transcript:BL78542_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL78542_cuf0
Unique Nametranscript:BL78542_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL78542_cuf0

>transcript:BL78542_cuf0-protein ID=transcript:BL78542_cuf0-protein|Name=transcript:BL78542_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=106bp
DIVKATLGDTATLPAKYSTSYRVISIIWHKVDIDSTSQQRRSVFSYVPDL
NIRRAYGVYKGRAQLVGQASLRIDRTTADDEGMYALSIMTDERGTDEKFI
RLDLHG
Run BLAST on NCBI

mRNA from alignment at Sc0000020:2456364..2456976+

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL78542_cuf0 ID=transcript:BL78542_cuf0|Name=transcript:BL78542_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=613bp|location=Sequence derived from alignment at Sc0000020:2456364..2456976+ (Branchiostoma lanceolatum)
GACATTGTGAAAGCGACATTGGGTGATACCGCAACTTTGCCAGCAAAATA
CTCTACCAGTTACAGAGTGATTTCAATCATATGGCACAAAGTTGACATAG
ACAGCACATCCCAGCAGAGACGAAGTGTCTTCTCCTATGTTCCTGACTTA
AACATAAGACGTGCTTATGGCGTCTATAAGGGGAGAGCCCAGTTGGTGGG
ACAAGCATCCCTGCGGATTGATCGTACGACGGCGGATGACGAGGGAATGT
ACGCCCTGTCAATCATGACCGACGAACGAGGCACCGACGAGAAATTCATC
CGCCTGGATCTACATGGTTAGTTTCTAATTATTCGATTGTACCTGACTTA
AGGAAGATGACAAATCATTATAAACACTCGAATGGACTTCCCTAATGGGT
TTTCTTTACGATCAATAGCAATTTTCCTCCAGTGCATTTACTTTATTTTG
TAATGAGTTTATTGGTTTTATTGCATAGAACTTGGCAGACCATGGGCAAG
GAAGGAAACAATCGATGGTCATTTGCACTTGATATCATCAGTGGCCTCAA
ACAATGTGATTTCTAATTTCAAATTAAAGGAAGCGAGAGAACTCGCAAAG
AAGGAGGGCAACC

Coding sequence (CDS) from alignment at Sc0000020:2456364..2456976+

>transcript:BL78542_cuf0 ID=transcript:BL78542_cuf0|Name=transcript:BL78542_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=321bp|location=Sequence derived from alignment at Sc0000020:2456364..2456976+ (Branchiostoma lanceolatum)
GACATTGTGAAAGCGACATTGGGTGATACCGCAACTTTGCCAGCAAAATA
CTCTACCAGTTACAGAGTGATTTCAATCATATGGCACAAAGTTGACATAG
ACAGCACATCCCAGCAGAGACGAAGTGTCTTCTCCTATGTTCCTGACTTA
AACATAAGACGTGCTTATGGCGTCTATAAGGGGAGAGCCCAGTTGGTGGG
ACAAGCATCCCTGCGGATTGATCGTACGACGGCGGATGACGAGGGAATGT
ACGCCCTGTCAATCATGACCGACGAACGAGGCACCGACGAGAAATTCATC
CGCCTGGATCTACATGGTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL78542gene:BL78542Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL78542_cuf0-E1BL78542_cuf0-E1-1564476830-144735Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL78542_cuf0transcript:BL78542_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000020genomeSc0000020:2456364..2456976 +
Properties
Property NameValue
Transcript idBL78542_cuf0
Biotypeprotein_coding