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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78880_cuf0 >transcript:BL78880_cuf0-protein ID=transcript:BL78880_cuf0-protein|Name=transcript:BL78880_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=361bp
MNRTMKTIFIFMIAASTLLVTFFLFHTTQNDGFLTVITKNNPYQRVSHVK
KMKISFDKDSNITDEDLHMLTIPQTWRYNKTAADLVSNASASLEINNLFW
TAELGKALKKGKCPLKEAKKIHKRACLPSNIVGRHKTCALVGNGGILLGS
NCGPEIDSYDYVARMNLPLVKGFEKDVGKRTNMTILNKETAKRLKLSAFL
ENRSRDVYESRLRAIEGSVLLIHSGSIHALLSALRQYGSLSFVGLASKTM
RFFTDHDKLNGINIIASTIAGMRFVKLPTLGLTTVITLKTFCDRLHLYGF
YPFQKDLNNRTIPYHYFPGDPLRPIIPNANGNHNMSWEYNFHRELHRRGV
YMMHLGSCRVS Run BLAST on NCBI mRNA from alignment at Sc0000022:2231231..2234629+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78880_cuf0 ID=transcript:BL78880_cuf0|Name=transcript:BL78880_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3399bp|location=Sequence derived from alignment at Sc0000022:2231231..2234629+ (Branchiostoma lanceolatum)
TAAAGTTAGTACTTTGTAACTTTGCAGAAGTAGAGACCACGTCAAAGACA
AGCCCGTGTGCCCCTAGGGTAAGTCATGTACTGTTTGGTAAACGGTGCAG
CCATTTTATATTTTCATGTCGACATTAACGAGCGTTTGCTTCTGGCATAT
GATTCGCCTTGTTCACCTTGTTTTCATCTGAGTATGATGCACTCCTGTAT
GACAAAACTATGCATACCTGGGTGTGTGTGGTGCTGCACTATATCTATCA
AACGCACTGTTAGACAAAGTGGCGGATTCATGTACACCGGTAGGGAATGT
AAATGTGAGCCTTGGGGTAGACATGACTACAGTAAAGGCAAAACAGGTGA
AGGTTGTTCAATAGCCGTTTTAAGCCGCAGGCGCAGTGGGGTTATCCACT
GTGTCTAGGGCACGCTTTAGATTAGAAGGTGGAGCCCATCCATCACCTTC
CATCGACAAGCCTGAACACACAACAAGACAAACAAACAGACTACAAACAA
TACCTCCGTCTTCACGGAGGTAAAAAGAAACACACACACACAAGAAGCCT
TAAATAGAAGTAAGAAAACAGTAACGTGCATTCTAACTTTATTGTCTGCA
GAATATAATAAGATAATACGTACTTTGTTACAAGTTGTTACAAGTTGTTA
ATTCACTTTTATATCCATCACAGACACGCTACAACATTGAAAACCAACAT
GAATCGTACGATGAAGACCATCTTCATTTTCATGATAGCAGCCAGCACTT
TACTCGTGACCTTTTTCCTTTTCCATACTACACAAAATGACGGCTTTCTT
ACAGTCATCACCAAAAACAACCCATACCAAAGGTAGAAATTTGGGGAATT
TCTTCTTTTTGGTAAAAAGCAGGCTTAATGTGAATCTCAGTATAAAAATC
ATGAAAACGCAAAATTGTTTTAAAAGTTTAAAACTCAATTTCAAATCCAC
TACATTGGTATCAGAGCGTGTGTTTTTCTCATCAATTTTGCGTTTTCATG
ATTTTTGAGTCAGACCAGGGACATTATATAGTCAAGTCAAGTCAAGTCAA
GTCAAGTTTATTGCACAACAATTGCTTCAGGTACAATGTATGGCAAATAA
CATGGAATATCAAGAACTACGGACTATTTATACTAGTGTACTAATCTAAC
ATCATTACTCGATACATAACATAATGGAATTTACGTTTAACTATATAGGA
CTACATACCCAGTATGTACATAATTCTACGATTGATATGTTCTATATTCA
ATCTGCATCACTAAAGAATATCTAGTCTACTTTCAGAGTTTCTCATGTCA
AGAAGATGAAAATTTCTTTCGATAAGGATTCTAACATAACGGATGAAGAC
TTGCACATGCTGACGATACCACAGACCTGGCGTTACAACAAGACAGCGGC
AGATTTAGTAAGGTAACACAACCGTACCATTCAACATTCATTCAACCATG
TCCATTTAAAACACTTCACCAACATATCTGTACTGTGCATCAAGCTTAAG
TTAGTTTCCTCTGTCTCTTCGCTTTTTTAAGGAGATCTATCATGATAATT
ATAAGTTAGCCCCTCCCCATACGATTTGATGTATAGGCGGTGCATATCAT
GTCTAGCATTTAAGAAAATAGTGCCAGATAAAAAGAAACAGTTGAGTTAA
TTACTTAAGCAAAGGAACAAACTTCCCATCGAAAGGATAAGAAAAAGTTT
TGTTGCCAATATGTAATTTTTCGTACTTAAACAAGATATGCATTGTTTTC
TATTTCATTCTTTAGCAATGCTTCGGCTAGTTTGGAGATCAATAATTTAT
TCTGGACGGCCGAATTGGGAAAGGCACTGAAGAAAGGAAAATGTCCTCTC
AAGGAAGCGAAGAAGATTCACAAGCGCGCCTGTCTCCCAAGTAACATCGT
AGGTCGTCATAAGACGTGCGCTCTCGTGGGCAACGGCGGGATCCTTCTCG
GAAGCAACTGCGGTCCCGAAATCGACTCCTATGATTACGTGGCACGGATG
AACCTGCCTCTCGTCAAAGGTTTCGAAAAAGACGTCGGCAAACGTACCAA
CATGACGATACTGAACAAGGAAACTGCCAAGCGGCTGAAATTGTCCGCAT
TTTTGGAGAATCGAAGCCGAGATGTGTATGAGAGTCGACTTCGTGCCATT
GAAGGTTCTGTTCTGTTGATACACAGTGGGTCGATACACGCGCTCCTCTC
AGCTCTACGGCAGTACGGGTCCCTGTCGTTCGTAGGATTGGCTTCGAAAA
CGATGAGATTTTTTACGGACCACGACAAATTAAATGGAATTAATATGTGA
GTTATAACATATTGAATATTTCTTTAAAAATGTTTTGTAAACCTTCGTCC
ATGGCCGCCGCCATCTTGGGATTATGAGAACTTCTGGGCGCCGTCTTGTT
TCCGGTTTGATTGTGTCGTCATTTCTTTTTTGGGTCGTTCGTTTTGGTCA
TGATTAGTGTATGGTGTTTAGAAAAGTGTTTTTCTATATCTTATCTGCAT
GGAAGACGGTGCAGTGACAATTTGAAGTTGTATTTTTAGGTTTGATTATA
GATCACTCTAACTACGTATTTTGCTTATTTTCAGAATCGCTTCCACCATA
GCTGGGATGAGGTTCGTCAAACTTCCCACTCTGGGTCTCACCACGGTTAT
AACTTTGAAAACCTTTTGCGATCGTCTTCACCTCTACGGCTTCTACCCGT
TTCAGAAAGACTTGAACAACAGAACCATACCTTACCACTACTTTCCCGGA
GACCCCCTTAGACCCATCATACCAAACGCCAATGGGAACCACAACATGAG
TTGGGAGTACAATTTTCACAGGGAACTGCACAGGCGGGGTGTCTACATGA
TGCACCTTGGTTCATGCCGTGTCAGTTGATTGATTTTATTCAATTTTATT
AGAATTGCAACAATGCAATACACGTGGGACACAGGCAACTATTGCTGGAG
TCATGACCCACACGTAAATACCCGTTTTTACACTTGTGTAAAGTAAGGAA
AGTTGTGTTAAGTGCCCTTTCCCAACTGGGAACAACATCGGTGGCGTCAG
GGGATTCGAACTCGGGACCGCTGGGTTCTGGGCCGACACCCCTGCCGTTA
CACCACACCATAGATCAGATTCAGTTGATCAGATGTAGTCGCTTTTCTTA
ACCGCTAATCGTTGCATTCGTATTACTTTTATTACAACAAGAAAACAAGA
AATCAGTGATATATTTAGAGCTTCTTTTTTATGTTTGTTCATTAGCTATA
TGCAACTAAGATTTCATTAAAACTAAACTAAAATCATTTCAATAAAAACA
AAACTAGCACCATGTACATTTTTGCATGTAGCATATTTTACTTATAGCCC
TTAATATTCTGTATTTGTCATTATCATTTGTGTTGTACGTGCAATTAGC Coding sequence (CDS) from alignment at Sc0000022:2231231..2234629+ >transcript:BL78880_cuf0 ID=transcript:BL78880_cuf0|Name=transcript:BL78880_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4344bp|location=Sequence derived from alignment at Sc0000022:2231231..2234629+ (Branchiostoma lanceolatum)
ATGAATCGTACGATGAAGACCATCTTCATTTTCATGATAGCAGCCAGCAC
TTTACTCGTGACCTTTTTCCTTTTCCATACTACACAAAATGACGGCTTTC
TTACAGTCATCACCAAAAACAACCCATACCAAAGAGTTTCTCATGTCAAG
AAGATGAAAATTTCTTTCGATAAGGATTCTAACATAACGGATGAAGACTT
GCACATGCTGACGATACCACAGACCTGGCGTTACAACAAGACAGCGGCAG
ATTTAGTAAGCAATGCTTCGGCTAGTTTGGAGATCAATAATTTATTCTGG
ACGGCCGAATTGGGAAAGGCACTGAAGAAAGGAAAATGTCCTCTCAAGGA
AGCGAAGAAGATTCACAAGCGCGCCTGTCTCCCAAGTAACATCGTAGGTC
GTCATAAGACGTGCGCTCTCGTGGGCAACGGCGGGATCCTTCTCGGAAGC
AACTGCGGTCCCGAAATCGACTCCTATGATTACGTGGCACGGATGAACCT
GCCTCTCGTCAAAGGTTTCGAAAAAGACGTCGGCAAACGTACCAACATGA
CGATACTGAACAAGGAAACTGCCAAGCGGCTGAAATTGTCCGCATTTTTG
GAGAATCGAAGCCGAGATGTGTATGAGAGTCGACTTCGTGCCATTGAAGG
TTCTGTTCTGTTGATACACAGTGGGTCGATACACGCGCTCCTCTCAGCTC
TACGGCAGTACGGGTCCCTGTCGTTCGTAGGATTGGCTTCGAAAACGATG
AGATTTTTTACGGACCACGACAAATTAAATGGAATTAATATAATCGCTTC
CACCATAGCTGGGATGAGGTTCGTCAAACTTCCCACTCTGGGTCTCACCA
CGGTTATAACTTTGAAAACCTTTTGCGATCGTCTTCACCTCTACGGCTTC
TACCCGTTTCAGAAAGACTTGAACAACAGAACCATACCTTACCACTACTT
TCCCGGAGACCCCCTTAGACCCATCATACCAAACGCCAATGGGAACCACA
ACATGAGTTGGGAGTACAATTTTCACAGGGAACTGCACAGGCGGGGTGTC
TACATGATGCACCTTGGTTCATGCCGTGTCAGTTGAATGAATCGTACGAT
GAAGACCATCTTCATTTTCATGATAGCAGCCAGCACTTTACTCGTGACCT
TTTTCCTTTTCCATACTACACAAAATGACGGCTTTCTTACAGTCATCACC
AAAAACAACCCATACCAAAGAGTTTCTCATGTCAAGAAGATGAAAATTTC
TTTCGATAAGGATTCTAACATAACGGATGAAGACTTGCACATGCTGACGA
TACCACAGACCTGGCGTTACAACAAGACAGCGGCAGATTTAGTAAGCAAT
GCTTCGGCTAGTTTGGAGATCAATAATTTATTCTGGACGGCCGAATTGGG
AAAGGCACTGAAGAAAGGAAAATGTCCTCTCAAGGAAGCGAAGAAGATTC
ACAAGCGCGCCTGTCTCCCAAGTAACATCGTAGGTCGTCATAAGACGTGC
GCTCTCGTGGGCAACGGCGGGATCCTTCTCGGAAGCAACTGCGGTCCCGA
AATCGACTCCTATGATTACGTGGCACGGATGAACCTGCCTCTCGTCAAAG
GTTTCGAAAAAGACGTCGGCAAACGTACCAACATGACGATACTGAACAAG
GAAACTGCCAAGCGGCTGAAATTGTCCGCATTTTTGGAGAATCGAAGCCG
AGATGTGTATGAGAGTCGACTTCGTGCCATTGAAGGTTCTGTTCTGTTGA
TACACAGTGGGTCGATACACGCGCTCCTCTCAGCTCTACGGCAGTACGGG
TCCCTGTCGTTCGTAGGATTGGCTTCGAAAACGATGAGATTTTTTACGGA
CCACGACAAATTAAATGGAATTAATATAATCGCTTCCACCATAGCTGGGA
TGAGGTTCGTCAAACTTCCCACTCTGGGTCTCACCACGGTTATAACTTTG
AAAACCTTTTGCGATCGTCTTCACCTCTACGGCTTCTACCCGTTTCAGAA
AGACTTGAACAACAGAACCATACCTTACCACTACTTTCCCGGAGACCCCC
TTAGACCCATCATACCAAACGCCAATGGGAACCACAACATGAGTTGGGAG
TACAATTTTCACAGGGAACTGCACAGGCGGGGTGTCTACATGATGCACCT
TGGTTCATGCCGTGTCAGTTGAATGAATCGTACGATGAAGACCATCTTCA
TTTTCATGATAGCAGCCAGCACTTTACTCGTGACCTTTTTCCTTTTCCAT
ACTACACAAAATGACGGCTTTCTTACAGTCATCACCAAAAACAACCCATA
CCAAAGAGTTTCTCATGTCAAGAAGATGAAAATTTCTTTCGATAAGGATT
CTAACATAACGGATGAAGACTTGCACATGCTGACGATACCACAGACCTGG
CGTTACAACAAGACAGCGGCAGATTTAGTAAGCAATGCTTCGGCTAGTTT
GGAGATCAATAATTTATTCTGGACGGCCGAATTGGGAAAGGCACTGAAGA
AAGGAAAATGTCCTCTCAAGGAAGCGAAGAAGATTCACAAGCGCGCCTGT
CTCCCAAGTAACATCGTAGGTCGTCATAAGACGTGCGCTCTCGTGGGCAA
CGGCGGGATCCTTCTCGGAAGCAACTGCGGTCCCGAAATCGACTCCTATG
ATTACGTGGCACGGATGAACCTGCCTCTCGTCAAAGGTTTCGAAAAAGAC
GTCGGCAAACGTACCAACATGACGATACTGAACAAGGAAACTGCCAAGCG
GCTGAAATTGTCCGCATTTTTGGAGAATCGAAGCCGAGATGTGTATGAGA
GTCGACTTCGTGCCATTGAAGGTTCTGTTCTGTTGATACACAGTGGGTCG
ATACACGCGCTCCTCTCAGCTCTACGGCAGTACGGGTCCCTGTCGTTCGT
AGGATTGGCTTCGAAAACGATGAGATTTTTTACGGACCACGACAAATTAA
ATGGAATTAATATAATCGCTTCCACCATAGCTGGGATGAGGTTCGTCAAA
CTTCCCACTCTGGGTCTCACCACGGTTATAACTTTGAAAACCTTTTGCGA
TCGTCTTCACCTCTACGGCTTCTACCCGTTTCAGAAAGACTTGAACAACA
GAACCATACCTTACCACTACTTTCCCGGAGACCCCCTTAGACCCATCATA
CCAAACGCCAATGGGAACCACAACATGAGTTGGGAGTACAATTTTCACAG
GGAACTGCACAGGCGGGGTGTCTACATGATGCACCTTGGTTCATGCCGTG
TCAGTTGAATGAATCGTACGATGAAGACCATCTTCATTTTCATGATAGCA
GCCAGCACTTTACTCGTGACCTTTTTCCTTTTCCATACTACACAAAATGA
CGGCTTTCTTACAGTCATCACCAAAAACAACCCATACCAAAGAGTTTCTC
ATGTCAAGAAGATGAAAATTTCTTTCGATAAGGATTCTAACATAACGGAT
GAAGACTTGCACATGCTGACGATACCACAGACCTGGCGTTACAACAAGAC
AGCGGCAGATTTAGTAAGCAATGCTTCGGCTAGTTTGGAGATCAATAATT
TATTCTGGACGGCCGAATTGGGAAAGGCACTGAAGAAAGGAAAATGTCCT
CTCAAGGAAGCGAAGAAGATTCACAAGCGCGCCTGTCTCCCAAGTAACAT
CGTAGGTCGTCATAAGACGTGCGCTCTCGTGGGCAACGGCGGGATCCTTC
TCGGAAGCAACTGCGGTCCCGAAATCGACTCCTATGATTACGTGGCACGG
ATGAACCTGCCTCTCGTCAAAGGTTTCGAAAAAGACGTCGGCAAACGTAC
CAACATGACGATACTGAACAAGGAAACTGCCAAGCGGCTGAAATTGTCCG
CATTTTTGGAGAATCGAAGCCGAGATGTGTATGAGAGTCGACTTCGTGCC
ATTGAAGGTTCTGTTCTGTTGATACACAGTGGGTCGATACACGCGCTCCT
CTCAGCTCTACGGCAGTACGGGTCCCTGTCGTTCGTAGGATTGGCTTCGA
AAACGATGAGATTTTTTACGGACCACGACAAATTAAATGGAATTAATATA
ATCGCTTCCACCATAGCTGGGATGAGGTTCGTCAAACTTCCCACTCTGGG
TCTCACCACGGTTATAACTTTGAAAACCTTTTGCGATCGTCTTCACCTCT
ACGGCTTCTACCCGTTTCAGAAAGACTTGAACAACAGAACCATACCTTAC
CACTACTTTCCCGGAGACCCCCTTAGACCCATCATACCAAACGCCAATGG
GAACCACAACATGAGTTGGGAGTACAATTTTCACAGGGAACTGCACAGGC
GGGGTGTCTACATGATGCACCTTGGTTCATGCCGTGTCAGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000022 | genome | Sc0000022:2231231..2234629 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78880_cuf0 |
| Biotype | protein_coding |
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