transcript:BL78645_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL78645_cuf0
Unique Nametranscript:BL78645_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL78645_cuf0

>transcript:BL78645_cuf0-protein ID=transcript:BL78645_cuf0-protein|Name=transcript:BL78645_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=245bp
ASKAELGVFPVDLDVSIRIVKYWLRLRQLDPLTHPLQVDALLYQQSSQVN
SNKKNWLQHVKDVLDNSGYSFIWNANNLDLDIQHICTLLRKRLTDIYIQS
FLYKLSIDDSKLRFYRNVKTEYSMEKYLSNKDFEQRSAVCKIRISAHPLE
IEKGRYKKLPAHERMCKFCTMNAVENEIHFICQCPLYEAERNDLYKTASV
NSPSFHHLNSLQKSISLLKSTNPLTMKNVGLFIFHCLQKRSQTQP
Run BLAST on NCBI

mRNA from alignment at Sc0000248:6381..7151-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL78645_cuf0 ID=transcript:BL78645_cuf0|Name=transcript:BL78645_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=771bp|location=Sequence derived from alignment at Sc0000248:6381..7151- (Branchiostoma lanceolatum)
GCAAGTAAAGCAGAGCTTGGAGTGTTCCCGGTAGATTTAGATGTGTCAAT
CCGCATAGTTAAGTATTGGTTGCGCCTCAGACAACTCGATCCTTTGACTC
ATCCTTTACAAGTAGATGCTCTATTGTATCAACAGTCTTCCCAAGTGAAT
AGCAACAAGAAAAACTGGTTACAACATGTGAAAGATGTACTTGACAATAG
CGGATACTCCTTTATCTGGAACGCCAACAATCTCGATCTAGACATACAAC
ATATATGTACATTGTTAAGAAAAAGGCTGACCGACATTTACATTCAAAGT
TTTCTTTATAAATTATCTATCGATGACAGTAAGTTAAGATTTTATAGGAA
TGTTAAAACAGAATACTCAATGGAAAAATATCTTTCCAACAAAGATTTTG
AACAACGGTCAGCTGTGTGTAAGATACGAATAAGCGCACATCCACTAGAA
ATAGAAAAGGGTAGATATAAAAAGCTGCCCGCTCACGAGAGAATGTGTAA
GTTTTGTACAATGAACGCAGTGGAAAATGAAATACATTTCATTTGCCAAT
GCCCTCTATATGAGGCCGAAAGAAACGATTTATATAAAACAGCTTCCGTT
AATTCTCCTAGCTTTCACCATTTGAATAGCTTACAAAAATCCATATCACT
ACTAAAATCAACAAACCCACTTACGATGAAAAACGTGGGTCTCTTCATTT
TCCACTGCCTTCAAAAAAGAAGTCAAACCCAACCATAGTCAACCTTAGTT
AACTTAGAACTTTGACAGTAG

Coding sequence (CDS) from alignment at Sc0000248:6381..7151-

>transcript:BL78645_cuf0 ID=transcript:BL78645_cuf0|Name=transcript:BL78645_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=738bp|location=Sequence derived from alignment at Sc0000248:6381..7151- (Branchiostoma lanceolatum)
GCAAGTAAAGCAGAGCTTGGAGTGTTCCCGGTAGATTTAGATGTGTCAAT
CCGCATAGTTAAGTATTGGTTGCGCCTCAGACAACTCGATCCTTTGACTC
ATCCTTTACAAGTAGATGCTCTATTGTATCAACAGTCTTCCCAAGTGAAT
AGCAACAAGAAAAACTGGTTACAACATGTGAAAGATGTACTTGACAATAG
CGGATACTCCTTTATCTGGAACGCCAACAATCTCGATCTAGACATACAAC
ATATATGTACATTGTTAAGAAAAAGGCTGACCGACATTTACATTCAAAGT
TTTCTTTATAAATTATCTATCGATGACAGTAAGTTAAGATTTTATAGGAA
TGTTAAAACAGAATACTCAATGGAAAAATATCTTTCCAACAAAGATTTTG
AACAACGGTCAGCTGTGTGTAAGATACGAATAAGCGCACATCCACTAGAA
ATAGAAAAGGGTAGATATAAAAAGCTGCCCGCTCACGAGAGAATGTGTAA
GTTTTGTACAATGAACGCAGTGGAAAATGAAATACATTTCATTTGCCAAT
GCCCTCTATATGAGGCCGAAAGAAACGATTTATATAAAACAGCTTCCGTT
AATTCTCCTAGCTTTCACCATTTGAATAGCTTACAAAAATCCATATCACT
ACTAAAATCAACAAACCCACTTACGATGAAAAACGTGGGTCTCTTCATTT
TCCACTGCCTTCAAAAAAGAAGTCAAACCCAACCATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL78645gene:BL78645Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL78645_cuf0-E1BL78645_cuf0-E1-1564476830-407860Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL78645_cuf0transcript:BL78645_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000248genomeSc0000248:6381..7151 -
Properties
Property NameValue
Transcript idBL78645_cuf0
Biotypeprotein_coding