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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL80629_cuf0 >transcript:BL80629_cuf0-protein ID=transcript:BL80629_cuf0-protein|Name=transcript:BL80629_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=126bp
ASKKTQEDMKALLYSLCNDLAGLLTVFVATFLTHVNSQFKIATVTVDNPW
VLWPIMFLKPLFAVGKMFWTYYDIRAKQGCSWNLRVAAAGAIVYVSLLIT
FYALAYDDDFNCKVCPQFFNNGTLCG Run BLAST on NCBI mRNA from alignment at Sc0000044:1628705..1632700+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL80629_cuf0 ID=transcript:BL80629_cuf0|Name=transcript:BL80629_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3996bp|location=Sequence derived from alignment at Sc0000044:1628705..1632700+ (Branchiostoma lanceolatum)
CGCCTCAAAGAAGACACAAGAAGACATGAAAGCCTTACTCTACAGTTTGT
GTAACGACCTGGCTGGCTTACTCACTGTCTTCGTCGCCACCTTCCTAACC
CATGTCAACAGCCAATTCAAAATAGCCACGGTAACAGTAGACAACCCGTG
GGTTCTGTGGCCAATCATGTTTCTAAAGCCTCTCTTTGCTGTAGGCAAAA
TGTTTTGGACGTATTATGACATTAGGGCAAAACAAGGATGCAGCTGGAAT
CTTAGGGTTGCTGCTGCGGGTGCGATTGTTTATGTATCTCTTCTTATAAC
TTTCTACGCGTTGGCATACGACGATGATTTTAACTGTAAGGTATGTCCCC
AGTTTGTCAATAACGGAACATTGTGCGGTTAAACTAAGTGACGGACTCCA
GGAATGTCATCTTTCCCACTCTGCAAGAAAAAGCACTCTGAAATAGGAAT
GGAATCAGTGTTTACAAAGAAGCCAACAAAGCTTTTTTGATTTAATGGGT
TACTTTTGCCTCGGAATTTTGTGGAGTTTAATCTAGCTGTTCAATGGGTC
CCTCTTGGACTGGTTAACTATGATATTTTGTATAAAGCTAGATTATGACC
AATGTAGAATACTAAGATCGATATTTTAGGTCCCTGTTATATGGTTAACG
TAAGTCGTTCCATGCTGTATGTAATTGGGGACTTCAATCACCTATGTGAA
ACAATGGCAACAATATTGAAATGTAAAGCAGTAGCTAGTAAGAATATACT
GTTTTGGAATTTGGCCAATTGGACAGGAGCAAATATCATGGAGACGAGAG
AAGGATCGGAGGACAGACGAGATCTGGAGACGGATAAAAAGACACGAAGA
TGATATAGAATCATAAGAACTCAGTAATTGTGTAATTGTGACGTAGTAAT
TGTGTTGAATATGGTATAATACCTATTTAATCTACATAGCTGTTGATTTT
ACCGAATATGCACATATATGCACATTTTGACCCCCTGAATCTGAAGGAAA
TAAAACGGTTTCAAAAAGCCATATACACGTCGCCACTCTGTTTTTACGCT
GTGTGTTTCATATTATACGTCCCTCTATTTAAACCTCGCTGAAACTTGCA
CAATCAGAATTTCTATGTTACCTGGGAAATATTTCATATCCCCATTAGGT
CACGCACACAATCTCGAGGCTAAGGTCCGCCAATTCTCACGGCATGCTCG
CAGTATCTAGAACAAACATTGATCAAAGCAGGTTATGTACACATTGTGAC
CCGTGTTGTTGACTTTTCCTACGACTTTCAGACATTTATGAGATCAGCAC
ATATTTCGGCGGCGTAGCTGTTTCATTGCTCCGCTAAGGTCAGACAAGGT
GCCAACTTACCGATAACATTATGTAGTCGGTACATTTCAAAGCGTTTGTC
GTCACCAACTCGATCCCACAGAGCGCATATTTGAACAAAGCAGATTCACA
ACACCACCTTTCGACATGATGATGATGTTCAATCTGTATCAAAGGACGAC
ATAACACTGTCGTCTCATGTCTGCAAAAAGTTTCAAAAGCAGCCTTTACG
TTTTAGCAAACTATAATAGGGTCAAATGTTAATGCAAATTACATTGGGGT
TGGAAAAGCCACTAAATAATTCGATAGCTTATACCCCCATTCCACTTGGA
CGGCGCTCTCGCCGCGCCCTCACGGCGACCAGAGCGCCGTGAGAGGCGCC
GATTTCCTGGAAAACATGCTCAAGTGGAATCTCTACGGCGACCTCAGCGC
GACCAAAATGTCAAATGACAGCAACTTTTTATGAGCGACCAAAGATTTCA
CAGATCGCTCAACGAATTCTAGAGATAAAGAACGAATTTTTTTTTCGTTT
TGTGTGCTTTGTTGTCTTCTCAGTCATACCTTTACCTCTTGCATCATATT
TGAATGATAAAATCAAGGGGAAAACAGATTAAATTTTGATCGCTGCACGG
TCGCTTAGTGTGTGTCTTAAGTTATATATTTGTTCAAATATGTTTTTTTG
TCTGTCATGTAACCTGTTTGCTATGAATATCTTTTATCATGCTACGTTAT
TATAGAAACGTAAATCACAGAATTGTGAAACACTTTTTGAACCACAGACA
ATAAAACTTGGAGGGAATTTAATTTGAATGGAAGCAAGTACTTGTAGTTA
TTCGTCAATTTGTAATACCACTAGGAAAGTTTTGATTTGACCACAAAATT
CCCAGAAATTCAAGATACACCGCTTCAAGAATGAAATTTGTTTGAACTAC
AGTTAAAACCATTCAATCATTCAATCCTCGTAGAGTGCTCGCTGCGATCC
TTAAGCGCTGCGGCCCTTTGATCCCTCGCTGCGGCCCTTTGATCCCATCG
CCATCCTCGGCGCGCTCACGGCGACTGTTTTGAACATGTTCAAAACCATC
GCCGAGGTGACGGCGCGCATGACGCGCATGGCGCTCTCACCGCGCTCCCA
ATGCGCTCTCGCCGCGCTCTCGGCGCTCTCACGGCGCTCACGGCGCTCTC
ACGGCGATCTGGCCAAATTGACGTCGCCGTGAGAGCGCGGCGAGAGCGCC
GTCCTAGTGGAATGGGGGTCTAAAGCATTATGTAGCCAATTAATTCACCA
GCAATTCCACCCCCCCCATGACATACCACTGATTTATCATAGTTAAAATT
TGCCGTAATGTGTAATTATAATCTTGACTTGCACTCCGGTTAAAATATTG
CCACACATTGGCGTACGTGGACGTGGTCCAGCCACACTTATATAAACTTC
GATTCATTTATTTTTCATTGTGATATCTGGTTTATGATACAATTAATTAC
ACAGGAAAACAAGAAATATAAAACAAAAGCTTTATCGTCGAGGCTCCTTC
TTTAAAAAGGTATAGTTTGGTAAAAATCTGACCAATGGTAGCCATGGACG
GATTAANTGGTAGCCCTGGACGGATTAATGAATAACAGCTATGTTCAAAG
GTGAACTACATTCTTCACTCCGCCATTTTGCTGCCAACCTACACAACACA
CAAGGCTGCACTACATTTAGAGACTTTAGAAACGGTAGTGGTCTGGGAAA
AGAAAAGTCTATTCAACATGGTCACAACAACAGCTTATGACAAATTCTAC
GAAGAGAGAGCCAGCTTCGCTACCAAGGGCTCAGGTAGACTTACTCAGAA
ATCCTGCTGTTGTACAACGATTTGCAAGAACCGGTGGACTTTGTCTTTTG
GGATTTTTGGAGTAGTCTTCTTTGTCATGGCTTTTCTGATGCTTCTGGAC
TATGACGACATTCAGAAATGCGCCTTGACCAGTGGGTGCTACTTTGCAGG
ATTGATCCTTTCTTGTATGTTTTTCCTGCTCGCCCCTGCTGTGAAATATG
TGTGCAAATATGAGGGACTCGTCAACGTCAACCCTATCTTCCTCGCTTTA
AAACTTGTCGTCATCGCTTGCGGAGACAGTTGCTGCTGCTATGGAAGTAA
CTTACGGGGAGATTACATAGACATGGGTGGCGAAAAAGATCAAGAAAGTG
CGGGCAATAGGAAAGACGACTTCGAAAAAGGTAGCAAAGAAAAAGGCGTC
GTCGAAGGAAATGGCAACAACAAAGATTACTGCATAAGGGTGACGGACTA
CCGAGAATACGCCTCAAAGAACACTCAAGAAGACATGAAAGCCTTGCTCT
ACAGTTTGTGTAACGACCTGGCTGGCTTACTCACTGTCTTCGTAGCCACC
TTCCTAACCCATGTCAACAGCCGTTTTAAAATAGCCACGGTAACAGTAGA
CAACCCGTGGGTTCTGTGGCCAATCATGTTTCTAAAGCCTCTCTTTGCTG
TAGGCAAAATGTTTTGGACGTATTATGACATTAGGGCGAAACAAGGCTGC
AGCTGGAATCTCAGGGTTGTTGCAGCGGGTGCGATTGTTTATGTAGCTCT
TCTTGTAACTTTCTACGCGTTGGCATACGACGATGATTTTAACTGTAAGG
TATGCCCACAGTTTTTCAACAACGGAACATTGTGCGGTTAAACTAG Coding sequence (CDS) from alignment at Sc0000044:1628705..1632700+ >transcript:BL80629_cuf0 ID=transcript:BL80629_cuf0|Name=transcript:BL80629_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=762bp|location=Sequence derived from alignment at Sc0000044:1628705..1632700+ (Branchiostoma lanceolatum)
GCCTCAAAGAAGACACAAGAAGACATGAAAGCCTTACTCTACAGTTTGTG
TAACGACCTGGCTGGCTTACTCACTGTCTTCGTCGCCACCTTCCTAACCC
ATGTCAACAGCCAATTCAAAATAGCCACGGTAACAGTAGACAACCCGTGG
GTTCTGTGGCCAATCATGTTTCTAAAGCCTCTCTTTGCTGTAGGCAAAAT
GTTTTGGACGTATTATGACATTAGGGCAAAACAAGGATGCAGCTGGAATC
TTAGGGTTGCTGCTGCGGGTGCGATTGTTTATGTATCTCTTCTTATAACT
TTCTACGCGTTGGCATACGACGATGATTTTAACTGTAAGGTATGCCCACA
GTTTTTCAACAACGGAACATTGTGCGGTTAAGCCTCAAAGAAGACACAAG
AAGACATGAAAGCCTTACTCTACAGTTTGTGTAACGACCTGGCTGGCTTA
CTCACTGTCTTCGTCGCCACCTTCCTAACCCATGTCAACAGCCAATTCAA
AATAGCCACGGTAACAGTAGACAACCCGTGGGTTCTGTGGCCAATCATGT
TTCTAAAGCCTCTCTTTGCTGTAGGCAAAATGTTTTGGACGTATTATGAC
ATTAGGGCAAAACAAGGATGCAGCTGGAATCTTAGGGTTGCTGCTGCGGG
TGCGATTGTTTATGTATCTCTTCTTATAACTTTCTACGCGTTGGCATACG
ACGATGATTTTAACTGTAAGGTATGCCCACAGTTTTTCAACAACGGAACA
TTGTGCGGTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000044 | genome | Sc0000044:1628705..1632700 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL80629_cuf0 |
| Biotype | protein_coding |
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