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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78932_cuf0 >transcript:BL78932_cuf0-protein ID=transcript:BL78932_cuf0-protein|Name=transcript:BL78932_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=171bp
MLLWTHLAAYLPVCMALMTSGAYAKPRGNLIRSTSKHPSERGYRSILQFG
NMISCATQRDPSDYSGYGCYCGYGGGGTPMDGVDRCCQQHDQCYGMVQDR
CGYYYAYLFPYSSSCKRRRITCHRPWWSWSECPIMLCECDKMAAYCFAWY
RDRYNPDNYGRCDSPSASPTG Run BLAST on NCBI mRNA from alignment at Sc0000022:1071586..1074974- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78932_cuf0 ID=transcript:BL78932_cuf0|Name=transcript:BL78932_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3389bp|location=Sequence derived from alignment at Sc0000022:1071586..1074974- (Branchiostoma lanceolatum)
AAATTATCATTTTTCAAAGGTTCCAAGTAACATCTCTTCAACTTAGAAAG
TATGTAAAAGCCCCAAACGTCTATCTGCTTGGAGATTTGCCTATCGATAT
TTTATGGGTCGTGGGAAAGATCATTGTATTTTGTATACACAACGACTTTC
TTACACAACAGAGAAAAACAAATGGTCCACACTATACGAGTTTTCGACGC
TGAGGCGACCGCGAAAAGACCAAGATTTGTTTGATATGGTTGAACGGAGG
TTACAGAAGATCCTTCGAAGTTCCAGTTTCTGAAGACTAAGGACTCCTCC
AAGATGTTGCTCTGGACGCATCTTGCGGCGTACCTACCAGTATGCATGGC
GCTGATGACCTCAGGTATTCGATCGGCCTAAACATACATAACTGATGATG
ATGAAACCAGAAGAAAGATGCCCTTTAGGTCTCATGATAAGGGCAAGGGA
TGAAACAAGTTACCACTTAACCGGTGCGTTAGAATGGACTAGCTGTCGGG
ACCACCTGATCATTGTAGCTACTTGTTGGTGGTACCTTAGATTATTTTCC
CCACTGACCCAAGCATGAAGTATTCGCTCCATAGTGGCCACCTATATACT
GTGACCGTTTTCCTTAAACATCTTGAGTGGTTATCACATAGACGTTTGTG
GGAAAGCACTTCTAATCATTATGATACATTCAAGGCGGGACAGGTAAAAC
AGAAAGTTAAGATCATTGGCCATCTTTGTAAATACTACATTTGCACAGTT
GTGTTTATTTTCGTGTTTTTAAAACCAGACCTATTCTCTGTTGTATTGAC
TGTGCGTCATGGTAGGGGCGTACGCTAAACCCCGTGGGAATCTGATAAGA
TCCACAAGCAAACATCCGAGCGAGAGAGGGTACCGAAGTATTTTGCAGTT
CGGCAATATGATTAGCTGCGCCACCCAGCGGGACCCGTCAGATTACAGCG
GATATGGTTGCTATTGCGGATACGGAGGTGGTGGAACGCCCATGGACGGC
GTAGACAGGTAGGTGAAGTTTCCGTTATTACCTTAGCCAAAAAAGTTATG
TTTTCGGTATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGCATGTGGTTGAACAGCATAACTCGAGAAGGCCTGGATGGATT
ATATTGATATTTGGCATGTGGGTAGGTCTTGATGATATCTGGAAATGATT
TAGCTCTTAGCGGCCTGTTACGGTACTGCAGCGGCCAACGTCCGTTTCTG
ATATCTCGTGTTCTGGACATGCCATTGCAATGTTTTGTAAGTGGTAGATA
CATGTAGCTCCTGGGACCGAGAGTAAGTGGTGTAGGTTTGGCCACTATAG
TCCTGGAAGACCTGGCCATTGTGGACACTATTGGATGATTATATTTCACA
TCGAACCAATCACTAAAGTTCCGTCTAATGCTAGGGTCACATTTCCTACC
AGGGGCCCGGCCGGGCAGCTTGTGGGAACGAAAACTATGATATAAGGGAG
AAGAAAACACACAGAATTTAAAATAAAACAACTCCTTACCGTACGTTATG
TATATTATTGATGTGCATTTTGTATTCTTTGTTTTCTCAAATAGCCCGGT
CGGACCCCGGCTTGGAAATGTAACCGTACCATAAGGTGGTCACCTGTCAA
TCGTGATCGTTTGCTTCAAGTCTCTGGAGTGGTCACTATAAAACCTATGG
ATAGGGCTAAGGTTGGGATGTATTTCCTTAGGCCCCCATTCCACTAGACA
GTTTACCCCTTGATTTCATAATTGGAATATCATGCGAAATGTAGAAATAT
GACCACAAAACACACAAAGCGTAAAAAGAATCTTCTTTATCTTTGAAATT
CTTTGAGCGCTCTGTCAAATTTTAGGTCGCAGCTTAACCTCCTTGGTCAC
AGTGAAGTCGCAGCGAGGCCGCCGTCCTTGTTGAATGGTGGCATTATACA
TGTCCTTTACTGCATTTTTAGATGGTTGGAAATGCAATTTTGTCCGCTAC
AGGTGCTGTCAGCAGCATGACCAGTGCTACGGGATGGTACAAGACAGATG
TGGGTACTATTACGCGTACCTGTTCCCGTATAGCAGCTCTTGCAAAAGGA
GGAGGATAACTTGTCGTGAGTGCAACAGCCTTTGCTTTTATTTACAACAG
TACTGCAGTGTCATTTCAGGTCACCACTAGTGGGTCAATATCGGACCACT
AGCGGGTCAATATCGGACCACTAGTGGGTCAATATCGGACCACTAGTGGA
ACAATATCGGACCACTAGCGGGTCAATATCGGACCACTAGTGGGTCAATA
TCGGACCACTAGTGGGTCAATATCGGACCACTAGCGGGTCAATATCGGAC
CACTAGTGGGTCAATATCGGACCACAAGTGGGCCAATATATCGGACCACT
AGTGGGTCAATATCGGACCACTAGTGGAACAATATCGGACCACTAGTGGA
ACAATATCGGATCAGTACTATAGTGGGTCAATATCGGACCACTAGTGGGT
CAATATAGGAATTTTAGATTGCAAGCATGTAAATGTACATAAGGAACAAA
TAATACACAATGCTAAACTCTCTTCCAACACTAAGGTATACATAGATCAA
ATTTTCGACGATCAATAATGATCAATCACTTACGTAACAACGTAAACTCG
CAAAAGTTACAGACACGTGACCCTATTGACACGTGTCTTTGCGGATACGT
GACGTCAGCAATTGGTCAAACGTGCAAGGAAGTTTATAACGACCGCCGTC
TCGGTTGAGTGATAGCTGGAGTGCCCTGATGTATATGGTCTCCTTTATAC
CTCACATAAAGTAGTGCTATCTATATGAAAGNTCACATAAATTAGTGCTA
TCTATATGAAAGTTATCGTCATCAAGAAAGGTACGGTGATTTTCTTCTCT
CATTCAACTTGCAGACCGGCCTTGGTGGTCATGGTCGGAATGCCCCATCA
TGCTTTGCGAGTGTGACAAGATGGCCGCCTACTGTTTCGCCTGGTATCGG
GATCGCTACAACCCGGACAACTACGGGAGATGCGACTCACCATCGGCCTC
GCCGACTGGATAAAGCCGAGACAAGATCTCAGATGTGCTGAGATTTTTGT
TTTACGGGGTTTTCTGCTTTGCAGCCATCATGTGTTAAGAACTTCACAGC
GCTAATGAAATAGAGGAAAACAAAAATGGTATCTTAATAACAAATAATTA
ACAGAAATACAATTGTAATAGTAATTCAATAGTCATTACAACAACATTCC
ACCGACCATACTTTAAGCGAGTTTATGTGTACATGTATTTGGTACCTCCC
GACGAGTTTGCCGCATGCATACGAAGCTGGCGTGTTACG Coding sequence (CDS) from alignment at Sc0000022:1071586..1074974- >transcript:BL78932_cuf0 ID=transcript:BL78932_cuf0|Name=transcript:BL78932_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2064bp|location=Sequence derived from alignment at Sc0000022:1071586..1074974- (Branchiostoma lanceolatum)
ATGTTGCTCTGGACGCATCTTGCGGCGTACCTACCAGTATGCATGGCGCT
GATGACCTCAGGGGCGTACGCTAAACCCCGTGGGAATCTGATAAGATCCA
CAAGCAAACATCCGAGCGAGAGAGGGTACCGAAGTATTTTGCAGTTCGGC
AATATGATTAGCTGCGCCACCCAGCGGGACCCGTCAGATTACAGCGGATA
TGGTTGCTATTGCGGATACGGAGGTGGTGGAACGCCCATGGACGGCGTAG
ACAGGTGCTGTCAGCAGCATGACCAGTGCTACGGGATGGTACAAGACAGA
TGTGGGTACTATTACGCGTACCTGTTCCCGTATAGCAGCTCTTGCAAAAG
GAGGAGGATAACTTGTCACCGGCCTTGGTGGTCATGGTCGGAATGCCCCA
TCATGCTTTGCGAGTGTGACAAGATGGCCGCCTACTGTTTCGCCTGGTAT
CGGGATCGCTACAACCCGGACAACTACGGGAGATGCGACTCACCATCGGC
CTCGCCGACTGGATAAATGTTGCTCTGGACGCATCTTGCGGCGTACCTAC
CAGTATGCATGGCGCTGATGACCTCAGGGGCGTACGCTAAACCCCGTGGG
AATCTGATAAGATCCACAAGCAAACATCCGAGCGAGAGAGGGTACCGAAG
TATTTTGCAGTTCGGCAATATGATTAGCTGCGCCACCCAGCGGGACCCGT
CAGATTACAGCGGATATGGTTGCTATTGCGGATACGGAGGTGGTGGAACG
CCCATGGACGGCGTAGACAGGTGCTGTCAGCAGCATGACCAGTGCTACGG
GATGGTACAAGACAGATGTGGGTACTATTACGCGTACCTGTTCCCGTATA
GCAGCTCTTGCAAAAGGAGGAGGATAACTTGTCACCGGCCTTGGTGGTCA
TGGTCGGAATGCCCCATCATGCTTTGCGAGTGTGACAAGATGGCCGCCTA
CTGTTTCGCCTGGTATCGGGATCGCTACAACCCGGACAACTACGGGAGAT
GCGACTCACCATCGGCCTCGCCGACTGGATAAATGTTGCTCTGGACGCAT
CTTGCGGCGTACCTACCAGTATGCATGGCGCTGATGACCTCAGGGGCGTA
CGCTAAACCCCGTGGGAATCTGATAAGATCCACAAGCAAACATCCGAGCG
AGAGAGGGTACCGAAGTATTTTGCAGTTCGGCAATATGATTAGCTGCGCC
ACCCAGCGGGACCCGTCAGATTACAGCGGATATGGTTGCTATTGCGGATA
CGGAGGTGGTGGAACGCCCATGGACGGCGTAGACAGGTGCTGTCAGCAGC
ATGACCAGTGCTACGGGATGGTACAAGACAGATGTGGGTACTATTACGCG
TACCTGTTCCCGTATAGCAGCTCTTGCAAAAGGAGGAGGATAACTTGTCA
CCGGCCTTGGTGGTCATGGTCGGAATGCCCCATCATGCTTTGCGAGTGTG
ACAAGATGGCCGCCTACTGTTTCGCCTGGTATCGGGATCGCTACAACCCG
GACAACTACGGGAGATGCGACTCACCATCGGCCTCGCCGACTGGATAAAT
GTTGCTCTGGACGCATCTTGCGGCGTACCTACCAGTATGCATGGCGCTGA
TGACCTCAGGGGCGTACGCTAAACCCCGTGGGAATCTGATAAGATCCACA
AGCAAACATCCGAGCGAGAGAGGGTACCGAAGTATTTTGCAGTTCGGCAA
TATGATTAGCTGCGCCACCCAGCGGGACCCGTCAGATTACAGCGGATATG
GTTGCTATTGCGGATACGGAGGTGGTGGAACGCCCATGGACGGCGTAGAC
AGGTGCTGTCAGCAGCATGACCAGTGCTACGGGATGGTACAAGACAGATG
TGGGTACTATTACGCGTACCTGTTCCCGTATAGCAGCTCTTGCAAAAGGA
GGAGGATAACTTGTCACCGGCCTTGGTGGTCATGGTCGGAATGCCCCATC
ATGCTTTGCGAGTGTGACAAGATGGCCGCCTACTGTTTCGCCTGGTATCG
GGATCGCTACAACCCGGACAACTACGGGAGATGCGACTCACCATCGGCCT
CGCCGACTGGATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000022 | genome | Sc0000022:1071586..1074974 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78932_cuf0 |
| Biotype | protein_coding |
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