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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78614_cuf0 >transcript:BL78614_cuf0-protein ID=transcript:BL78614_cuf0-protein|Name=transcript:BL78614_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=671bp
GCGRSMEELYQEHPGIETSSMEGQAIVMDRQQVWEEQASCEVTFDGNLRN
SDNTSSSHVEQVESHMPELSTEKPRIGGECGAGTRNREALGLHMRTHTGE
KPYKCDHCDYSSMLKSHLDIHLTNHTGEKPYMCSCGFGTHYRQVLQKHMG
IHTAAGKSNKSNQIKSTHTGKKPYKCDQCNYSAAKKSSLNLHLAIHTGDK
PYMCGECGHRTRHLNSLKQHMRTHTGEKPYKCDQCDYSAVTKSGLDYHLI
AKHTGKKPYKCRECGYRSVLKTALSQHMKTHTVRVNAYKCDHCDYSATRK
ASLDLHLLIAKHTSEKPYTCGECGYRAAGKNDLSLHLKRHRGEKFNTCDQ
SDYSAAQRSQSDIHPANHTSETPFTCSDCGYRAHHKTTLIKHMKTHLSTG
EKPYACEVCGYRAVLKYNLSRHMKTHVKPYKCDQCDYSAAQKSHLDKHLV
KHTGEISYMCSECGYRTHRKSVLSSHMRTHKNEKPFKCEECGYRATKKDA
LSKHMRTHAGDKPYMCDQCDYSATTTSGLVRHPAKHTGEKPYMCDHCDYS
AAQKSDLVTHLAKHTDENSDQMESQMPKLNTEKFYMCGTCGFRTHKMSHL
SRHVRTHTADKAFKCEHCDYSATLRCYLEDHITEHTDEKPYKCEKCGYRA
NRKSDLRAHFRTHTAEKTEQL Run BLAST on NCBI mRNA from alignment at Sc0000004:6323171..6325762+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78614_cuf0 ID=transcript:BL78614_cuf0|Name=transcript:BL78614_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2592bp|location=Sequence derived from alignment at Sc0000004:6323171..6325762+ (Branchiostoma lanceolatum)
CTGGTTGTGGAAGGTCTATGGAAGAACTGTATCAAGAACATCCTGAGAAC
AGGACAAGCAGCAGCAAGGGCCAGACAACAGACATACAGCAGGACAGGGA
AGAGCAAATTTCATGCCAAAAAACGTTTCATGTAAAGGTTGAGAAGACTG
ACTCCTCATCACATGTAGATCCTGGTTGTCTAAGTTCAATGGAAGAACTG
TATCAAGAACATCCTGAGAACGGGACAAGCAGCAGCAAGGGCCAGACAAC
AGACATGGGCAGACATCCGGACATGGAAGAACAAACTTCATGCGAGGAAA
CGTTTCATGTAAAGGTTGAGAAAACTGACTCCTGGTCACATATAGATCAT
GGTTGTGGAAGTTCAATGGAAGAACTGTACCAAGAGCATCCTGGAAATGG
GACATGCAGCAGGGAGGGCCAGACAACAGACATGGGCAGGCAGCCGGACT
GGGAAGAACAAGCTTCATGCGAGGAAACGTTTTATTGGGAGGTGGAGAAG
ACTGACTCCTCATCACATATAAATCCTGGTTGTAGACGTTCTATGGAAGA
ACTGTATCAACAACATCCCGGGATTGAAACAAGCAGCATGGAGGGCCAGG
CAATAGTCATGGACAGGCAGCAGGTCTGGGAAGAACAAGCTTCATGCGAG
GTAACTTTTGATGGGAACCTTAGGAATTCTGACAATACATCATCATCACA
TGTAGAACAGGTCGAAAGTCATATGCCTGAACTCAGTACAGAGAAACCCC
GCATCGGTGGAGAATGCGGGGCTGGAACACGCAATAGGGAAGCCCTTGGC
TTACACATGAGAACCCATACAGGAGAAAAGCCCTACAAGTGTGATCACTG
TGACTATTCGTCAATGCTGAAGTCCCATTTAGACATTCATTTGACAAACC
ATACTGGTGAGAAACCCTACATGTGTTCATGCGGGTTCGGGACACACTAT
AGACAAGTCCTGCAAAAACACATGGGGATCCATACAGCTGCAGGCAAGTC
AAATAAATCAAATCAAATCAAATCAACCCATACAGGAAAAAAGCCCTACA
AGTGTGATCAGTGCAACTATTCTGCAGCAAAGAAATCCAGTTTGAATCTC
CATCTAGCAATACACACTGGTGATAAACCCTACATGTGTGGGGAGTGTGG
GCACAGGACACGTCACCTGAATTCTTTGAAACAACACATGAGAACTCATA
CAGGAGAAAAGCCCTACAAGTGTGACCAGTGTGACTATTCTGCTGTGACT
AAAAGTGGTTTGGACTACCACCTAATAGCGAAACATACTGGAAAGAAACC
CTACAAGTGTAGGGAGTGTGGATACAGGTCAGTTCTAAAGACTGCCTTAT
CCCAGCACATGAAAACTCATACAGTACGAGTAAATGCCTACAAGTGTGAT
CACTGTGACTATTCTGCAACGCGGAAAGCCAGTCTGGACCTTCATCTATT
AATAGCAAAACACACTAGTGAGAAGCCCTACACGTGTGGGGAGTGTGGGT
ACAGGGCAGCTGGAAAGAATGACCTTTCCCTACATTTAAAAAGACACAGA
GGAGAAAAGTTCAACACGTGCGACCAGAGTGACTATTCTGCAGCACAGAG
ATCCCAATCGGACATTCATCCAGCAAATCACACCAGTGAGACACCCTTCA
CGTGTAGTGATTGTGGGTACAGGGCACACCATAAGACTACCCTCATCAAG
CACATGAAAACTCACCTCTCTACTGGAGAAAAACCCTACGCGTGTGAGGT
GTGTGGATACAGGGCAGTTCTAAAGTATAACTTATCCAGGCACATGAAAA
CTCATGTAAAGCCGTACAAGTGTGACCAATGCGACTATTCTGCTGCACAG
AAATCCCATTTAGATAAACATCTAGTAAAACATACTGGCGAGATATCCTA
CATGTGTAGTGAGTGTGGATACAGGACACATCGGAAGTCTGTACTATCCA
GTCATATGAGAACTCATAAAAATGAAAAGCCATTCAAGTGTGAGGAGTGT
GGGTACAGGGCAACCAAGAAGGATGCCCTATCAAAACATATGAGAACTCA
TGCAGGAGATAAACCCTACATGTGTGATCAGTGCGACTATTCTGCCACGA
CGACATCAGGCTTGGTCCGCCATCCTGCAAAACACACCGGCGAGAAACCT
TACATGTGTGACCATTGCGACTATTCTGCTGCACAGAAATCCGATTTGGT
CACCCATTTAGCAAAACATACTGATGAGAATTCCGATCAAATGGAAAGTC
AGATGCCAAAACTTAATACTGAAAAGTTCTACATGTGTGGGACGTGTGGG
TTCAGGACACATAAAATGTCTCACCTATCCAGGCACGTGAGAACTCATAC
AGCAGATAAAGCCTTCAAGTGTGAGCATTGTGATTATTCTGCAACACTGA
GATGTTATTTGGAGGACCACATTACAGAACATACTGACGAAAAACCCTAC
AAATGTGAGAAATGTGGGTACAGGGCAAACAGAAAAAGTGACCTGCGCGC
ACATTTCAGAACGCATACAGCAGAAAAAACTGAACAACTGTGACAGCTTT
ATTTGACTATTCTGCAGTAGATAAATCCACATTGGACGTCAA Coding sequence (CDS) from alignment at Sc0000004:6323171..6325762+ >transcript:BL78614_cuf0 ID=transcript:BL78614_cuf0|Name=transcript:BL78614_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=4032bp|location=Sequence derived from alignment at Sc0000004:6323171..6325762+ (Branchiostoma lanceolatum)
GGTTGTGGAAGGTCTATGGAAGAACTGTATCAAGAACATCCCGGGATTGA
AACAAGCAGCATGGAGGGCCAGGCAATAGTCATGGACAGGCAGCAGGTCT
GGGAAGAACAAGCTTCATGCGAGGTAACTTTTGATGGGAACCTTAGGAAT
TCTGACAATACATCATCATCACATGTAGAACAGGTCGAAAGTCATATGCC
TGAACTCAGTACAGAGAAACCCCGCATCGGTGGAGAATGCGGGGCTGGAA
CACGCAATAGGGAAGCCCTTGGCTTACACATGAGAACCCATACAGGAGAA
AAGCCCTACAAGTGTGATCACTGTGACTATTCGTCAATGCTGAAGTCCCA
TTTAGACATTCATTTGACAAACCATACTGGTGAGAAACCCTACATGTGTT
CATGCGGGTTCGGGACACACTATAGACAAGTCCTGCAAAAACACATGGGG
ATCCATACAGCTGCAGGCAAGTCAAATAAATCAAATCAAATCAAATCAAC
CCATACAGGAAAAAAGCCCTACAAGTGTGATCAGTGCAACTATTCTGCAG
CAAAGAAATCCAGTTTGAATCTCCATCTAGCAATACACACTGGTGATAAA
CCCTACATGTGTGGGGAGTGTGGGCACAGGACACGTCACCTGAATTCTTT
GAAACAACACATGAGAACTCATACAGGAGAAAAGCCCTACAAGTGTGACC
AGTGTGACTATTCTGCTGTGACTAAAAGTGGTTTGGACTACCACCTAATA
GCGAAACATACTGGAAAGAAACCCTACAAGTGTAGGGAGTGTGGATACAG
GTCAGTTCTAAAGACTGCCTTATCCCAGCACATGAAAACTCATACAGTAC
GAGTAAATGCCTACAAGTGTGATCACTGTGACTATTCTGCAACGCGGAAA
GCCAGTCTGGACCTTCATCTATTAATAGCAAAACACACTAGTGAGAAGCC
CTACACGTGTGGGGAGTGTGGGTACAGGGCAGCTGGAAAGAATGACCTTT
CCCTACATTTAAAAAGACACAGAGGAGAAAAGTTCAACACGTGCGACCAG
AGTGACTATTCTGCAGCACAGAGATCCCAATCGGACATTCATCCAGCAAA
TCACACCAGTGAGACACCCTTCACGTGTAGTGATTGTGGGTACAGGGCAC
ACCATAAGACTACCCTCATCAAGCACATGAAAACTCACCTCTCTACTGGA
GAAAAACCCTACGCGTGTGAGGTGTGTGGATACAGGGCAGTTCTAAAGTA
TAACTTATCCAGGCACATGAAAACTCATGTAAAGCCGTACAAGTGTGACC
AATGCGACTATTCTGCTGCACAGAAATCCCATTTAGATAAACATCTAGTA
AAACATACTGGCGAGATATCCTACATGTGTAGTGAGTGTGGATACAGGAC
ACATCGGAAGTCTGTACTATCCAGTCATATGAGAACTCATAAAAATGAAA
AGCCATTCAAGTGTGAGGAGTGTGGGTACAGGGCAACCAAGAAGGATGCC
CTATCAAAACATATGAGAACTCATGCAGGAGATAAACCCTACATGTGTGA
TCAGTGCGACTATTCTGCCACGACGACATCAGGCTTGGTCCGCCATCCTG
CAAAACACACCGGCGAGAAACCTTACATGTGTGACCATTGCGACTATTCT
GCTGCACAGAAATCCGATTTGGTCACCCATTTAGCAAAACATACTGATGA
GAATTCCGATCAAATGGAAAGTCAGATGCCAAAACTTAATACTGAAAAGT
TCTACATGTGTGGGACGTGTGGGTTCAGGACACATAAAATGTCTCACCTA
TCCAGGCACGTGAGAACTCATACAGCAGATAAAGCCTTCAAGTGTGAGCA
TTGTGATTATTCTGCAACACTGAGATGTTATTTGGAGGACCACATTACAG
AACATACTGACGAAAAACCCTACAAATGTGAGAAATGTGGGTACAGGGCA
AACAGAAAAAGTGACCTGCGCGCACATTTCAGAACGCATACAGCAGAAAA
AACTGAACAACTGTGAGGTTGTGGAAGGTCTATGGAAGAACTGTATCAAG
AACATCCCGGGATTGAAACAAGCAGCATGGAGGGCCAGGCAATAGTCATG
GACAGGCAGCAGGTCTGGGAAGAACAAGCTTCATGCGAGGTAACTTTTGA
TGGGAACCTTAGGAATTCTGACAATACATCATCATCACATGTAGAACAGG
TCGAAAGTCATATGCCTGAACTCAGTACAGAGAAACCCCGCATCGGTGGA
GAATGCGGGGCTGGAACACGCAATAGGGAAGCCCTTGGCTTACACATGAG
AACCCATACAGGAGAAAAGCCCTACAAGTGTGATCACTGTGACTATTCGT
CAATGCTGAAGTCCCATTTAGACATTCATTTGACAAACCATACTGGTGAG
AAACCCTACATGTGTTCATGCGGGTTCGGGACACACTATAGACAAGTCCT
GCAAAAACACATGGGGATCCATACAGCTGCAGGCAAGTCAAATAAATCAA
ATCAAATCAAATCAACCCATACAGGAAAAAAGCCCTACAAGTGTGATCAG
TGCAACTATTCTGCAGCAAAGAAATCCAGTTTGAATCTCCATCTAGCAAT
ACACACTGGTGATAAACCCTACATGTGTGGGGAGTGTGGGCACAGGACAC
GTCACCTGAATTCTTTGAAACAACACATGAGAACTCATACAGGAGAAAAG
CCCTACAAGTGTGACCAGTGTGACTATTCTGCTGTGACTAAAAGTGGTTT
GGACTACCACCTAATAGCGAAACATACTGGAAAGAAACCCTACAAGTGTA
GGGAGTGTGGATACAGGTCAGTTCTAAAGACTGCCTTATCCCAGCACATG
AAAACTCATACAGTACGAGTAAATGCCTACAAGTGTGATCACTGTGACTA
TTCTGCAACGCGGAAAGCCAGTCTGGACCTTCATCTATTAATAGCAAAAC
ACACTAGTGAGAAGCCCTACACGTGTGGGGAGTGTGGGTACAGGGCAGCT
GGAAAGAATGACCTTTCCCTACATTTAAAAAGACACAGAGGAGAAAAGTT
CAACACGTGCGACCAGAGTGACTATTCTGCAGCACAGAGATCCCAATCGG
ACATTCATCCAGCAAATCACACCAGTGAGACACCCTTCACGTGTAGTGAT
TGTGGGTACAGGGCACACCATAAGACTACCCTCATCAAGCACATGAAAAC
TCACCTCTCTACTGGAGAAAAACCCTACGCGTGTGAGGTGTGTGGATACA
GGGCAGTTCTAAAGTATAACTTATCCAGGCACATGAAAACTCATGTAAAG
CCGTACAAGTGTGACCAATGCGACTATTCTGCTGCACAGAAATCCCATTT
AGATAAACATCTAGTAAAACATACTGGCGAGATATCCTACATGTGTAGTG
AGTGTGGATACAGGACACATCGGAAGTCTGTACTATCCAGTCATATGAGA
ACTCATAAAAATGAAAAGCCATTCAAGTGTGAGGAGTGTGGGTACAGGGC
AACCAAGAAGGATGCCCTATCAAAACATATGAGAACTCATGCAGGAGATA
AACCCTACATGTGTGATCAGTGCGACTATTCTGCCACGACGACATCAGGC
TTGGTCCGCCATCCTGCAAAACACACCGGCGAGAAACCTTACATGTGTGA
CCATTGCGACTATTCTGCTGCACAGAAATCCGATTTGGTCACCCATTTAG
CAAAACATACTGATGAGAATTCCGATCAAATGGAAAGTCAGATGCCAAAA
CTTAATACTGAAAAGTTCTACATGTGTGGGACGTGTGGGTTCAGGACACA
TAAAATGTCTCACCTATCCAGGCACGTGAGAACTCATACAGCAGATAAAG
CCTTCAAGTGTGAGCATTGTGATTATTCTGCAACACTGAGATGTTATTTG
GAGGACCACATTACAGAACATACTGACGAAAAACCCTACAAATGTGAGAA
ATGTGGGTACAGGGCAAACAGAAAAAGTGACCTGCGCGCACATTTCAGAA
CGCATACAGCAGAAAAAACTGAACAACTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000004 | genome | Sc0000004:6323171..6325762 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78614_cuf0 |
| Biotype | protein_coding |
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