212890Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL80634_cuf2transcript:BL80634_cuf2-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000044genomeSc0000044:1731243..1733707 +
Properties
Property NameValue
Transcript idBL80634_cuf2
Biotypeprotein_coding