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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL79044_cuf2 >transcript:BL79044_cuf2-protein ID=transcript:BL79044_cuf2-protein|Name=transcript:BL79044_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=683bp
RSARKTGKRDFAWTRSGKKKRPLQHNSRDTASSKRPKRAVRPTVESSKEK
EKAADEILRQLFSGDENEESEDHIVQTETSAVLQMHSYSSSSQSKAPSTA
NSLSFQNEEALLPEELVLYGLLYVKGTAPNEGRKDVLPENCFTPGNSREF
VLVATALNRITGRSQYSADGINLYLSSVPQPKGGCNKVRWVHFQSEVQQF
VEQQGLNLRLLLSGADGVDMEGIRNAAAYIYEENNVQSGCPCHTNLPAVN
VENRGDRSQVNIENRGDRSQVNVENRGDRSQVNIENRGDRSQVNIENRGD
RSQVNIENRGDRSQVNIENRGDRSQVNIENRGDRSQVNIENRGDRSQVNI
ENRGDRSQVNIEXENRGDRRPRSYTNYLAPITLKSLEKVWQDELKDRWEN
WHLRLQTEAVFHFLTSFDSLSPVLQKSLHIYPDMRWTLKVRGVTVRAREL
SEELPHTVSNLLHFQTVLQFVQGGSVCKGCDYERHREVVESLPVGDLHEI
CAKVESLGQLKCIRSEQCMLFFPDELNNGKEEEDLRNICHMCRKVHVKLC
DKHADTQTHHKTNGTTSSTTSFENIPRETLEQQLRKTKKQLSKLKKKFAQ
QQDQNNSARETLERQLQETRQELTTLQNKFAKQQEVHKHNDQSHSERETL
ERQLKETRQELAALQKKCAKQQEMISTMTRTNL Run BLAST on NCBI mRNA from alignment at Sc0000036:50066..55531- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL79044_cuf2 ID=transcript:BL79044_cuf2|Name=transcript:BL79044_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=5466bp|location=Sequence derived from alignment at Sc0000036:50066..55531- (Branchiostoma lanceolatum)
TCGATCTGCCAGAAAAACAGGCAAAAGGTACACATTGTTTGACATTTTGT
CATAAGATGAGGACAAATGAGGGATAGAGTATACCCCAGATACCGTTAGA
GTAACTTGAAGCATTGTTTTTAGGCCGTTTATCACATAGTATGTCGATAG
ATAAAATTATGTTACCGAGGAAGGGGGAGGGGGGGCATAGTGAACTTGAT
CAAAATTATGGGCTATTCAAAAGAATGAATTAAAGAGGGGGGAAGGAAGA
GGTTCAAGTCACCAAGTGCTAAATACCTAGAGAGACAATTGACTCTTAAC
TGGACCAAGTGAAAGTTGGAACCACGTCTAGCGATACAATGGACGATACA
AAGGACAACAACAAGAGGTTAGATTTGGACAGGGGGGTGGGTCACAAAAA
TCTGGACTGGACGGGGGGGGGGTAATTAGGTAGAAAAATCTGGATTTGAC
AGGGGGTTGGGTAACCAAAATTTTGATGGGTAATGATTTGTTTAGGTTTT
TCATGAAAGGTACTAAAGAAAACCCTGTTTTAGTATAATAGTTTGTCATT
TTGCTTTGACACTCCCAGCATGTTGGAAATACAAAACCTTTTATACACTC
CACTGTATTGCAAAACATAATACGTAAATATATTTCTATCTCGTATGCAT
GAATTCTCACGCGTTTACAAACCTAGTGGATGATAATGATGATACTAATT
AACAAGCCTCTGGAAGGATTATGATGATATTTGGTAACCAGCGCTGACAC
AAATGTTAAGATTATAGGACTCTCAAACACATGACACATGTAACTGAGAA
AGAGCAATATCATAAGGTATCAATTATGCAAATTAATACCTGATTTGCAT
AATTAATGACAACATACTAACTATGATTCTATATTGGTAAATGACAAGGA
TTGTATTCTTGCAGCATTTGGAACTTGAGTAAATCTGTACATTATAAGAC
ATAAATCATGCAAATGAGGGCCTCATTTACATAATTTATGAGGAAATGAT
ACAATAGCCTTCTTTGCTAAGATAATGATGATTGTAAATGTGTTTCAGAA
CAACATGCCTCCATTTGCCCCATTCTGGAAAAGACTTGCCTTGGTCTGCC
CACAGCTTGTTGGACGGGAACTTTACTTGGATTTTCTAGGTGCGGGACCT
GAGCGCAAGTTTGTACTCTTGAGTGGAGGAAAGATTCTAGATTGTCCTTC
GGGGGTCACATTTTACAGCAGAAAGACGTGGTTCAAGCGCCTTGTAAAGG
CAGTCCCAATGCTGAAGAAGAAAAATGCTACTTTTCTTACTTACAACTCG
TACACACTTCCCGGAAGGTCTGGATGGAGAATGGACAAGGTCATGAAGTA
TCTAAAGATGAATGAGGGCAAAACAATCGATGTCGAGATGTTCTTTCGGC
CTCCTCCTAGTACGCAAGAACTCCAGCAATTAAGGATCGAAAGGAAAAAA
CAGCGATTTCCCGCCTTCTTGGAAGAACTTGTCGAAGCCTGCCCACAGCT
TGTAGGACGGGAACTATACTTGAATGTTGGTCATCCCAAATCCGAGCAAA
AGTTTGTGCTTTTGAGTGGAGGGAAGATTCAGGATTGTCGTATTGGGGCC
ATATTTGATGATAGACAGGCCTGGGTGAAGAACGTTGTTGACACAATCCC
TGAAATCAAGGAAGTCGTTAGTGTTGCTCGTACGTCTCTGTCAAAGTGCT
CATACACACTCCCAGGTAGGGGCGGATGGAAGATGATCAATGTCATGAAG
TACCTCAGAAACAATGGCGACAAAACAATTGATGCAGAGATGTTCTTTCA
GCCTCGTACACAAAAACTACAAAGGGTTGAAAAGAAGTACGCCAACATCT
GGGAAGAACTTGCCGACACCTGCCCACAGCTTGTTGGACGAAAACTCTTT
TTGAATATCAGACGTCCAGAATTTGAGCAAAAGTTTGTGCTTTTGAGTGG
AGGAAAGATTCAAGATTGTCGCACTGGGGTCATATTCGACGGCAGACAGG
ATTGGCTGAAGAATATCGTAGACACAGTCCCTGAAATCAAGGACATCATC
GATTTAAGCAAGATGTCACTGTACAAGTTCTCGTACACACTTCCAGGGAG
GTCTGGATGGCCAATAGAATGTGTCATGAAGCATCTCAGGAAGGATAGGA
GTAAAGCCATCAATGTTGACATGTTCTTTCAGGATTTTGCGTGGACAAGG
AGTGGTAAGAAGAAACGTCCGCTGCAGCACAACAGCCGTGACACTGCATC
GTCGAAGCGACCAAAACGTGCCGTCCGCCCGACTGTTGAGTCATCGAAGG
AGAAAGAGAAAGCAGCCGATGAGATTCTAAGACAACTGTTCAGCGGAGAC
GAGAATGAGGAATCTGAAGATCATATCGTCCAAACAGAAACTTCTGCTGT
GCTACAGATGCATTCTTACTCTAGCAGTTCTCAGTCAAAAGCTCCTAGCA
CTGCCAACAGTCTTTCATTCCAAAATGAGGAGGCGCTTTTGCCAGAGGAG
CTGGTTTTGTACGGTTTGTTGTACGTAAAGGGAACTGCTCCAAATGAGGG
GAGGAAAGACGTACTACCAGAGAACTGTTTCACACCAGGGAACAGCAGAG
AATTCGTCTTGGTAGCCACAGCCCTGAACCGCATCACTGGCAGAAGTCAG
TACAGCGCGGACGGAATCAACCTCTACCTCTCGTCCGTGCCGCAACCGAA
GGGCGGGTGTAATAAGGTCAGATGGGTACACTTTCAGTCTGAAGTACAGC
AGTTTGTGGAACAACAGGGTCTGAATCTCAGGCTTCTGTTGAGCGGAGCA
GACGGTGTTGATATGGAAGGCATACGTAATGCCGCTGCATATATATATGA
AGAAAACAATGTGCAGAGCGGATGCCCCTGTCATACAAACCTTCCGGCAG
TTAACGTTGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAAAATAGA
GGGGACAGAAGTCAGGTTAACGTTGAAAATAGAGGGGACAGAAGTCAGGT
TAACATTGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAAAATAGAG
GGGACAGAAGTCAGGTTAACATTGAAAATAGAGGGGACAGAAGTCAGGTT
AACATTGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAAAATAGAGG
GGACAGAAGTCAGGTTAACATTGAAAATAGAGGGGACAGAAGTCAGGTTA
ACATTGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAANTTGAAAAT
AGAGGGGACAGAAGGCCTCGCAGTTATACAAACTATCTAGCACCCATCAC
ACTAAAGTCTCTGGAAAAAGTGTGGCAAGACGAGCTAAAGGACCGATGGG
AGAACTGGCACCTGAGATTGCAGACAGAGGCAGTTTTCCACTTTCTTACC
TCCTTTGACTCGTTGTCACCAGTTCTTCAGAAATCGTTGCACATCTATCC
GGACATGAGGTGGACGCTGAAGGTCCGAGGGGTGACCGTACGCGCACGAG
AACTTTCGGAGGAGTTGCCACACACTGTTTCTAACCTCCTACATTTTCAG
ACAGTCCTTCAGTTTGTTCAAGGCGGCTCTGTCTGTAAGGGATGCGACTA
TGAGAGGCATAGGGAGGTAGTGGAAAGTCTGCCTGTTGGTGATCTACATG
AAATATGTGCCAAAGTGGAAAGTCTTGGTCAGCTGAAGTGCATACGAAGT
GAGCAGTGTATGTTGTTCTTCCCCGATGAGCTGAACAATGGAAAGGAGGA
AGAGGATCTCAGGAACATTTGCCACATGTGTAGGAAGGTACATGTCAAAC
TATGCGACAAACATGCGGACACACAAACACATCATAAAACCAATGGTACC
ACAAGTTCGACCACAAGCTTCGAGAACATTCCACGGGAAACACTTGAGCA
GCAGTTGAGGAAGACTAAGAAGCAGCTATCAAAATTAAAGAAGAAGTTCG
CACAACAACAAGACCAAAATAATTCTGCAAGGGAGACACTAGAAAGACAG
CTACAAGAGACAAGGCAAGAGCTGACAACGTTACAAAACAAGTTTGCAAA
ACAACAAGAAGTACACAAACACAATGACCAAAGCCATTCTGAAAGGGAGA
CTCTGGAAAGACAACTGAAAGAAACAAGGCAAGAGCTAGCAGCATTGCAA
AAGAAATGTGCGAAGCAGCAAGAGATGATTAGCACAATGACCAGAACAAA
CCTGTAAGGGAGACACTACTAGTAGAAAACCAGCTCCAAGAAACAAGTCA
AGACTAGCATCGTAAAAATAAAGTTTGCAAAACATCAAGAACTTGAACTT
CAAGAAGACCAAAACTGACAACAGCAGTACAGTAGGAGATACCGAACAGT
CGTTGTGTAGAAAGAGCACATACTTTTCCACCTCCACTAATACAGACAAG
AACTCATACTAGTCTGACACATCAAAGCCTCAGTAAACTGGACTAGAAGT
TAGTAGGACATAAGAACTACCGGTATTACTGATTAGTAAATCTATCACAA
AAGCAAAGCATCCTCGAGACCTGTGCTTAATTAATGAGGCCAACGTATGC
CCTGAGCCTTAGTTGGTAGGCTGGGTAGAATATACATATATACCCAAATT
TCTTCAACCAAAGCCGTGATTTCTTATAGCTTAGGCCACACCAATTTAAT
CTCTTGGTTAACAGATTTTTCTTTTTTTTAATTTTAGCAAAAAAAAAATC
ATTAAAACAGAAGGCTGGGGTGAAAACTTGCACCTGACCTTGTTCACACC
CTGAAACTGTGTGCACCAAAGTGCAGACTTTCCTCTGAGATTCTGTTTTC
ATGTTGATTTTGGAATTTAGCGGGTTTTTAAAAATTCCAATAACCAAGAA
ATTGAATTGGTGTGGCCTTAGTCAATAAATGGTGGTAGCAGTGAAGACGT
CCAACCCCACAGATGTATGTATATACAAGGTCAGAGATGTCTCCTAGAGT
AATAGTATGTAAAACGATGATTTAGAGTTGACCAGGCTGTGCCTTAGGAG
GTGGAAGACCAAGTCACTTAGTCTAGCAGATCTACCCCAAAACAGACATG
TTCGTTCTTTGAAATAGAAGAAGGGAATTTTCTTGATAGTGAAGAAGACA
CAATTGTTACGGACACTGTTTACTGTCATCAAATTGTTCTTAAAACAATG
CACAGGTATTCATCTTTTGTCTTTGAAGTTCATAGAGAATTACAATTTTT
GGCTTCTTTTCTGTTACATTTGAAGCAGGAGTTTGTTATAGGAAACAATT
GTGTTTTATACAAAATATTTCAGTGTTCTCTGTTGCAACCAAGTATATAT
GACACATATACACTGTACTTGAAACGTTTTTTTATTCATAGGTAAACTTC
AGAATTCGTGTTTAAACGTGGGAAAAGAATGTAAGATACAGATGTATACT
TCCACAGGTACATTGTAATAGTCCATAATTCCAGACTATTAAAGTGTTAC
CTATCCTACACCTGGG Coding sequence (CDS) from alignment at Sc0000036:50066..55531- >transcript:BL79044_cuf2 ID=transcript:BL79044_cuf2|Name=transcript:BL79044_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4104bp|location=Sequence derived from alignment at Sc0000036:50066..55531- (Branchiostoma lanceolatum)
CGATCTGCCAGAAAAACAGGCAAAAGGGATTTTGCGTGGACAAGGAGTGG
TAAGAAGAAACGTCCGCTGCAGCACAACAGCCGTGACACTGCATCGTCGA
AGCGACCAAAACGTGCCGTCCGCCCGACTGTTGAGTCATCGAAGGAGAAA
GAGAAAGCAGCCGATGAGATTCTAAGACAACTGTTCAGCGGAGACGAGAA
TGAGGAATCTGAAGATCATATCGTCCAAACAGAAACTTCTGCTGTGCTAC
AGATGCATTCTTACTCTAGCAGTTCTCAGTCAAAAGCTCCTAGCACTGCC
AACAGTCTTTCATTCCAAAATGAGGAGGCGCTTTTGCCAGAGGAGCTGGT
TTTGTACGGTTTGTTGTACGTAAAGGGAACTGCTCCAAATGAGGGGAGGA
AAGACGTACTACCAGAGAACTGTTTCACACCAGGGAACAGCAGAGAATTC
GTCTTGGTAGCCACAGCCCTGAACCGCATCACTGGCAGAAGTCAGTACAG
CGCGGACGGAATCAACCTCTACCTCTCGTCCGTGCCGCAACCGAAGGGCG
GGTGTAATAAGGTCAGATGGGTACACTTTCAGTCTGAAGTACAGCAGTTT
GTGGAACAACAGGGTCTGAATCTCAGGCTTCTGTTGAGCGGAGCAGACGG
TGTTGATATGGAAGGCATACGTAATGCCGCTGCATATATATATGAAGAAA
ACAATGTGCAGAGCGGATGCCCCTGTCATACAAACCTTCCGGCAGTTAAC
GTTGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAAAATAGAGGGGA
CAGAAGTCAGGTTAACGTTGAAAATAGAGGGGACAGAAGTCAGGTTAACA
TTGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAAAATAGAGGGGAC
AGAAGTCAGGTTAACATTGAAAATAGAGGGGACAGAAGTCAGGTTAACAT
TGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAAAATAGAGGGGACA
GAAGTCAGGTTAACATTGAAAATAGAGGGGACAGAAGTCAGGTTAACATT
GAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAANTTGAAAATAGAGG
GGACAGAAGGCCTCGCAGTTATACAAACTATCTAGCACCCATCACACTAA
AGTCTCTGGAAAAAGTGTGGCAAGACGAGCTAAAGGACCGATGGGAGAAC
TGGCACCTGAGATTGCAGACAGAGGCAGTTTTCCACTTTCTTACCTCCTT
TGACTCGTTGTCACCAGTTCTTCAGAAATCGTTGCACATCTATCCGGACA
TGAGGTGGACGCTGAAGGTCCGAGGGGTGACCGTACGCGCACGAGAACTT
TCGGAGGAGTTGCCACACACTGTTTCTAACCTCCTACATTTTCAGACAGT
CCTTCAGTTTGTTCAAGGCGGCTCTGTCTGTAAGGGATGCGACTATGAGA
GGCATAGGGAGGTAGTGGAAAGTCTGCCTGTTGGTGATCTACATGAAATA
TGTGCCAAAGTGGAAAGTCTTGGTCAGCTGAAGTGCATACGAAGTGAGCA
GTGTATGTTGTTCTTCCCCGATGAGCTGAACAATGGAAAGGAGGAAGAGG
ATCTCAGGAACATTTGCCACATGTGTAGGAAGGTACATGTCAAACTATGC
GACAAACATGCGGACACACAAACACATCATAAAACCAATGGTACCACAAG
TTCGACCACAAGCTTCGAGAACATTCCACGGGAAACACTTGAGCAGCAGT
TGAGGAAGACTAAGAAGCAGCTATCAAAATTAAAGAAGAAGTTCGCACAA
CAACAAGACCAAAATAATTCTGCAAGGGAGACACTAGAAAGACAGCTACA
AGAGACAAGGCAAGAGCTGACAACGTTACAAAACAAGTTTGCAAAACAAC
AAGAAGTACACAAACACAATGACCAAAGCCATTCTGAAAGGGAGACTCTG
GAAAGACAACTGAAAGAAACAAGGCAAGAGCTAGCAGCATTGCAAAAGAA
ATGTGCGAAGCAGCAAGAGATGATTAGCACAATGACCAGAACAAACCTGT
AACGATCTGCCAGAAAAACAGGCAAAAGGGATTTTGCGTGGACAAGGAGT
GGTAAGAAGAAACGTCCGCTGCAGCACAACAGCCGTGACACTGCATCGTC
GAAGCGACCAAAACGTGCCGTCCGCCCGACTGTTGAGTCATCGAAGGAGA
AAGAGAAAGCAGCCGATGAGATTCTAAGACAACTGTTCAGCGGAGACGAG
AATGAGGAATCTGAAGATCATATCGTCCAAACAGAAACTTCTGCTGTGCT
ACAGATGCATTCTTACTCTAGCAGTTCTCAGTCAAAAGCTCCTAGCACTG
CCAACAGTCTTTCATTCCAAAATGAGGAGGCGCTTTTGCCAGAGGAGCTG
GTTTTGTACGGTTTGTTGTACGTAAAGGGAACTGCTCCAAATGAGGGGAG
GAAAGACGTACTACCAGAGAACTGTTTCACACCAGGGAACAGCAGAGAAT
TCGTCTTGGTAGCCACAGCCCTGAACCGCATCACTGGCAGAAGTCAGTAC
AGCGCGGACGGAATCAACCTCTACCTCTCGTCCGTGCCGCAACCGAAGGG
CGGGTGTAATAAGGTCAGATGGGTACACTTTCAGTCTGAAGTACAGCAGT
TTGTGGAACAACAGGGTCTGAATCTCAGGCTTCTGTTGAGCGGAGCAGAC
GGTGTTGATATGGAAGGCATACGTAATGCCGCTGCATATATATATGAAGA
AAACAATGTGCAGAGCGGATGCCCCTGTCATACAAACCTTCCGGCAGTTA
ACGTTGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAAAATAGAGGG
GACAGAAGTCAGGTTAACGTTGAAAATAGAGGGGACAGAAGTCAGGTTAA
CATTGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAAAATAGAGGGG
ACAGAAGTCAGGTTAACATTGAAAATAGAGGGGACAGAAGTCAGGTTAAC
ATTGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAAAATAGAGGGGA
CAGAAGTCAGGTTAACATTGAAAATAGAGGGGACAGAAGTCAGGTTAACA
TTGAAAATAGAGGGGACAGAAGTCAGGTTAACATTGAANTTGAAAATAGA
GGGGACAGAAGGCCTCGCAGTTATACAAACTATCTAGCACCCATCACACT
AAAGTCTCTGGAAAAAGTGTGGCAAGACGAGCTAAAGGACCGATGGGAGA
ACTGGCACCTGAGATTGCAGACAGAGGCAGTTTTCCACTTTCTTACCTCC
TTTGACTCGTTGTCACCAGTTCTTCAGAAATCGTTGCACATCTATCCGGA
CATGAGGTGGACGCTGAAGGTCCGAGGGGTGACCGTACGCGCACGAGAAC
TTTCGGAGGAGTTGCCACACACTGTTTCTAACCTCCTACATTTTCAGACA
GTCCTTCAGTTTGTTCAAGGCGGCTCTGTCTGTAAGGGATGCGACTATGA
GAGGCATAGGGAGGTAGTGGAAAGTCTGCCTGTTGGTGATCTACATGAAA
TATGTGCCAAAGTGGAAAGTCTTGGTCAGCTGAAGTGCATACGAAGTGAG
CAGTGTATGTTGTTCTTCCCCGATGAGCTGAACAATGGAAAGGAGGAAGA
GGATCTCAGGAACATTTGCCACATGTGTAGGAAGGTACATGTCAAACTAT
GCGACAAACATGCGGACACACAAACACATCATAAAACCAATGGTACCACA
AGTTCGACCACAAGCTTCGAGAACATTCCACGGGAAACACTTGAGCAGCA
GTTGAGGAAGACTAAGAAGCAGCTATCAAAATTAAAGAAGAAGTTCGCAC
AACAACAAGACCAAAATAATTCTGCAAGGGAGACACTAGAAAGACAGCTA
CAAGAGACAAGGCAAGAGCTGACAACGTTACAAAACAAGTTTGCAAAACA
ACAAGAAGTACACAAACACAATGACCAAAGCCATTCTGAAAGGGAGACTC
TGGAAAGACAACTGAAAGAAACAAGGCAAGAGCTAGCAGCATTGCAAAAG
AAATGTGCGAAGCAGCAAGAGATGATTAGCACAATGACCAGAACAAACCT
GTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000036 | genome | Sc0000036:50066..55531 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL79044_cuf2 |
| Biotype | protein_coding |
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