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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78783_cuf1 >transcript:BL78783_cuf1-protein ID=transcript:BL78783_cuf1-protein|Name=transcript:BL78783_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=251bp
RCVSFEEQQMAEVRSRPWSSDETRCLISLWADHAVQVKLRSFRNKEGYAL
LEKAMREEGYPRSSKQIKVKLRDLKVKYRKAKQNNNRSGSARASCPFFEE
LDAVLWTRPSTNPTFLLETTNQALFSKGKGQILRVSAALWLLFHAVDKPD
KVSNSLDSGLSLPERVIPERVVSAAVAVVTYSIHQTGLLHGRRHNEDAGT
VDNSTTDVPRKPASTTDVPHLESASTSRRTTNFGGQTLSGASYWFQDESC
Q Run BLAST on NCBI mRNA from alignment at Sc0000029:2297081..2301897- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78783_cuf1 ID=transcript:BL78783_cuf1|Name=transcript:BL78783_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4817bp|location=Sequence derived from alignment at Sc0000029:2297081..2301897- (Branchiostoma lanceolatum)
TCGTTGTGTTTCTTTTGAGGAACAACAAATGGCGGAAGTCCGTAGCCGAC
CCTGGAGTAGTGACGAGACGAGGTGTCTCATCAGTTTGTGGGCAGATCAC
GCAGTTCAGGTCAAGCTAAGGTCGTTCAGGAATAAGGAGGGATATGCATT
GCTGGAAAAAGCAATGAGGGAGGAGGGCTACCCGAGGTCTTCAAAACAAA
TCAAGGTCAAGCTTCGTGACTTGAAAGTGAAGTATAGGAAGGCAAAACAG
AACAACAACAGGAGTGGGAGTGCGAGAGCTTCATGTCCATTTTTCGAGGA
GCTGGATGCAGTTTTGTGGACCCGCCCTTCTACGAATCCAACCTTCCTAT
TAGAGACTACAAACCAAGGTATATCTCCATGTTTCTTTTGATTATTTCTT
GATATTTTGCAAGTGTACACCGGACCTAATATAAAATCAATTTATAATCC
TGTATACGTCATGAAACGATTAATCATTCTTGTGGGAGGGGGGCACTTTT
TGACAGGGTAAGAATTACTGGGTGACTCACTTCATGCTCACTTGTATGCA
TAAAAAATTGGAGCTGTGGAACTTTGACTGTAGATATTTGTTTAGTGCTA
CGTACATACATATGTAAAGGTACTTTTTATTCAATAATATACTGGTATAA
TCTATAAATTGGAAGGTGTCCTTCCGCATCCTGAAGCGCCTGTAGAACTC
AAAGTTACTGTAGGTCTCGAGGACCAGATGCTCCCACCATTGGGTGCTAC
GTTCTTTTGTCCAGACCAACCTTTCTACCGGACCGCCACCGTCTGCGATG
GCGATCGCGGCGGCTAAGGCGGCAGCGTTGAGCCCTTAGACACGTCTATT
CCTGACAATCCGCCTCAGTCGTCTCCTCCGCTGCGTACGCTCTTGGCGCC
TCTGGTTCTGGACAACTGGACTGAAGAACATAATGAACATCATCTGTTGT
ATCACCAACATGCAGGCTTCCGCCTCTCCCGCCATCTTGATTCAAAATTG
GAACTTTTAAGACGCCAGAACGGGTGAAAAATATCTTAACAAACGCCTTA
ACAATCGATCGGATCGAAAAAATTTCGATCCTGTTCTATCCGACGTAAAT
CGAACAGAACGCGTCTTCTATTTGGGTCATTGGGTCATCTGCGGTCATAT
GCAAGTTTCCACTGAAACCGGTTAGTTTCAATGTTATCTCGTATCATAAA
AAAACAAACTTGTCAACGCAAACGTGCTGATGTTCCCGCCCGCGATGTGT
CAAAGGTCGCAATAGGTCACACTAGGTCACTACACTTTCGTGGCAATAAG
GAACAGCAGGTGTCCTGCTAGGCTTCCAGTCATTGAGTGTAAAGTGGACG
CGAATTTGTAGTCTACTACAGTAGTAGACTACAATGTGTAGTAATACAGT
TTCATTGAACAAGTGTAAATTGGGCCTTAGTTTATTTAGAAACTGTTGTT
GAATTCTGAGCCTGTGACATCACTATCACTATCATTGGAATATACATAGT
ATTTGCACCTCCATATACTGGATACATCAGAATTAGTGAAATGATTACCT
ATTTTGACCAATGCAAAATTCGTTCATACGTTTTAATTTGGCTGGTTGTA
ATGCTAACATGTTTTAGAACATGTATTCTATAACAGGTGTTTGAAATGTC
ACAAGAACTGACATTTACTTTGTATAGCAAGGATTCTGGACATTATTGTT
TGAACAAGAATAACTTAGCTACATGTTTCTATTTGTGCTTATCTGTTTTT
GATCTTTCTGGAAATTTACAATTGGCGTCCATTGTTTTTTTCAGCCTTAT
TCAGTAAGGGAAAAGGACAGATCCTGCGAGTCAGCGCAGCGCTTTGGCTT
TTGTTTCACGCCGTTGACAAGCCGGACAAGGTTTCCAACTCTTTAGACAG
CGGGCTTAGTCTTCCAGAGCGAGTAATCCCAGAGCGAGTCGTCTCCGCTG
CTGTGGCCGTTGTGACTTATAGCATACATCAAACCGGCCTTCTGCACGGC
CGAAGACATAATGAGGATGCCGGGACGGTCGACAACTCCACAACTGACGT
GCCAAGAAAGCCAGCTTCTACAACTGACGTGCCACACCTTGAGTCAGCTT
CAACGTCTCGGCGAACCACAAACTTCGGGGGTCAGACGCTGTCGGGAGCA
TCTTATTGGTTCCAGGATGAGTCCTGTCAGTAAAAATCTTCTGACGAAAC
GCTTTTTCAAGACCAGAGGGAAGAAGGAAGTTGCAGACACCATGCTTGCA
ATGCAAGATCAACATCTGGGAGAGGTGAAGACCCTATCGCACCGCGGAGG
ACAGGTGAGGTGTTAAACAGTATCTTTTAACTAAATTATTTGTGCGCTTC
CGAACTATGTAAATAATACGAACGTAAAAACCAAACTGTTTTGGAACTAA
AGGTTATTTAGGTCAAAAGAACATGCTGTTATTCTATACCATAGTCATGG
AATCATTGTCTACATTCATTTTACAGTATCTAATTACTTATTTAACGAAT
TCACATTCTTAATTTATCTGCACTTCTACATTTAATGAATATAAAATTTT
AAATAAAGAGTTTATAGAAGCTTTTTGTCTATGAGGCTAATTGTAAGTAA
ATGTCACGGTTAAATGTAACACATATGAACAATAGTATTCGACACATGCT
TTTCGCAGCAAAGATTCCAAAGCATTTTCATATCCATGAGACATTGGCAA
AATCTTATGATATCTACATACTCTTCAAAACGCATCCCTTACTTTCATCA
TATAAGACAAGGGACACAGAAAAAAAAACTTTGGGAAAATTGGTTCTTAA
GTGGTGTCGTGGTGGCGTACTGGCAGGGTATTTGGACTCAGAACCCATTG
GTACCGGGTTCAAATCCGGGGTTCACTGATTTATCCCGTTGACGTTGTGC
CCAAGGGAAAGGCACTTTACACTACTTTCCCCACTTCACTCGGGTGAAAA
TGAGTACCTAGCTTTGGTTAGGGACGTCCCTTGGATAGGATGCTAAATGG
AGGTCCCGTGTTTGAGGAGAGCCACACCTCAAGCACGTAAAAGAACTCAA
CACACTTTTCAAAAAGAGTAGGTTCTTCCTGGATCATATAAATCTGTCCA
AATATGCGGCTTGTACTCTTCAGTACAAACCTGGTGTGTTAAGCCTTGAT
GCGGTTTACCGGGGTATGTAATACAAACAATAAAGGCAAAAAGGTGGAAG
AAGATCAACCAGGACAATGAAACAGCTGCTCAACTAACATAAAAACATTA
TGACTGTTTAGTTTGTTTTCCCTGTTTGGTGACATGTTCTACCTACAACT
AAGTCTTTTTATTCTACCTACAACGAGAACAAAGTCTTTTTGTAGCCAAG
TTGGTCATGATGTATATTATTTTGATGTGTAAAAAAAAATATGCTGTAGA
TTTGATAGATTAGCTTGAAAATGTTGTCTTGCTAAGAAGTAGTTTGCTGC
TTGAAAAGTAAACTTCATGAACGATACATTTATGTATTTATTGAGTATCA
CTTAATAATTCCAGACTCCCAGCAAAACATCCTCAAAAAAACAAAACTGA
GGCAAGAAGACCAATGATTGAAATGTACAGGAAACTTCTGTACAGGACAT
CCCAGCTCCAGAAACACGATGGAAGCTGTTTAGGAGAGCTGCCCAGCGGC
TCTTCCGCCATTGCCTTTAAGGGTGCTGCACTCGCAAGGCTGACCACGAA
TAGTAAGCAAACACAGTTCTATCTTTGAGACAGACATAAACTGATTTACA
ATGACATAGTACAAAGAAAACATTGAAGCACACAGAACAAAACACGTTAA
CACTTTGAGATCAGCTAGAAGTTCAACTGTATGTGAATTATATTTTATTT
TTGACACAGCCATCATATTACACGATAGTTTTACTTTTGTTCAAAATTTG
AGATTTTACAATATTTCAATATAATGGTACAGTAGGATGGATATTACAGG
ATATATGAATTCTTTTTATTGATCTTGGGAGCAAAAATAAAATGATGCCT
TTTTTCATGTTGCATATGTTGGGGAATCAGCGTCAGCTGTAAGATCTAGT
TAGTAGAGTCAAAGTACAGTAATTCATTTTACAGGATTTTTCACGGTGAT
TGTAAGTTCACGGTGTAGTGAGGTCACCATGAAAACAATGAAAAATAAAG
TTACAGTGAAAGAAACAACACCTCACAACTGGTGTCTAGATCAACAGCGG
ACCCACTGTCACAAAGGGAAGATAACATCTTGACAGCCCTCGTGAGGAGA
AAACTGGCGTCGGTACAAGACATGATGATTATAAGGTTCCGGGCAGGTAA
TCTAATTTACTTACTGTAAGGTAATGATAAATAACCGTCAACTGCTCATT
GTTTTAATATATCACTCTTAACTGCAGATAAACGTTATCACTTGCACATT
GACATTGTATTCTTATTGCTAAGCACTATGTATATCTATGTTTAACTCAA
AATGTCAAACCAAAGTTTGCGCTCTTTAGAAACCGAATTAAAACATCATA
GAAATAGATAAACAATTGCAATATCTAAAAGCATTGATGTAAATTCAAGC
AACATTACAATTACTTTAGATTTTATATGTATTTTTATGTATTGAGTATG
TTGATAAATCAAAGTAAAAAAAATATATAAAGAGCAATTGTGACTAGATT
TCTTGCTATTTCATAGAAAAACTAGGAAAAACTGTTACAGTCCGCAAATT
TTGAAGGGACTGTACAATCCGTAGTAAACATGTTCACACAGGATATCATC
TTATCTGCGATACCAAATGTCTGTTATTTTGTGTCAACATCATTAGGGAG
CATCATCTAGCATACTG Coding sequence (CDS) from alignment at Sc0000029:2297081..2301897- >transcript:BL78783_cuf1 ID=transcript:BL78783_cuf1|Name=transcript:BL78783_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1512bp|location=Sequence derived from alignment at Sc0000029:2297081..2301897- (Branchiostoma lanceolatum)
CGTTGTGTTTCTTTTGAGGAACAACAAATGGCGGAAGTCCGTAGCCGACC
CTGGAGTAGTGACGAGACGAGGTGTCTCATCAGTTTGTGGGCAGATCACG
CAGTTCAGGTCAAGCTAAGGTCGTTCAGGAATAAGGAGGGATATGCATTG
CTGGAAAAAGCAATGAGGGAGGAGGGCTACCCGAGGTCTTCAAAACAAAT
CAAGGTCAAGCTTCGTGACTTGAAAGTGAAGTATAGGAAGGCAAAACAGA
ACAACAACAGGAGTGGGAGTGCGAGAGCTTCATGTCCATTTTTCGAGGAG
CTGGATGCAGTTTTGTGGACCCGCCCTTCTACGAATCCAACCTTCCTATT
AGAGACTACAAACCAAGCCTTATTCAGTAAGGGAAAAGGACAGATCCTGC
GAGTCAGCGCAGCGCTTTGGCTTTTGTTTCACGCCGTTGACAAGCCGGAC
AAGGTTTCCAACTCTTTAGACAGCGGGCTTAGTCTTCCAGAGCGAGTAAT
CCCAGAGCGAGTCGTCTCCGCTGCTGTGGCCGTTGTGACTTATAGCATAC
ATCAAACCGGCCTTCTGCACGGCCGAAGACATAATGAGGATGCCGGGACG
GTCGACAACTCCACAACTGACGTGCCAAGAAAGCCAGCTTCTACAACTGA
CGTGCCACACCTTGAGTCAGCTTCAACGTCTCGGCGAACCACAAACTTCG
GGGGTCAGACGCTGTCGGGAGCATCTTATTGGTTCCAGGATGAGTCCTGT
CAGTAACGTTGTGTTTCTTTTGAGGAACAACAAATGGCGGAAGTCCGTAG
CCGACCCTGGAGTAGTGACGAGACGAGGTGTCTCATCAGTTTGTGGGCAG
ATCACGCAGTTCAGGTCAAGCTAAGGTCGTTCAGGAATAAGGAGGGATAT
GCATTGCTGGAAAAAGCAATGAGGGAGGAGGGCTACCCGAGGTCTTCAAA
ACAAATCAAGGTCAAGCTTCGTGACTTGAAAGTGAAGTATAGGAAGGCAA
AACAGAACAACAACAGGAGTGGGAGTGCGAGAGCTTCATGTCCATTTTTC
GAGGAGCTGGATGCAGTTTTGTGGACCCGCCCTTCTACGAATCCAACCTT
CCTATTAGAGACTACAAACCAAGCCTTATTCAGTAAGGGAAAAGGACAGA
TCCTGCGAGTCAGCGCAGCGCTTTGGCTTTTGTTTCACGCCGTTGACAAG
CCGGACAAGGTTTCCAACTCTTTAGACAGCGGGCTTAGTCTTCCAGAGCG
AGTAATCCCAGAGCGAGTCGTCTCCGCTGCTGTGGCCGTTGTGACTTATA
GCATACATCAAACCGGCCTTCTGCACGGCCGAAGACATAATGAGGATGCC
GGGACGGTCGACAACTCCACAACTGACGTGCCAAGAAAGCCAGCTTCTAC
AACTGACGTGCCACACCTTGAGTCAGCTTCAACGTCTCGGCGAACCACAA
ACTTCGGGGGTCAGACGCTGTCGGGAGCATCTTATTGGTTCCAGGATGAG
TCCTGTCAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000029 | genome | Sc0000029:2297081..2301897 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78783_cuf1 |
| Biotype | protein_coding |
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