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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78955_cuf0 >transcript:BL78955_cuf0-protein ID=transcript:BL78955_cuf0-protein|Name=transcript:BL78955_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=361bp
MNDMADSKSGCKEQERTSEKPHVCGECGYRAAYMCTLSQHMRTHTGEKPY
MCGECGYRTARKYDLSVHMRTHTGEKPYKCDQCDYSAAIKTTLDKHQLKH
TGEKPYMCGECGYRTTQRTHLSQHMITHTGEKPYKCEECGYRTARKYNLS
IHMRTHTEEKPXTHTEEKPYKCDQCDYSAAKKSSLDQHRVKHTGEKPYIC
GECGYKTYDKCHLSRHMRTHTGEKPYECDQCDYSATQKSDLNRHQLQRSG
EKPFMCGECEYRTAKKYNLSVHMRTHTGEKPFKCDQCDYSAALKTTLDKH
QLKHTGEKPFMCGECGYRTTQRSALSQHMRTHTGEKPYKCDQCDYSAALK
STLDQHRLKHT Run BLAST on NCBI mRNA from alignment at xpSc0040235:509..4962+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78955_cuf0 ID=transcript:BL78955_cuf0|Name=transcript:BL78955_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4454bp|location=Sequence derived from alignment at xpSc0040235:509..4962+ (Branchiostoma lanceolatum)
CAGCTACTACTGCAACAATATTTCAGTGATAGTAAATTAGGTAACGTCTG
ACCGTTTCCAAAATCTATCATGTTGCTTAATAGACTGTAACCTTAAATGA
CGTTAAATTGTATGATTCAATAACACTTATAAGATCAAATAGGTAGTTGC
CACAATACTGATTGTGATTGATTTGTCAAATGATAATCTTTCAGATAAGT
GATGAACGATATGGCTGATTCCAAATCTGGATGTAAGGAGCAAGAGCGTA
CCAGTGAGAAACCCCACGTGTGTGGGGAGTGTGGATACAGGGCAGCTTAT
ATGTGTACCTTATCCCAACATATGAGAACTCATACAGGAGAGAAACCCTA
CATGTGTGGTGAGTGTGGCTACAGAACCGCTAGGAAGTATGACTTATCCG
TACACATGAGAACTCATACAGGAGAGAAACCCTACAAGTGTGACCAGTGT
GACTATTCTGCCGCCATAAAAACCACTTTGGACAAACATCAGTTAAAGCA
CACTGGTGAGAAACCCTACATGTGTGGGGAGTGTGGGTACAGGACAACAC
AGAGGACTCACTTATCCCAACACATGATAACTCATACAGGAGAGAAACCC
TACAAGTGTGAGGAGTGTGGGTACAGAACTGCTAGGAAGTATAATTTATC
CATACACATGAGAACTCATACTGAAGAGAAACCCTNAACTCATACTGAAG
AAAAACCATACAAGTGTGACCAGTGTGACTATTCTGCAGCCAAGAAATCG
TCCCTGGACCAACATCGAGTAAAACACACTGGTGAGAAACCCTACATATG
TGGGGAGTGTGGGTACAAAACTTATGATAAGTGTCACTTATCCAGACATA
TGAGAACTCATACGGGGGAGAAACCCTACGAGTGTGACCAGTGTGACTAT
TCTGCTACCCAGAAATCAGATTTGAACCGCCATCAATTGCAACGCTCTGG
TGAGAAACCCTTCATGTGTGGGGAGTGTGAGTACAGGACTGCTAAGAAGT
ACAACTTATCCGTACACATGAGAACTCATACAGGAGAGAAACCCTTCAAG
TGTGACCAGTGTGACTATTCTGCAGCCCTTAAAACCACTTTGGACAAACA
TCAGTTAAAGCACACTGGTGAGAAACCCTTCATGTGTGGTGAGTGTGGGT
ACAGGACAACTCAGAGGTCTGCCTTATCCCAACATATGAGAACTCATACA
GGAGAGAAGCCCTACAAGTGTGACCAGTGTGACTATTCTGCAGCCCTGAA
GTCCACTTTGGACCAACATCGATTAAAACACACTTGAGAGAAACCCTTCA
AGTGTGACCAGTGTGACTATTCTGCAGTCAAGATATCGACGTTGGACCAA
CATCAATTAAAGCACACTGGTGAGAAACCCTTCATGTGTGGGGAGTGTGG
GTACAGGACAACCCAGAGGTCTGCCTTATCCCGACATATGAAAACTCATA
CAGGAGAGAAGCCATGCATGTGTGGGGAGTGTGGGTATAGAACTGCTAAG
AAGGCGAACTTATCCCGATATATGAGAACTCATACTGAGGAGAAACCCTA
CATGTGTGAGGAGTGTGGGTACAGGGCTGCACACAAGGCTACCTTATCCA
CACACATGAGAACTCATATGGGTGGAAAACACAAGTGTGACCAGTGTGAC
TATTCTACTGCCAAAAAATGGGTTTTTGACTGTCATCGAGTAAAACTCAA
TCATCTCATGACAAGCCCTACATGTGTTGGGAGTGTGAGTGCAGGACAGC
TTTGAGGTCTGAGTTATCTCATGGGAGGAGAACGAGGAAAACCCTACAAG
TAAGTGTGACCAGTGCGAACTTTTTGGAGAAAAAAAGGCATTTGACTCCC
ATCTGTTTAACACATTGGTGATAGCCACATGTGTGAGAGTAGTTAGGCCA
AATTGGTATCACGTGTTTTTGTACCGTATACATTTATGTTAACTTACAAT
CCCTGCAATGTGTAACTGCTGACTGTCTTGCAGATTTGAAGAAGTCAGCT
TGGGATCAATGTCATACAAAATACTCTGTGGTGGGAACCTTAACAAATGT
GACCTTTTCCATTAGAGATGGGTATAGATGGACCTTGTACCAAAAACCAG
ACAGTGTGTGGTTATTTTGGAAATTTTCTGCAGAAATCAGGACAAAAGGT
CCTACTGTATGCTACCGGAGACAGGCTTACAGTTCGATTTAAGGTATTTC
TTACTTACACACTTCAGGAGACAGGCTTAAAGTTCGATAAGGTATGTTCT
TACTTACAAACTACAGGAGACAGGCTTACAGTTCGATAAGGTATGTTCTA
ACTTACAAACTACAGGAGATAGGCTTACAGTTCGATTTAAGGTATTTCTA
GCTTACAAACTACATTAGACAGGCCTACAGTTCGATAAGGTATGTTCTAA
CTTACAAACTACAGGAGACAGGCTTACAGTTCAATAAGGTATTTCTAGCT
TACAAACTACATTAGACAGGCCTACAGTTCGGTAAGGTATGTCTTACTTA
CAAACTACTTTAGACAGGCCTACAGTTCGATAAGGTATTTCTAGCTTACA
AACTACATTAGACAGGCCTACAGTTCGGTAAGGTATGTCTTACTTACAAA
CTACATNGACATATGAGAACTCATACGGGGGAGAAACCCTACAAGTGTGA
CCAGTGTGACTATTCTGCTACCCAGAAATCAGATTTGAACCGCCATCAAT
TGCAACGCTCTGGTGAGAAACCCTTCATGTGTGGGGAGTGTGAGTACAGG
ACTGCTAAGAAGTACAACTTATCCGTACACATGAGAACTCATACAGGAGA
GAAACCCTTCAAGTGTGACCAGTGTGACTATTCTGCAGCCCTTAAAACCA
CTTTGGACAAACATCAGTTAAAGCACACTGGTGAGAAACCCTTCATGTGT
GGGGAGTGTGGGTACAGGACAACTCAGAGGTCTGCCTTATCCCAACATAT
GAGAACTCATACAGGAGAGAAGCCCTACAAGTGTGACCAGTGTGACTATT
CTGCAGCCCTGAAGTCCACTTTGGACCAACATCGATTAAAACACACTTGA
GAGAAACCCTTCAAGTGTGACCAGTGTGACTATTCTGCAGTCAAGATATC
GACGTTGGACCAACATCAATTAAAGCACACTGGTGAGAAACCCTTCATGT
GTGGGGAGTGTGGGTACAGGACAACCCAGAGGTCTGCCTTATCCCGACAT
ATGAAAACTCATACAGGAGAGAAGCCATGCATGTGTGGGGAGTGTGGGTA
TAGAACTGCTAAGAAGGCGAACTTATCCCGATATATGAGAACTCATACTG
AGGAGAAACCCTACATGTGTGAGGAGTGTGGGTACAGGGCTGCACACAAG
GCTACCTTATCCACACACATGAGAACTCATATGGGTGGAAAACACAAGTG
TGACCAGTGTGACTATTCTACTGCCAAAAAATGGGGTTTAGACTGTCATC
GAGTAAAACTCAATCATCTCATGACAAGCCCTACATGTGTTGGGAGTGTG
AGTGCAGGACAGCTTTGAGGTCTGAGTTATCTCATGGGAGGAGAACGAGG
AAAACCCTACAAGTAAGTGTGACCAGTGCGAACTTTTTGGAGAAAAAAAG
GCATTTGACTCCCATCTGTTTAACACATTGGTGATAGCCACATGTGTGAG
AGTAGTTAGGCCAAATTGGTATCACGTGTTTTTGTACCGTATACATTTAT
GTTAACTTACAATCCCTGCAATGTGTAACTGCTGACTGTCTTGCAGATTT
GAAGAAGTCAGCTTGGGATCAATGTCATACAAAATACTCTGTGGTGGGAA
CCTTAACAAATGTGACCTTTTCCATTAGAGATGGGTATAGATGGACCTTG
TACCAAAAACCAGACAGTGTGTGGTTATTTTGGAAATTTTCTGCAGAAAT
CAGGACAAAAGGTCCTACTGTATGCTACCGGAGACAGGCTTACAGTTCGA
TTTAAGGTATTTCTTACTTACACACTTCAGGAGACAGGCTTAAAGTTCGA
TAAGGTATGTTCTTACTTACAAACTACAGGAGACAGGCTTACAGTTCGAT
AAGGTATGTTCTAACTTACAAACTACAGGAGATAGGCTTACAGTTCGATT
TAAGGTATTTCTAGCTTACAAACTACATTAGACAGGCCTACAGTTCGATA
AGGTATGTTCTAACTTACAAACTACAGGAGACAGGCTTACAGTTCAATAA
GGTATTTCTAGCTTACAAACTACATTAGACAGGCCTACAGTTCGGTAAGG
TATGTCTTACTTACAAACTACTTTAGACAGGCCTACAGTTCGATAAGGTA
TTTCTAGCTTACAAACTACATTAGACAGGCCTACAGTTCGGTAAGGTATG
TCTTACTTACAAACTACATCAGACAGGCTTACAGTTCGATAAGGTATGTT
CTAACTTACAAACTACATTAGACAGGCCTACAGTTCGATAAGGTACGAGC
ATCT Coding sequence (CDS) from alignment at xpSc0040235:509..4962+ >transcript:BL78955_cuf0 ID=transcript:BL78955_cuf0|Name=transcript:BL78955_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1086bp|location=Sequence derived from alignment at xpSc0040235:509..4962+ (Branchiostoma lanceolatum)
ATGAACGATATGGCTGATTCCAAATCTGGATGTAAGGAGCAAGAGCGTAC
CAGTGAGAAACCCCACGTGTGTGGGGAGTGTGGATACAGGGCAGCTTATA
TGTGTACCTTATCCCAACATATGAGAACTCATACAGGAGAGAAACCCTAC
ATGTGTGGTGAGTGTGGCTACAGAACCGCTAGGAAGTATGACTTATCCGT
ACACATGAGAACTCATACAGGAGAGAAACCCTACAAGTGTGACCAGTGTG
ACTATTCTGCCGCCATAAAAACCACTTTGGACAAACATCAGTTAAAGCAC
ACTGGTGAGAAACCCTACATGTGTGGGGAGTGTGGGTACAGGACAACACA
GAGGACTCACTTATCCCAACACATGATAACTCATACAGGAGAGAAACCCT
ACAAGTGTGAGGAGTGTGGGTACAGAACTGCTAGGAAGTATAATTTATCC
ATACACATGAGAACTCATACTGAAGAGAAACCCTNAACTCATACTGAAGA
AAAACCATACAAGTGTGACCAGTGTGACTATTCTGCAGCCAAGAAATCGT
CCCTGGACCAACATCGAGTAAAACACACTGGTGAGAAACCCTACATATGT
GGGGAGTGTGGGTACAAAACTTATGATAAGTGTCACTTATCCAGACATAT
GAGAACTCATACGGGGGAGAAACCCTACGAGTGTGACCAGTGTGACTATT
CTGCTACCCAGAAATCAGATTTGAACCGCCATCAATTGCAACGCTCTGGT
GAGAAACCCTTCATGTGTGGGGAGTGTGAGTACAGGACTGCTAAGAAGTA
CAACTTATCCGTACACATGAGAACTCATACAGGAGAGAAACCCTTCAAGT
GTGACCAGTGTGACTATTCTGCAGCCCTTAAAACCACTTTGGACAAACAT
CAGTTAAAGCACACTGGTGAGAAACCCTTCATGTGTGGTGAGTGTGGGTA
CAGGACAACTCAGAGGTCTGCCTTATCCCAACATATGAGAACTCATACAG
GAGAGAAGCCCTACAAGTGTGACCAGTGTGACTATTCTGCAGCCCTGAAG
TCCACTTTGGACCAACATCGATTAAAACACACTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| xpSc0040235 | genome | xpSc0040235:509..4962 + |
Properties
| Property Name | Value |
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| Transcript id | BL78955_cuf0 |
| Biotype | protein_coding |
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