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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78875_cuf3 >transcript:BL78875_cuf3-protein ID=transcript:BL78875_cuf3-protein|Name=transcript:BL78875_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=315bp
MVHNIHCRTQSTPSNNSVFTEGKSRTILHDTASTSDWVYNKTAADEVRAA
AARLSLYSLFRLSWLGHPPQKRKCPSKRKTCRTRSIVGHQKTCALVGNSG
ILLGSNCGPEIDSKDFVVRMDLPDVLVFEKDVGGRTDMTVVSPETANRVE
GSSKMTNRSEDVYEGRLRGIKDSILMTDIESRGRMKAAIRRYKLSFRLLS
TKIRIIGIIKTQRSVNQIASAISGRPFRRKPTVGLFTSLMMTSFCDKLDL
YGFFPFQKDTNNRSIPYHYYQGDFVAPIIQNKGGHHNMAWEYNFHKELHK
KGVYRMHVGPCTNKR Run BLAST on NCBI mRNA from alignment at Sc0000022:2219296..2222633+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78875_cuf3 ID=transcript:BL78875_cuf3|Name=transcript:BL78875_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3338bp|location=Sequence derived from alignment at Sc0000022:2219296..2222633+ (Branchiostoma lanceolatum)
TAAAGCTCAAAGAATAAGAGAACAATAAGGAGGTATGCACGCATGTGCAG
CAAAGTGCATTGTGGGTAAAATGCCAAAGTGAAGGCCCCTCGGACAAAAA
TTGAGTCAGTCGTCGAGACAAGAACAAGGGTTCTGACCTTTGACATATTA
CCAACAATGCCTCATTTCGCTGCGCATGCGTACATAGAATCGCAAACCTT
TATAGATTACGGACGCTTATAACCTGTGATTCGCTGAAATGCAAATAGTG
GTGATGCAAATGCATATGGTGGACAGCGTTCGTTGTCAATGTTTAACAGT
ATATGTATAGACTGAAATGCTCTAAATTATGATAACTCGTGGGTTAATAT
GGTGCATAACATCCACTGCAGGACACAGTCGACACCTTCAAACAACAGCG
TTTTTACTGAAGGCAAATCGAGAACGATATTACACGACACGGCATCAACA
TCGGATTGGGTTTACAACAAAACGGCAGCGGATGAAGTACGGTACGTCTC
TCTCTAAGTTAATCAGCATGTCACATGTTCGTGTTTCCATGCTCAGATCA
TCACATGGCAGTTGCAATTTGTAAAAGCAAGGAGGTTAAAATAGGTAGAA
GTGAAACCAGTTCAGCAGTTGTTGTGGAAGCAAGGAGGTTAATATAGGTG
AAAGCAACACTAGTGTGATAGCCTGGAGTGTAGTTGTCAACTTGGTAAGT
GATACCAGTCTACAACACCAGCTAGTTTCACTTTCTGCATTTTTTAAATT
CAGGAATAAAAGCCTTAGTCGGTGGATGTGAAGCCATGTTTCCTTGCTTC
AATTCTTGTTGTGATGTGATGTTAGTTGATATTTATAACCCATCTTTCAG
AGCTGCCGCAGCACGTTTGAGCCTCTACAGTCTCTTCCGTTTGAGCTGGC
TGGGCCATCCGCCACAGAAAAGGAAGTGTCCGTCAAAAAGAAAGACTTGC
AGAACTAGAAGCATCGTAGGTCATCAGAAGACGTGCGCTCTCGTGGGCAA
CAGTGGAATCCTCCTTGGAAGCAACTGCGGTCCTGAGATTGACTCCAAAG
ACTTCGTGGTACGAATGGACCTACCGGACGTCTTAGTGTTCGAAAAAGAC
GTAGGCGGACGGACCGACATGACAGTTGTAAGCCCAGAAACAGCAAACCG
GGTGGAAGGGTCTTCTAAAATGACGAATCGAAGTGAGGACGTGTATGAGG
GCCGCCTTCGTGGAATAAAAGACTCTATCCTAATGACAGACATTGAATCA
CGAGGACGCATGAAAGCGGCAATCAGACGATACAAGTTATCGTTTAGGCT
TCTGAGCACCAAAATCCGGATCATTGGAATAATCAAAACCCAAAGGAGTG
TTAATCAGTAAGTGCCACATCGTCTCTGTTCATGATTTGTGCAGATTATT
TCCTTGAAATCACGAATGAAGCAAACAGGTTGCTAGCGCTGTGTATTGGA
AGAATCTTTTTCTTTTGTACTGTATCAGCAAATCCATTTCTTCGCTTAGC
TCCCGTAGATGGGTGCCGCCATGTTTGCACCGCCATGTTTGTTTCCCATC
ATGCCAAGGAAGAGGTGTATGAAGGAAAGCGATGTTGCCGTTTTGGATTT
GATGTAAAACGAAGAAATCCTAGGATGTATGTATTGTGATGCCACACTCT
AAGAGCTCTCAATTTTATGTTTTTTTTTTCTTGCTTACAGGATCGCGTCA
GCTATATCAGGTCGCCCCTTTAGGAGAAAGCCAACTGTTGGACTGTTTAC
CTCCTTGATGATGACATCCTTCTGCGACAAACTTGACCTCTACGGCTTCT
TCCCGTTTCAAAAAGACACCAATAACCGATCTATACCTTACCACTACTAT
CAAGGGGACTTCGTCGCACCCATTATACAGAACAAAGGTGGTCACCACAA
TATGGCCTGGGAGTACAATTTCCACAAGGAGCTACACAAAAAGGGTGTTT
ACAGGATGCATGTTGGGCCATGTACAAATAAGAGATAGGAAATTCACCCA
AACCCTGATTAGCCAATGCCTAAGATACAATGTCTACCAAACTGCATATG
GTATGACAAATAAAAACGAAAGTAATATCTTAGAGATGAAGATGATGATT
CTATATGATTACGTACTATCAACGACTAGAACCAAATATCTTAACTTTAT
CAGCCGACTTATCAGTTGGCAGGAATTCAAAGGTATCTCTAAAACTCATG
AATGCTTATCGGGACCTCTCGCACCCAAAGCGAGAATCATACCCCTAGAC
CAACAGGCCAACCTTTCAATATTGCTGTCTAAAGTGGAAGATTTATCATA
CTGTACGTGTCTTCCTTTATCAAGTATCAAGTATGACAGTATATACTTAT
GAAACAATACGGAAGTTAAACACACTCCTAGCCTAGCCCCCTGCTGCAGT
GATTGCACCACAGTGTGGCCCAGGGCTATGAAACGGAGATGAGCACCGCC
CTATACACCTTATGATGAGGGGGGATATTAACTAGCTTTATTAATGACAG
TATATAAGCAAGGTATCAAACAGGCCGGGTATGGCAACTATGAATTTTGG
GATAGCAGAGGCTCGACACAGACAGATGGCGGCGTCAAATCGCGACCGGA
TTTTGGAGGAAGTTTACTCGGCCGTGTACGGATATACGCGTACACAAAAG
GTGCGTATGAACAGGGGCTATATGGATGTTATATTTGACCTGCCATGTTT
GCCCTTTTCCGCGTCTTTTATATTTAGATCATCTCCCGATACCGTATCAA
AACATATTTGGGTTGTTGAACGGAGTCCTCAATTATTGCAGTAATACATA
GATGTATCTAAATTTAAGCCTTTGTGACTATCTATATTTAAGCCTTTGTG
ACAACTGAATAAACCGTACTTCCGCAGAAAATTTGAAGACAGTCTGCCAA
GCAAGCCGATCGCGAGAAAACGAGCGACAATGTGTCCATCATCCTCCCTC
CCCACTTTGCAGTAGTGTGATGATTTCGACATCTCCCAGGGGTGTGATCA
ACTAATGTGAATCTTAACCAAAGTAGCAAAATCAGTAGTACACGTCTACA
ACATATGCAGGAATACAAGGCCCAAAATAATTAATTTAAGAATAAATCAA
TGTGGAACTTTAGTAATGACCTAAATTTGACCTGTCATGTTGTTGACGCT
CCTGCTAATTCAAAACGTGTCCGATTTTCGAAAAGTAGAAAGAATCATAT
CTTTGAAGGCATCTCAGAACTTAAAATATCCAAGTTTTCTTAGAGCACGA
TAACTCTAGATCTGTAGCCATCCTTAAATAGAAATACTTGTTGAAGGTAA
AGCCTGGAACTGACACAGGATGACACTCAGGCTAAGCC Coding sequence (CDS) from alignment at Sc0000022:2219296..2222633+ >transcript:BL78875_cuf3 ID=transcript:BL78875_cuf3|Name=transcript:BL78875_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2844bp|location=Sequence derived from alignment at Sc0000022:2219296..2222633+ (Branchiostoma lanceolatum)
ATGGTGCATAACATCCACTGCAGGACACAGTCGACACCTTCAAACAACAG
CGTTTTTACTGAAGGCAAATCGAGAACGATATTACACGACACGGCATCAA
CATCGGATTGGGTTTACAACAAAACGGCAGCGGATGAAGTACGAGCTGCC
GCAGCACGTTTGAGCCTCTACAGTCTCTTCCGTTTGAGCTGGCTGGGCCA
TCCGCCACAGAAAAGGAAGTGTCCGTCAAAAAGAAAGACTTGCAGAACTA
GAAGCATCGTAGGTCATCAGAAGACGTGCGCTCTCGTGGGCAACAGTGGA
ATCCTCCTTGGAAGCAACTGCGGTCCTGAGATTGACTCCAAAGACTTCGT
GGTACGAATGGACCTACCGGACGTCTTAGTGTTCGAAAAAGACGTAGGCG
GACGGACCGACATGACAGTTGTAAGCCCAGAAACAGCAAACCGGGTGGAA
GGGTCTTCTAAAATGACGAATCGAAGTGAGGACGTGTATGAGGGCCGCCT
TCGTGGAATAAAAGACTCTATCCTAATGACAGACATTGAATCACGAGGAC
GCATGAAAGCGGCAATCAGACGATACAAGTTATCGTTTAGGCTTCTGAGC
ACCAAAATCCGGATCATTGGAATAATCAAAACCCAAAGGAGTGTTAATCA
GATCGCGTCAGCTATATCAGGTCGCCCCTTTAGGAGAAAGCCAACTGTTG
GACTGTTTACCTCCTTGATGATGACATCCTTCTGCGACAAACTTGACCTC
TACGGCTTCTTCCCGTTTCAAAAAGACACCAATAACCGATCTATACCTTA
CCACTACTATCAAGGGGACTTCGTCGCACCCATTATACAGAACAAAGGTG
GTCACCACAATATGGCCTGGGAGTACAATTTCCACAAGGAGCTACACAAA
AAGGGTGTTTACAGGATGCATGTTGGGCCATGTACAAATAAGAGATAGAT
GGTGCATAACATCCACTGCAGGACACAGTCGACACCTTCAAACAACAGCG
TTTTTACTGAAGGCAAATCGAGAACGATATTACACGACACGGCATCAACA
TCGGATTGGGTTTACAACAAAACGGCAGCGGATGAAGTACGAGCTGCCGC
AGCACGTTTGAGCCTCTACAGTCTCTTCCGTTTGAGCTGGCTGGGCCATC
CGCCACAGAAAAGGAAGTGTCCGTCAAAAAGAAAGACTTGCAGAACTAGA
AGCATCGTAGGTCATCAGAAGACGTGCGCTCTCGTGGGCAACAGTGGAAT
CCTCCTTGGAAGCAACTGCGGTCCTGAGATTGACTCCAAAGACTTCGTGG
TACGAATGGACCTACCGGACGTCTTAGTGTTCGAAAAAGACGTAGGCGGA
CGGACCGACATGACAGTTGTAAGCCCAGAAACAGCAAACCGGGTGGAAGG
GTCTTCTAAAATGACGAATCGAAGTGAGGACGTGTATGAGGGCCGCCTTC
GTGGAATAAAAGACTCTATCCTAATGACAGACATTGAATCACGAGGACGC
ATGAAAGCGGCAATCAGACGATACAAGTTATCGTTTAGGCTTCTGAGCAC
CAAAATCCGGATCATTGGAATAATCAAAACCCAAAGGAGTGTTAATCAGA
TCGCGTCAGCTATATCAGGTCGCCCCTTTAGGAGAAAGCCAACTGTTGGA
CTGTTTACCTCCTTGATGATGACATCCTTCTGCGACAAACTTGACCTCTA
CGGCTTCTTCCCGTTTCAAAAAGACACCAATAACCGATCTATACCTTACC
ACTACTATCAAGGGGACTTCGTCGCACCCATTATACAGAACAAAGGTGGT
CACCACAATATGGCCTGGGAGTACAATTTCCACAAGGAGCTACACAAAAA
GGGTGTTTACAGGATGCATGTTGGGCCATGTACAAATAAGAGATAGATGG
TGCATAACATCCACTGCAGGACACAGTCGACACCTTCAAACAACAGCGTT
TTTACTGAAGGCAAATCGAGAACGATATTACACGACACGGCATCAACATC
GGATTGGGTTTACAACAAAACGGCAGCGGATGAAGTACGAGCTGCCGCAG
CACGTTTGAGCCTCTACAGTCTCTTCCGTTTGAGCTGGCTGGGCCATCCG
CCACAGAAAAGGAAGTGTCCGTCAAAAAGAAAGACTTGCAGAACTAGAAG
CATCGTAGGTCATCAGAAGACGTGCGCTCTCGTGGGCAACAGTGGAATCC
TCCTTGGAAGCAACTGCGGTCCTGAGATTGACTCCAAAGACTTCGTGGTA
CGAATGGACCTACCGGACGTCTTAGTGTTCGAAAAAGACGTAGGCGGACG
GACCGACATGACAGTTGTAAGCCCAGAAACAGCAAACCGGGTGGAAGGGT
CTTCTAAAATGACGAATCGAAGTGAGGACGTGTATGAGGGCCGCCTTCGT
GGAATAAAAGACTCTATCCTAATGACAGACATTGAATCACGAGGACGCAT
GAAAGCGGCAATCAGACGATACAAGTTATCGTTTAGGCTTCTGAGCACCA
AAATCCGGATCATTGGAATAATCAAAACCCAAAGGAGTGTTAATCAGATC
GCGTCAGCTATATCAGGTCGCCCCTTTAGGAGAAAGCCAACTGTTGGACT
GTTTACCTCCTTGATGATGACATCCTTCTGCGACAAACTTGACCTCTACG
GCTTCTTCCCGTTTCAAAAAGACACCAATAACCGATCTATACCTTACCAC
TACTATCAAGGGGACTTCGTCGCACCCATTATACAGAACAAAGGTGGTCA
CCACAATATGGCCTGGGAGTACAATTTCCACAAGGAGCTACACAAAAAGG
GTGTTTACAGGATGCATGTTGGGCCATGTACAAATAAGAGATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000022 | genome | Sc0000022:2219296..2222633 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78875_cuf3 |
| Biotype | protein_coding |
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