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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78560_cuf1 >transcript:BL78560_cuf1-protein ID=transcript:BL78560_cuf1-protein|Name=transcript:BL78560_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=218bp
MPSTDEVGKIDEPIVFVTSSYQQTLDWMGPIVEDILQAVNQENQSKDAAT
DLVKIVPVLISTRKCASILKQRLTHRSAVICCVNSTERMIILSEEEPSEA
SEVVSAVKERRGKDGIMIVLCGDENMKNELYNTSVFNQSFLRKQPLLHEM
ATPMDRSRFLSIGRDFNLEQRNHLKQWIQQQTRTKKAKQSKTTTAEQKIS
EDTLVSDEGTDQQLLGAQ Run BLAST on NCBI mRNA from alignment at Sc0000055:65499..70672- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78560_cuf1 ID=transcript:BL78560_cuf1|Name=transcript:BL78560_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5174bp|location=Sequence derived from alignment at Sc0000055:65499..70672- (Branchiostoma lanceolatum)
GTTCGTGCTTGTGTTGAACAGACAAACACAGTCAGGCGTCGATACAGAAA
AAGACAGGGACAGTAAGTTGCAATTGTTTTGATACCGTGCCACACGCAAG
CAGTGTGAAAAAATAACCTCACACATTCTGGGGGACAAGAAATGTGTTTG
AAAAGAAAGCATCGACCTCGACCGGTACCATGCCCAGTGAGTTGACAGTT
GTATTCCGGGTTAAAGGTTTGGAAAGGGGTGGGGGGGCGAAGCGTTTCCT
TGATAGATTGAAAAAGTCTGGTTACTACAGTGTTGTTAAAAGTGAAAGTG
AAGAATTCGAAGTGAGACTGTATGTCACCACCCGCACCTACAAGTATTAT
TATCTTAGAGCAGTCCCAGAAAATGATCATGGTTTCGGGCGCGGTTTAAT
AGTATTTGAAGATGACCCCAGCTACCGCAAAAAGTTGATAGAGAAGCTAT
TTCGGCTTGACCAACGGCCAGACCAAGAAATGTTTTTGCAAACATCATTG
CTACATCATCTGGAAGATGACAAAATACCTAACGATCCACCAGTGCTGGA
AGGATCATATTACCGCTATACCTCGCAAAAGTTCCCTCAAATTATACAGG
CTGCTTTAATGGGAGGTGAGTGACAATCGTTTTTGTAGCTTTGAAGTATT
GAATGGATATGAGATTTGTGTATGGTATATTTATGGCTGTCTCGATTTCA
ATAAGATAACCTGTAAGCTAAGTTAGTATCTGTTGTACATTGCACTACAT
TAGAAAAGAATCCAAGCAAAATATGGTAATATTTCTGTCAGCATCCTCAT
TTCCAAGGCAAATTTTGAATAGCACTGGACGCTCGAGCTCAGTATATATT
TCGTTTTTACATTAAGAATGCTTTCCGAAAATAACCATGAAAATGATTCT
GGTTTTTGCTTTTCAGTAATTCAACCATAGGCTAGCAATNGACCACTAGC
TTGAGCTTGAATCATTGCCTGTATAATCCTTCCATCTGTACGTTCAAATC
AACCACTGCACGAAATGGCCTCGTATCCCGGCGTATACGTACAGGGATTC
CTCCGGAAATATTCCATATCCCGGTGCGGATTTAGCGTATCCGTTAATTT
TATCGGATACGCTAAATCCGCACCGGGATATGGAATATTTCCGGAGGAAT
CCCTGTACGTATACGCCGGGATACGAGGCCATTTCGTGCAGTGGTTGATT
TGAACGTACAGATGGAAGGATTATACAGGCAATGATTCAAGCTCAAGCTA
GTGGTCTTATTTGTAGGTCTACTAGGTCTAGCTAATGCTTACTAGATCTA
TACAGTCAACCCGCCACAAAATGAATTGTCAGATACCTCAGACTGATATC
CTTGGTCGCATTTCCCTTTGCAGCTGAGCTAATTACTCATTCCTATCCTA
ATTCCCAGGTACAGATGAAGTCGGCAAGATTGACGAGGTAAGATCATGAT
TGAATTTATATCAAAAATATAGACCCACGCAACAGATTTTTCAACCAAAA
ACATAATCTTCTCCGAGTACATGTACTCGGCGACGATATTCATGGGCTTT
AATGAGTCGAGTGTAGGAGTATCAATAGTATACAATCGGATGGCACCCAG
ACTAGAACAAAATAACACTAAAAAACAATTTCCAACATATCTACTTACCC
TTTAAAGTTTATATCAACTTTCAAAACGTGTTAAACCACATGGACGAGGA
CTCCCTATAAAAAAGCTATCTTCTCTCAGGGTGCTAGTAACTAGATTGAC
TCCAAACATGTTCCCCACATCATAAATGGATCATACACTGTAAGTGATCT
ATACCGGTTTGCACACAATGATAATGGTAAGGGGTAATTACAGCAGTGGA
CAAAAAGTAATTTGCATATTGACTGAAATCTCAAGTTTTGAAAAATCCTG
TATTTTTGTCCACTAGTTTTCAAGGAAAATGTTTTCAGACTAGGAACAAT
TACCAACTTGAAGATAGTTGCAGCAAACACAGATACAGTGCCATCCACAA
GTAGTTTTCACACATGAGCTCAGGCGTTGTTCTGGTCTTCAGCTTCAAAT
CCTTGTTTGAACTGACTTTCAGCGAAGATCAGCCCATGTCAGGATTTGTA
TCAAAAACTCTTATCTGTATTTGTGAAGTACAAGCGAATCTTACTAACAG
CTGAATTAGCTTTCAGTAGATAGCTGTGTGTCTATAAAGCTGCCAATACT
TGTAGTGCCTACTTGGTGAACATAGAAACGAGAATTAGCCACGCGTGTTC
TTTAGCACTGGCCAGCCAACCCCCCCCCCCACTTTACCAGGTTTGGCTTG
GTGTGCCTACGCGGTTTTAATCTACATCCTTGTTGTTTTCTTTTGGTGTG
CAGCCAAACCTCCATGTCTTATCTGTTATCTCCACTGAGTAAAGTGTTTT
TAAGAGTAGCTATTTTTTTGGTATATTTTCTAAGCTAAGCCTCCCCCCCC
CATGTGAACAGCATGGTTGTCAGGTCAGAATAAGCAATCACAGTTTACGG
TAGCTCCGTTTGTTGGGTGCTTTTATAGTGCAACCAACTTAATTTGGACA
TATTTATAACATCCTCCTTAATTCTTCTCTTTGAAGCCAATTGTGTTCGT
GACGTCAAGCTACCAACAAACCCTAGACTGGATGGGGCCAATCGTAGAGG
ATATTTTACAAGCCGTCAATCAAGAGAATCAGTCCAAGGATGCAGCAACA
GATCTAGTCAAGATCGTCCCTGTCCTCATTTCTACACGGAAATGTGCTAG
CATTTTGAAACAACGGCTAACACATAGGTCAGCGGTGATCTGCTGTGTAA
ATAGCACTGAACGGATGATCATACTGTCCGAAGAAGAACCAAGCGAGGCA
TCGGAAGTCGTATCCGCAGTGAAAGAAAGACGTGGCAAAGACGGTAAGAA
TACCTAGATCTGATGTTTAGAACCATATCCGGCAAGTCTTTACCCTTGTG
AAATTTTGTTTTATGAGCATGGTGTGACATGGATTTTGGATGTTGCAATT
CAAACCTCAGGAGCGAGAAGAGCGATAGTAAAAAAAAGAATTGTCAACAG
CCACTGATTATTTGTCTTCTCTGTTGCCAGGTATCATGATAGTTCTCTGT
GGGGACGAGAACATGAAGAATGAACTATACAACACTTCCGTATTCAATCA
GAGTTTCTTGCGTAAGCAGCCTCTGTTACATGAAATGGCTACTCCCATGG
ACCGATCGCGCTTTCTCAGCATCGGAAGAGACTTTAACTTGGAACAAAGG
AACCACCTTAAACAGTGGATTCAACAGCAAACACGTACCAAAAAGGCAAA
ACAAAGCAAGACAACAACGGCTGAACAGAAAATCTCAGAGGACACTTTAG
TCAGTGACGAGGGCACAGACCAGCAGTTATTAGGGGCTCAATAATAAGCT
TAACGTGTCAATTGTCAATAGACAAGAGCCTTTCCAGACAGGCGATGTTC
TTCATCTAATGATACCAATGTATGAAGGAATATGGCAAAGTTTGACCTAA
AGGCTGTTACGGACCCATGATCAATTTTGATAAAACAACATAAAAGCGTC
TATTGTACGAGCCTTTGGGCTAACGAAGGTGGCATGGCGTAATTTATTTC
ATACTGAAAAACATTCATAGTCACAAAGGTCCGGTTAACTGTAAATATTT
GATTAGCCTCCCTCAGCAAGACTTTGACATTCTTACTCGCTAATAAGTGC
TGACTTTTAAAAGTCAGGAAAATCTGGAGGCTTTGTCGATGAGCTCTTTG
AATCCGGGTCGGTGTGTCAAATGAGAGACGCTTGTTATATCTTTGATGTT
TAAATTGGCCCTCCCAGAACTGGGAACGCAAACACTCCACTAAGTGATGT
TATCAATGATTAATAACCATGTCAAAACTGTCACAGGCGGTATTGTTTGC
AAGTGATTTATGGTCATATTGACAACTTTTGTTCTAGCTAGTATGTACAT
TTCTCACAGTCTGTGCGTCATGAGCAAAGATTTAGACACATGAGAAACAA
TCGTTTTTGCCACGTTATATATTAGAGCGATAGTAATGTAAGGCTATGGC
ACCAAGCCAACTACTGGGGACTAGATCTTGAACGACCTTGTATTAATTCC
CCAAATGAAGCAAAAGGGCTGTGTCAGTTAAAATGTAGTTATATCTTATT
GGAAAAATGCATCTGACAATGGGATACGCTCTTACTCATAGCACCAGTGA
CGCCATTGCTTTGCGATGGACTTCCATCAATACATACTTTCCCGTGTATT
GGGCCATTTTGATTTGATTTTATGAATGGCATCCTCTGGGGACCCCAAAA
CAGATGCAAGCGTTTTGGAAAAAAAAAGTTGCCTTCATTTTATGATACCT
TGTAGGTTCATTATGGCATACATTAAATTCGGTGGCTCAATTTTCTAGTT
CAGTTTACAGCATGTGGTGCTTTTGTGATGCTTTGTATTTGAAGTGAATA
CTTTAAATGATACCAAGAATGTATCAGTTTTAATTTGACAATAAAACAGC
ATCATTAAACAAGATAATTTCTGTGGTACATTCTAAAACTGCATGACAAT
AAATACATCTAGTATTGAGTTGCGTTGCCAGTCTGAGTGTAACATGGTAT
CGAGTTAAAGTACAGGCACAATCAGAAAATGAAGAGATGTTTTTTGCTAA
AACTGTTTTTGACGAAATGTGGCCTGGACTAAAACTTCCCCTGTAGGCAA
GTCATGTAATTGAAAACAAAACATCAGTCAGACTGTTTACCAAAGTCTAG
ACATGTAATCCTATTCCCTTACCCTTCGTGTTACAGGTCACATAATAACT
GAAGGCTAGCTATGACTCAGTCCCGGCTGAGTTATCTCGTATTGTGACTA
AAAGGTCGTCGTTTATCTTTCGATATGTGTATTTTGTAATGGTACCGTGC
CAACATGAACCTACCCATGAGTTAACCCAAACATGGTCTGTTTGCTTACA
TCTCTTTTTCTTTTCAATGTCTTCTTGATCCACGTCAAAGGCACATTGAA
GCACAAATACATTGTTTGGGTTGTGCCATACCCCAGGCCACGGCCTAGAC
ATTGCCTTTGTGCCTCCAGGCAAGAATGTTCTTGCATTACATTCTTTCTT
TTATTATTTCTCAGTGCTTTCAAGCAAATCAGTCCTTAAAACCTATGATA
AGAATTGACGTAATTAGTTAAAAG Coding sequence (CDS) from alignment at Sc0000055:65499..70672- >transcript:BL78560_cuf1 ID=transcript:BL78560_cuf1|Name=transcript:BL78560_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2628bp|location=Sequence derived from alignment at Sc0000055:65499..70672- (Branchiostoma lanceolatum)
ATGCCCAGTACAGATGAAGTCGGCAAGATTGACGAGCCAATTGTGTTCGT
GACGTCAAGCTACCAACAAACCCTAGACTGGATGGGGCCAATCGTAGAGG
ATATTTTACAAGCCGTCAATCAAGAGAATCAGTCCAAGGATGCAGCAACA
GATCTAGTCAAGATCGTCCCTGTCCTCATTTCTACACGGAAATGTGCTAG
CATTTTGAAACAACGGCTAACACATAGGTCAGCGGTGATCTGCTGTGTAA
ATAGCACTGAACGGATGATCATACTGTCCGAAGAAGAACCAAGCGAGGCA
TCGGAAGTCGTATCCGCAGTGAAAGAAAGACGTGGCAAAGACGGTATCAT
GATAGTTCTCTGTGGGGACGAGAACATGAAGAATGAACTATACAACACTT
CCGTATTCAATCAGAGTTTCTTGCGTAAGCAGCCTCTGTTACATGAAATG
GCTACTCCCATGGACCGATCGCGCTTTCTCAGCATCGGAAGAGACTTTAA
CTTGGAACAAAGGAACCACCTTAAACAGTGGATTCAACAGCAAACACGTA
CCAAAAAGGCAAAACAAAGCAAGACAACAACGGCTGAACAGAAAATCTCA
GAGGACACTTTAGTCAGTGACGAGGGCACAGACCAGCAGTTATTAGGGGC
TCAATAAATGCCCAGTACAGATGAAGTCGGCAAGATTGACGAGCCAATTG
TGTTCGTGACGTCAAGCTACCAACAAACCCTAGACTGGATGGGGCCAATC
GTAGAGGATATTTTACAAGCCGTCAATCAAGAGAATCAGTCCAAGGATGC
AGCAACAGATCTAGTCAAGATCGTCCCTGTCCTCATTTCTACACGGAAAT
GTGCTAGCATTTTGAAACAACGGCTAACACATAGGTCAGCGGTGATCTGC
TGTGTAAATAGCACTGAACGGATGATCATACTGTCCGAAGAAGAACCAAG
CGAGGCATCGGAAGTCGTATCCGCAGTGAAAGAAAGACGTGGCAAAGACG
GTATCATGATAGTTCTCTGTGGGGACGAGAACATGAAGAATGAACTATAC
AACACTTCCGTATTCAATCAGAGTTTCTTGCGTAAGCAGCCTCTGTTACA
TGAAATGGCTACTCCCATGGACCGATCGCGCTTTCTCAGCATCGGAAGAG
ACTTTAACTTGGAACAAAGGAACCACCTTAAACAGTGGATTCAACAGCAA
ACACGTACCAAAAAGGCAAAACAAAGCAAGACAACAACGGCTGAACAGAA
AATCTCAGAGGACACTTTAGTCAGTGACGAGGGCACAGACCAGCAGTTAT
TAGGGGCTCAATAAATGCCCAGTACAGATGAAGTCGGCAAGATTGACGAG
CCAATTGTGTTCGTGACGTCAAGCTACCAACAAACCCTAGACTGGATGGG
GCCAATCGTAGAGGATATTTTACAAGCCGTCAATCAAGAGAATCAGTCCA
AGGATGCAGCAACAGATCTAGTCAAGATCGTCCCTGTCCTCATTTCTACA
CGGAAATGTGCTAGCATTTTGAAACAACGGCTAACACATAGGTCAGCGGT
GATCTGCTGTGTAAATAGCACTGAACGGATGATCATACTGTCCGAAGAAG
AACCAAGCGAGGCATCGGAAGTCGTATCCGCAGTGAAAGAAAGACGTGGC
AAAGACGGTATCATGATAGTTCTCTGTGGGGACGAGAACATGAAGAATGA
ACTATACAACACTTCCGTATTCAATCAGAGTTTCTTGCGTAAGCAGCCTC
TGTTACATGAAATGGCTACTCCCATGGACCGATCGCGCTTTCTCAGCATC
GGAAGAGACTTTAACTTGGAACAAAGGAACCACCTTAAACAGTGGATTCA
ACAGCAAACACGTACCAAAAAGGCAAAACAAAGCAAGACAACAACGGCTG
AACAGAAAATCTCAGAGGACACTTTAGTCAGTGACGAGGGCACAGACCAG
CAGTTATTAGGGGCTCAATAAATGCCCAGTACAGATGAAGTCGGCAAGAT
TGACGAGCCAATTGTGTTCGTGACGTCAAGCTACCAACAAACCCTAGACT
GGATGGGGCCAATCGTAGAGGATATTTTACAAGCCGTCAATCAAGAGAAT
CAGTCCAAGGATGCAGCAACAGATCTAGTCAAGATCGTCCCTGTCCTCAT
TTCTACACGGAAATGTGCTAGCATTTTGAAACAACGGCTAACACATAGGT
CAGCGGTGATCTGCTGTGTAAATAGCACTGAACGGATGATCATACTGTCC
GAAGAAGAACCAAGCGAGGCATCGGAAGTCGTATCCGCAGTGAAAGAAAG
ACGTGGCAAAGACGGTATCATGATAGTTCTCTGTGGGGACGAGAACATGA
AGAATGAACTATACAACACTTCCGTATTCAATCAGAGTTTCTTGCGTAAG
CAGCCTCTGTTACATGAAATGGCTACTCCCATGGACCGATCGCGCTTTCT
CAGCATCGGAAGAGACTTTAACTTGGAACAAAGGAACCACCTTAAACAGT
GGATTCAACAGCAAACACGTACCAAAAAGGCAAAACAAAGCAAGACAACA
ACGGCTGAACAGAAAATCTCAGAGGACACTTTAGTCAGTGACGAGGGCAC
AGACCAGCAGTTATTAGGGGCTCAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000055 | genome | Sc0000055:65499..70672 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78560_cuf1 |
| Biotype | protein_coding |
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