transcript:BL78915_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL78915_cuf0
Unique Nametranscript:BL78915_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL78915_cuf0

>transcript:BL78915_cuf0-protein ID=transcript:BL78915_cuf0-protein|Name=transcript:BL78915_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=159bp
MAAAAETPKLPQVVVFSDSICKYLEQQSSFRDAPPFSFILHANRGAKIVD
VAADVIRFNVVVPTLVFIHVGTNNLCMMRSLQEDIEDYDRLITIAMSRFP
SCLVVMSSILPRLDRKDLDDRRIVLNTQLAALCSTRGVVYCDNGDNIKRS
MLAIDALHL
Run BLAST on NCBI

mRNA from alignment at Sc0000290:238198..238923+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL78915_cuf0 ID=transcript:BL78915_cuf0|Name=transcript:BL78915_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=726bp|location=Sequence derived from alignment at Sc0000290:238198..238923+ (Branchiostoma lanceolatum)
ATTCATGTTCACCTGCGATCCCTCGAAGAAATCAAATGGTTATGTCCGAT
TCAAATTCAGGCCGTTACTTCCGGCTTGAACAATTTGCGTCACATCAAGT
CTCTTGATTATTTCATTCATATTTCAATCTTCTATATCTATAGAAATACA
AGCAGATATATTTTTACGATTACGAATAGGGTTGTGTAGAGGATATTGTT
CGTAATCTAAGAGATCAAGACAAGAACGCCTGTGGTCGACTGGGATTATG
GCTGCCGCCGCAGAAACACCTAAACTTCCTCAGGTTGTCGTTTTCTCGGA
CTCGATATGTAAGTATCTTGAACAACAGTCTTCTTTTCGTGATGCACCAC
CTTTTTCGTTCATCTTACATGCCAATCGTGGTGCCAAAATTGTCGACGTC
GCTGCAGATGTGATCCGTTTCAATGTTGTTGTACCTACGTTGGTATTTAT
TCATGTCGGTACGAACAATCTGTGCATGATGCGATCTCTACAGGAAGACA
TTGAAGACTATGATCGACTGATTACCATTGCTATGTCTCGATTTCCTTCA
TGTTTGGTTGTGATGTCCAGCATTCTGCCACGATTAGATCGTAAAGATTT
GGACGACAGACGGATCGTCTTAAACACGCAGTTAGCTGCTCTGTGTTCCA
CCCGTGGTGTTGTCTACTGTGATAATGGTGACAATATAAAAAGGTCAATG
TTGGCCATTGATGCTTTGCATCTTAG

Coding sequence (CDS) from alignment at Sc0000290:238198..238923+

>transcript:BL78915_cuf0 ID=transcript:BL78915_cuf0|Name=transcript:BL78915_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=477bp|location=Sequence derived from alignment at Sc0000290:238198..238923+ (Branchiostoma lanceolatum)
ATGGCTGCCGCCGCAGAAACACCTAAACTTCCTCAGGTTGTCGTTTTCTC
GGACTCGATATGTAAGTATCTTGAACAACAGTCTTCTTTTCGTGATGCAC
CACCTTTTTCGTTCATCTTACATGCCAATCGTGGTGCCAAAATTGTCGAC
GTCGCTGCAGATGTGATCCGTTTCAATGTTGTTGTACCTACGTTGGTATT
TATTCATGTCGGTACGAACAATCTGTGCATGATGCGATCTCTACAGGAAG
ACATTGAAGACTATGATCGACTGATTACCATTGCTATGTCTCGATTTCCT
TCATGTTTGGTTGTGATGTCCAGCATTCTGCCACGATTAGATCGTAAAGA
TTTGGACGACAGACGGATCGTCTTAAACACGCAGTTAGCTGCTCTGTGTT
CCACCCGTGGTGTTGTCTACTGTGATAATGGTGACAATATAAAAAGGTCA
ATGTTGGCCATTGATGCTTTGCATCTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL78915gene:BL78915Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL78915_cuf0-E1BL78915_cuf0-E1-1564476830-425155Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL78915_cuf0transcript:BL78915_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000290genomeSc0000290:238198..238923 +
Properties
Property NameValue
Transcript idBL78915_cuf0
Biotypeprotein_coding