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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78736_cuf0 >transcript:BL78736_cuf0-protein ID=transcript:BL78736_cuf0-protein|Name=transcript:BL78736_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=333bp
VDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDVVLDRIRK
LADSCTGLQGFLIFHSFGGGTGSGFTSLLMERLSTDYGKKSKLEFAIYPA
PQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIFDICRRNLDIDRPTY
TNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATFAP
VISAEKAYHEQLSIGEITNACFEPNNQMVKCDPRHGKYMACCLLFRGDVV
PKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRA
VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW Run BLAST on NCBI mRNA from alignment at Sc0000008:3641952..3645814- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78736_cuf0 ID=transcript:BL78736_cuf0|Name=transcript:BL78736_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3863bp|location=Sequence derived from alignment at Sc0000008:3641952..3645814- (Branchiostoma lanceolatum)
TGTAGATGAGGTCCGCACCGGTACATACCGCCAGCTGTTCCACCCTGAGC
AGCTCATCACTGGTAAGGAGGATGCCGCCAACAACTACGCCCGCGGCCAC
TACACCGTCGGCAAGGAGATCATCGACGTGGTCCTGGACCGCATCCGCAA
GCTGGCCGATTCCTGTACTGGTCTCCAGGGGTTCCTCATCTTCCACTCCT
TTGGCGGTGGCACAGGTTTGTAATGTCTGTTATGTTTAGCTTATGTATGT
ATTCTTTATTGCTTTTAGACTTCTTTTGATTGTAAAAACCAATGAAGGCT
GCTACTGTATGTTATGTCTTGCTCTCTCTCTCTCTCTCTATCCAGTTTTT
CGTCTTTTGTTCCCCATCATCTGGGGGTTAGACGTGCTTACACATGGATG
GGGGAGCCCCAGAACTCTTCATCAAGTGCAAGTCTTTTTTGTAGCAAGAG
TTTTTACGGCTGGATGCCCTTCCTAACGCCAACCCAAACCCTATTGCTGG
GCTTAGGATATGGGAAATACGTGTTAAGTGCCTTTCCCAAGGGCACAACG
TCTGGGTGCATGTCCGGACATGTCTGGGTACTCCACTGGGGATTGAACCT
GGGTCTTATTGGTTCATAGCCGGATGCTCTGCCACTGTGCNGGACATGTC
TGGGTCTGGAAACTGGGGATTGAACCTGGGTCTTATTGGTTCATAGCCAG
ATGCTCTGCCACTGTGCCACACAGACGCCACGTAATAAACCCTCTGTTCA
TTCACAGGGTCGGGCTTCACTTCCCTGTTGATGGAACGTCTGTCTACGGA
CTACGGCAAGAAGTCCAAGTTGGAGTTTGCCATCTACCCTGCGCCTCAGA
TATCCACCGCCGTGGTCGAACCCTACAACTCCATCCTGACCACCCATACC
ACCCTAGAGCACTCCGACTGCGCCTTCATGGTCGACAATGAGGCTATCTT
CGACATCTGCCGCCGTAACCTGGACATTGATCGTCCCACCTACACCAACC
TGAACCGCCTGATTGGTCAAATAGTCTCGTCCATCACTGCATCCCTGCGG
TTCGACGGCGCCCTGAACGTGGATCTCACCGAGTTCCAGACCAACCTGGT
GCCATACCCGCGTATCCACTTCCCCCTGGCCACCTTCGCTCCGGTCATCT
CTGCCGAGAAGGCCTACCATGAGCAGCTGTCCATTGGCGAGATCACCAAT
GCCTGCTTCGAGCCAAACAACCAGATGGTGAAGTGCGATCCCCGTCACGG
CAAGTATATGGCCTGCTGTCTGCTGTTCCGAGGCGATGTGGTGCCCAAGG
ATGTCAATGCTGCCATCGCCACCATCAAGACCAAGCGCACCATCCAGTTT
GTTGACTGGTGCCCCACCGGCTTCAAGGTTGGCATCAACTACCAGCCACC
CACCGTGGTGCCTGGTGGAGACCTGGCCAGGGTGCAGCGTGCTGTGTGCA
TGTTGAGCAACACCACCGCCATCGCCGAGGCCTGGGCCCGACTGGACCAC
AAGTTTGACCTGATGTACGCCAAGCGCGCCTTCGTGCACTGGTGAGGAAT
GCTGTTTTTGTCAGCAAAATATAGTACAGTCATACTGCCCCAAAAGATAA
TTCAGGTGACGGACAGTTACTGGTCTATTTTGTCACTGTAGACAGAATAT
CTAAATGCTATGGCCAACGATAAAAACTATCTAAGGGACATGTCACCAAA
AAGTGGTCCCATTGGTTAGGTGGTCCTTATGTAGAGGTTGGTCACTTTTG
AATATGAGGACAGGTTGTGAGATTAAGATTTTTTAAATATTTCAATGTAT
GAGTCATAGTTCAAAAAGCTACACCTCCACTTTGATTGAGTTTTTAAGAT
CTCACTGAGGAAAATGGCATCCCAAAATAGTCTAGTCTGTGATGTGTCCT
ATTGGGGTAAATTTGTACACAGCTTTCAGCACCAGGGACAGCCCCACTCT
TAATGTTTTGATAACTCTTCCATCAGCGATTGCTGCTATTTCATGACCAC
ATTGTTTGTGATTTTTGAAGATCCTTCTTAATTCATTTCTTTGGCTCTTG
GATACTTCAAGGTCAAAATTAAGCAAGAAGGCAGGAAGGAAAACTTTCTT
TTTACTATTCATTCCCAAAAACGGAGTGTACCCGGGCATAAATCTGTCCC
TTAAGATCTGTTATCATTTAATTTTTCTAGTTACCTTCATGAAATGTCAT
GGAGGTTATATTTTCAGCAGAGTTTGTGTGTGTGTTGGTGTGTGTGTGTC
TGTCTGACTGTTAATGAACAAGATAACTCGAGAATGGCTGAATAGATTGG
TTTCATACTTGGTGTGATGGTTGGGTGTGTCAAAAACTGGAAAAGGTTAG
ATTTTGGGCCCCCTATCGGCTCCCCTAGTTTGACATATTATTTAAAATCC
AAAACCAATGAATTTAAGTGGCACTGCCTAACCCCCAGACTATTCTCTTG
TCGTGCAGGTATGTGGGTGAGGGGATGGAGGAGGGAGAGTTCTCTGAGGC
CCGTGAGGACCTGGCAGCGCTAGAGAAGGACTATGAGGAGGTTGGGATCG
ACTCCCAATCTGATGAAGAGGAAGAAGACGGGGAGGAGTACTAGGCCTTT
GAACTGCTCCCAATAAATCATTGTATCATGCATGCACAGTAAAAAATGCA
ACCAATTTTGATGTTTTGATCATGAAGTTTCCTATGATTTACTGTTAAAA
CGCTTTGGCACAAGGGACGAAGAGTCTGTTGCAGGACAAGTACAAAACCG
CATGGTCGCTTGACGGAACTGAGACCCGGGGCGCACCAGGCCGCGTGCTC
CCGGGCGCGTCTAATCAAACTATTTGGTCTCCGCCCAAATGTATCCTTTG
GCACAATATGGTTGTTCTTGATATTGATTGAAAGCCTATGATAAAATCTT
ACTAATTGTAATTTTTTAGACCATTTGGATGATTTCATTGTATTTATTGT
TCTTTTAATGTTGAGAAGCTAATTGTTATGCTTGCAATCATGTAATGATA
TGACGGCCTTTGTAGATTGATCTAAAAGGAATGGGCTCCTTGTTTATTTC
AATTCTTTGTTAGACATGTAAGATGTTATGGATAACCTTTCTTGACAAAA
GAGGCATCATTATTCAGCTGATTTGCTTGTATTTGGATTTGGATTTTATT
GGAATTGCAACAGTGCAATACACGTGGGACACAGGCAGCTATTGCTGATG
TCGTGACCAACACACATAATATAGCCGTTTTTTTTACACTTGGCTGGAGT
GGGGAAAGTCGTGTCAAGTGCCTTTTTCCCAAGGGCAGAAGATCGGCGGC
ATTAGGGGATTCGAACCCGGGACCCTTGGGTTCTGGGCCAAAATCCCTGC
TGTTACGTCACACTGACCCCGCTTGTAATGACATCAGAAGATAGAATATT
TTCCTTGTTTATTGAAATGGAAAATCTGTTGATGGCATGTTATATTAAAG
TGCACAAAAAGCTGTTGCAAACCTTAACCTAGCCTGCTGGTTATTACATA
GAGTATATGACTGGTGTAATTTTTGTCTTTATAGGCAACATTTACGTATA
CCCATTTATTGTTGGTTGATAAAGAAGATACTGTAATAGCTACAAATGGG
CACAGTGCAAAGTGCACACCCTTACTTCTCATTTCTTTATCGCTTATGGA
GTGATACCTAAACTAAGCCATAAGTGTCTTGGATATTGATATGCAATCTT
TGTAACCTGAGTAGAGTTCGCTGAGTCCTTTGATCATGAAGGGGAAACTA
AGGCATCAGTCTACTTTGAGAGCCACACCTTAACCTTTAGTGCACTGAAG
TAGCCATTTGGCACCCAAGAAAGTTTAAGTATATTAACCTTCTCCCTGCT
GCCTAACTGAGTA Coding sequence (CDS) from alignment at Sc0000008:3641952..3645814- >transcript:BL78736_cuf0 ID=transcript:BL78736_cuf0|Name=transcript:BL78736_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2004bp|location=Sequence derived from alignment at Sc0000008:3641952..3645814- (Branchiostoma lanceolatum)
GTAGATGAGGTCCGCACCGGTACATACCGCCAGCTGTTCCACCCTGAGCA
GCTCATCACTGGTAAGGAGGATGCCGCCAACAACTACGCCCGCGGCCACT
ACACCGTCGGCAAGGAGATCATCGACGTGGTCCTGGACCGCATCCGCAAG
CTGGCCGATTCCTGTACTGGTCTCCAGGGGTTCCTCATCTTCCACTCCTT
TGGCGGTGGCACAGGGTCGGGCTTCACTTCCCTGTTGATGGAACGTCTGT
CTACGGACTACGGCAAGAAGTCCAAGTTGGAGTTTGCCATCTACCCTGCG
CCTCAGATATCCACCGCCGTGGTCGAACCCTACAACTCCATCCTGACCAC
CCATACCACCCTAGAGCACTCCGACTGCGCCTTCATGGTCGACAATGAGG
CTATCTTCGACATCTGCCGCCGTAACCTGGACATTGATCGTCCCACCTAC
ACCAACCTGAACCGCCTGATTGGTCAAATAGTCTCGTCCATCACTGCATC
CCTGCGGTTCGACGGCGCCCTGAACGTGGATCTCACCGAGTTCCAGACCA
ACCTGGTGCCATACCCGCGTATCCACTTCCCCCTGGCCACCTTCGCTCCG
GTCATCTCTGCCGAGAAGGCCTACCATGAGCAGCTGTCCATTGGCGAGAT
CACCAATGCCTGCTTCGAGCCAAACAACCAGATGGTGAAGTGCGATCCCC
GTCACGGCAAGTATATGGCCTGCTGTCTGCTGTTCCGAGGCGATGTGGTG
CCCAAGGATGTCAATGCTGCCATCGCCACCATCAAGACCAAGCGCACCAT
CCAGTTTGTTGACTGGTGCCCCACCGGCTTCAAGGTTGGCATCAACTACC
AGCCACCCACCGTGGTGCCTGGTGGAGACCTGGCCAGGGTGCAGCGTGCT
GTGTGCATGTTGAGCAACACCACCGCCATCGCCGAGGCCTGGGCCCGACT
GGACCACAAGTTTGACCTGATGTACGCCAAGCGCGCCTTCGTGCACTGGT
GAGTAGATGAGGTCCGCACCGGTACATACCGCCAGCTGTTCCACCCTGAG
CAGCTCATCACTGGTAAGGAGGATGCCGCCAACAACTACGCCCGCGGCCA
CTACACCGTCGGCAAGGAGATCATCGACGTGGTCCTGGACCGCATCCGCA
AGCTGGCCGATTCCTGTACTGGTCTCCAGGGGTTCCTCATCTTCCACTCC
TTTGGCGGTGGCACAGGGTCGGGCTTCACTTCCCTGTTGATGGAACGTCT
GTCTACGGACTACGGCAAGAAGTCCAAGTTGGAGTTTGCCATCTACCCTG
CGCCTCAGATATCCACCGCCGTGGTCGAACCCTACAACTCCATCCTGACC
ACCCATACCACCCTAGAGCACTCCGACTGCGCCTTCATGGTCGACAATGA
GGCTATCTTCGACATCTGCCGCCGTAACCTGGACATTGATCGTCCCACCT
ACACCAACCTGAACCGCCTGATTGGTCAAATAGTCTCGTCCATCACTGCA
TCCCTGCGGTTCGACGGCGCCCTGAACGTGGATCTCACCGAGTTCCAGAC
CAACCTGGTGCCATACCCGCGTATCCACTTCCCCCTGGCCACCTTCGCTC
CGGTCATCTCTGCCGAGAAGGCCTACCATGAGCAGCTGTCCATTGGCGAG
ATCACCAATGCCTGCTTCGAGCCAAACAACCAGATGGTGAAGTGCGATCC
CCGTCACGGCAAGTATATGGCCTGCTGTCTGCTGTTCCGAGGCGATGTGG
TGCCCAAGGATGTCAATGCTGCCATCGCCACCATCAAGACCAAGCGCACC
ATCCAGTTTGTTGACTGGTGCCCCACCGGCTTCAAGGTTGGCATCAACTA
CCAGCCACCCACCGTGGTGCCTGGTGGAGACCTGGCCAGGGTGCAGCGTG
CTGTGTGCATGTTGAGCAACACCACCGCCATCGCCGAGGCCTGGGCCCGA
CTGGACCACAAGTTTGACCTGATGTACGCCAAGCGCGCCTTCGTGCACTG
GTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000008 | genome | Sc0000008:3641952..3645814 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78736_cuf0 |
| Biotype | protein_coding |
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