transcript:BL79079_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL79079_cuf0
Unique Nametranscript:BL79079_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL79079_cuf0

>transcript:BL79079_cuf0-protein ID=transcript:BL79079_cuf0-protein|Name=transcript:BL79079_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=130bp
SKIKTDFHIENYLQSVQNKSFITHTTKLRIGAHCLEIEKGRHRNVPANQR
LCPTCKENVEDEYHFLMECPTYKDERVKLLQTIKCKTNVTLPQSKTETFR
VLMSCPETISVYLGQYIFTSMQKRIREIAI
Run BLAST on NCBI

mRNA from alignment at Sc0000046:370791..371478-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL79079_cuf0 ID=transcript:BL79079_cuf0|Name=transcript:BL79079_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=688bp|location=Sequence derived from alignment at Sc0000046:370791..371478- (Branchiostoma lanceolatum)
ATTCAAAAATAAAAACCGACTTTCATATAGAGAACTACCTCCAGTCAGTC
CAAAACAAATCCTTCATAACACACACAACAAAACTCCGTATTGGAGCACA
CTGTCTTGAAATTGAAAAAGGCAGACACCGAAATGTCCCAGCCAATCAGA
GACTTTGTCCTACGTGTAAAGAAAATGTCGAAGACGAATACCACTTTTTA
ATGGAATGTCCAACATATAAAGATGAAAGAGTGAAGTTATTGCAGACAAT
CAAGTGTAAAACAAATGTAACATTACCTCAGTCGAAAACAGAGACGTTCC
GTGTACTTATGTCATGTCCTGAAACAATATCTGTATATCTAGGCCAATAT
ATTTTTACATCTATGCAAAAAAGAATCCGTGAAATAGCGATTTAGTTGTA
TAAGACATTCATCTCTTCGCCATGTTATTGTATAATTGACATATACGGCT
CCATATTGTATCACCTGTTGATATTTTCTACCTCTGATAATATTATATAG
ATAGTGCTTTCTTGTAGTTTGAAATGGAACATTGTACAGCCTAGAACCTA
ATCATTGTATAGCATTGAACCTTCCTGTAGCTTTTAGTAGTTTGATATAA
GTAGCCAGTAGCATTTTATCTTTGCCTTACATTGTACCTGTTACAATCGT
TGTGCAATAAACTTTGACTTGACTTGACTTGACTTTGC

Coding sequence (CDS) from alignment at Sc0000046:370791..371478-

>transcript:BL79079_cuf0 ID=transcript:BL79079_cuf0|Name=transcript:BL79079_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=393bp|location=Sequence derived from alignment at Sc0000046:370791..371478- (Branchiostoma lanceolatum)
TCAAAAATAAAAACCGACTTTCATATAGAGAACTACCTCCAGTCAGTCCA
AAACAAATCCTTCATAACACACACAACAAAACTCCGTATTGGAGCACACT
GTCTTGAAATTGAAAAAGGCAGACACCGAAATGTCCCAGCCAATCAGAGA
CTTTGTCCTACGTGTAAAGAAAATGTCGAAGACGAATACCACTTTTTAAT
GGAATGTCCAACATATAAAGATGAAAGAGTGAAGTTATTGCAGACAATCA
AGTGTAAAACAAATGTAACATTACCTCAGTCGAAAACAGAGACGTTCCGT
GTACTTATGTCATGTCCTGAAACAATATCTGTATATCTAGGCCAATATAT
TTTTACATCTATGCAAAAAAGAATCCGTGAAATAGCGATTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL79079gene:BL79079Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL79079_cuf0-E1BL79079_cuf0-E1-1564476830-216082Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL79079_cuf0transcript:BL79079_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000046genomeSc0000046:370791..371478 -
Properties
Property NameValue
Transcript idBL79079_cuf0
Biotypeprotein_coding