transcript:BL78737_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL78737_cuf0
Unique Nametranscript:BL78737_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL78737_cuf0

>transcript:BL78737_cuf0-protein ID=transcript:BL78737_cuf0-protein|Name=transcript:BL78737_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=122bp
MLPSADPKPFWSSLETDTAKSARNVFSTLSACWAACCCCSVVASLRPSLP
CPGWHTNNNSKKHVRTSSSIKFPQPEQASATRSRSAKSWSALGKPARVAL
PEPSSNTGEIPPDTQNAKHNKM
Run BLAST on NCBI

mRNA from alignment at Sc0000008:3607129..3608001-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL78737_cuf0 ID=transcript:BL78737_cuf0|Name=transcript:BL78737_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=873bp|location=Sequence derived from alignment at Sc0000008:3607129..3608001- (Branchiostoma lanceolatum)
AAACGCCAAACAACAAAATGTGACCGAACAAAAGAACAGACAACACGGCG
CCCCACGTGCAAACATCTCTCTGCGAATTACCATTACACACGCGGGAGGC
CTAAACCACGCCAAATGTCAACTAAAAAAACACACTAGGTACACAACATG
TTACCCTCTGCGGACCCCAAACCTTTCTGGAGCAGCTTAGAAACTGACAC
AGCTAAATCCGCACGTAACGTCTTCTCCACGTTATCTGCTTGCTGGGCTG
CTTGCTGCTGCTGCTCCGTGGTGGCCTCGCTCCGTCCCTCGTTGCCTTGC
CCGGGTTGGCATACTAATAATAACAGCAAGAAACATGTCAGGACAAGTTC
CTCAATCAAATTCCCCCAACCCGAGCAAGCCTCCGCCACCCGAAGCAGAT
CGGCTAAGTCGTGGAGCGCTTTGGGAAAACCTGCCCGAGTCGCCCTCCCT
GAGCCGAGCTCGAACACTGGAGAAATCCCACCCGACACGCAAAACGCCAA
ACACAACAAAATGTGACTGAACAAAAGAACAGAAAGCACGGCGGCCCACG
TGCAAATATCTCTCTGCGAATTACAATTACACACGCGGGAGGCCTAAACC
ACGCCAAATGTCAACTAAAAACCACTAGGTACACAAAATGTTACCCTCAG
CAACACCCCAAACCTTTCCGGAGCAGCTTAGAAGCTGAAACAGCTAGTCA
GCTAGTTCCACACGTCACGTCTTCGCCACGTTGTCTTCACGAGCGGACCT
AGGCCTGCCTGCTCCTCACGGTGTTGGGGACGTCTCCGAATAAAGAAGGG
CCGTGTGGACAGGCACACCTGCCTTATATAGAGTTATTTAAATTAGGATA
TTATGGCTGACCAATCATGGCGC

Coding sequence (CDS) from alignment at Sc0000008:3607129..3608001-

>transcript:BL78737_cuf0 ID=transcript:BL78737_cuf0|Name=transcript:BL78737_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=369bp|location=Sequence derived from alignment at Sc0000008:3607129..3608001- (Branchiostoma lanceolatum)
ATGTTACCCTCTGCGGACCCCAAACCTTTCTGGAGCAGCTTAGAAACTGA
CACAGCTAAATCCGCACGTAACGTCTTCTCCACGTTATCTGCTTGCTGGG
CTGCTTGCTGCTGCTGCTCCGTGGTGGCCTCGCTCCGTCCCTCGTTGCCT
TGCCCGGGTTGGCATACTAATAATAACAGCAAGAAACATGTCAGGACAAG
TTCCTCAATCAAATTCCCCCAACCCGAGCAAGCCTCCGCCACCCGAAGCA
GATCGGCTAAGTCGTGGAGCGCTTTGGGAAAACCTGCCCGAGTCGCCCTC
CCTGAGCCGAGCTCGAACACTGGAGAAATCCCACCCGACACGCAAAACGC
CAAACACAACAAAATGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL78737gene:BL78737Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL78737_cuf0-E1BL78737_cuf0-E1-1564476830-84968Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL78737_cuf0transcript:BL78737_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000008genomeSc0000008:3607129..3608001 -
Properties
Property NameValue
Transcript idBL78737_cuf0
Biotypeprotein_coding