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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78518_cuf1 >transcript:BL78518_cuf1-protein ID=transcript:BL78518_cuf1-protein|Name=transcript:BL78518_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=269bp
MATFGLVKLLLLVLLLELASGQTTVVTTPNGSKGDCQVGDGALYRGTVSV
TKTGKTCQRWDSQTPHGHSRTPANHPSSGLEQNYCRNPDGEPGVWCYTTD
NSSRWEYCDIPFCGVMTTAAGVMTTAAMTTDAARMATDGMTTDAGGVTTA
AMTTAAGEMTTAAKTTAAGGMTTAAMTTAAGGMTTAADGMTTAADGMTTA
AGGMTTRLESTTNQGGVSSPSQVDQQTIIIIAVVVAAAVLLLVLAATSII
VYRRSHNRSANLSFSNVER Run BLAST on NCBI mRNA from alignment at Sc0000002:5569179..5573000+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78518_cuf1 ID=transcript:BL78518_cuf1|Name=transcript:BL78518_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3822bp|location=Sequence derived from alignment at Sc0000002:5569179..5573000+ (Branchiostoma lanceolatum)
GTACGTTGCATTTGTACAATGCAAATGTGATACTGTGTGTTATGCTATCG
TTTTTCTACCGTCAAGCACTCTTTAATAGCAACGCAGGATCCTCCCACGG
AAAACACCTTAACACATACTAGTAACTAGTCAGTACCAATAGAAAAAAGA
CAACATTCAATCTAGTACCGCATCACATATCATTTTTACGTGTCTAGCAT
TTCCGACCGGTGTTTTTAACGTGTCGCAAAGGAAAAACCTTAGGGCCCTG
TCACACTTGCGCGTGAGTTGCGCATTAACATTTTGGGGTTTAAGTAAATT
TTGCGGGGAAGAAGTTGTTTTCTGCGTTGACCCACCGTTGTGCAGCCTAG
TTATCGAACCAAAGAAATGACTTCTTTGGCTGCAAACTTAACCTAAACCA
AAAACATGTTAATACGCAACTTATGCGGGCTTGCATATACGCAGAAGTGT
GACAGGGGCTTTACCCAGAACATCCTGAGGGTATCAAACAATGGCGGCAA
AAACGTAGCTTAGCATATGCATATTACTGTCATGTGCTGTTAAGAGGAAC
ATACGTAGTCAATGTGTCCCCCTGCTGACGCTCGACAGCAATTTTCCCCT
TAAACGAAGAATACAGCGGAAACGACAAGTACATTGTATAAACACCGTCT
GTGTACCTTCGACGTGAGAAGCGACCATGATAAAGAACTTTGAAGGAGCG
GCTCAGTGAGTGGGCCTATTGAGTGACGAAAACTGCCGAACACTTACAAA
GAAGCTTGCGTCAGCAAAACATATCAGATTTGACATACAATCCTCTGTTT
TGTGGTCTATGGTATTGACACAGGATGACTGTTTCGTGCTGCACCTCTTC
CAATAATAAATGTGCCATTATTTTAGCATTTGGTGCCCTATGACTCATGC
TTTGAAAGGTGCAGGCAGTGGGCGTATCAATTCATTAAATACGGACGTTA
CGTTTAACTTCAGGTGAAAACTGCTTAACCGTCACAGAGGAAGGCTTAGC
GTGGACCGCTCCAATTACTCTTATATCCTTTGCTGTTTAAGATGGCAACG
TTCGGTCTAGTGAAGTTGTTGCTGTTGGTTCTCCTGTTGGAACTAGCCAG
CGGACAAACAACGGTCGTTACAACGCCAAACGGCAGTAAAGGTACGTAAT
GTTCTACCCTTCTGACGCCTTTAGGCCAAAGGTCTGTAGGTTGTCAGCCT
TGTAAGTAACGAACGCTCTCCACACTGTTTTCTAATGTCAGTAGTTGTTT
CAATGGAATAAATTGGTTATACTCCTCATGCGAATCAAGACAACGTGTAT
TAATATCCCCTTTTATCTTATTCCATCAACCAGGAGATTGCCAGGTGGGA
GATGGAGCATTATACCGAGGAACAGTCTCTGTGACCAAAACAGGCAAGAC
GTGTCAACGCTGGGACAGTCAGACACCTCATGGACACAGCAGGACACCTG
CTAATCACCCATCATCCGGACTAGAGCAGAACTACTGCCGGAATCCGGAC
GGCGAACCCGGAGTTTGGTGCTACACCACAGACAATAGCAGTAGATGGGA
GTACTGTGACATACCATTCTGTGGTAAGGTCTGATTATGTAACCTACGTT
CTGTGTTATGACCTCCTTTTATTTATATCTACTATCACATCTGCTCCTCG
AATGTCCAGACACATCAACCAATAACCGTTGATGACTAGTCAAGCCCCAT
TCCACGTGACGGCGCTCTCGCTTGGTTTGTAAAACAGATTGGTTTGTAAC
ATAAGATGATAAAGAATACTGTATTAACCGGATGTGTCGATTTATACATT
CATGAATTGAGACTAAATTAACACTTGGCTTTCTGAAAGTTCCCCACCAG
AAAATAACTGTTCAAAGTCCAAATTCATTACAAATGTAGGAAAAAAACTG
TTTGTCTGCTAAAGCACGGTCAGGCGTCGGCAGGGCGTATAGGCTTATCG
ATGGTCGTCCGAAGCTCGGACGGCGTTTTCCCGAGCTTCAGCCGATTTCC
GTTCGGCGAAAATCATAGCTTTTACTTTAAGGAAACTGGTCTGTTGATGT
TGTGGCTCCTGTGGTAGCATTTGAGTTGGTCTATCACAAAATCCATGTTG
ATGTTATTATTTTCACTGTGCCTGTTCACTCCAAATGAGTCACGACAGGC
TTCCCCGGCATTCATTTAGAACACATGACACTAACAGATATTTTCTGTTT
ACACTAAATAAAAAGATACCGCAACAACAACGTAGTTGATGTCGGATATA
TTGAGGTGTTCTTCATGGGTCAGGTCTGGCAGAGTAAGAACACAGGATGT
TCGCTACCAGGATAATCTAAACAAGCTAGTAAAGATAAATTCTAACTACT
GCAGGTGGTGTGACGACTGCAGGTGTAATGACGACAGCTGCGGGTGTAAT
GACGACAGCTGCAATGACGACAGATGCAGCTAGAATGGCGACAGATGGAA
TGACGACAGATGCGGGTGGCGTGACGACAGCTGCAATGACGACAGCTGCA
GGTGAAATGACGACAGCTGCAAAGACGACAGCTGCGGGTGGAATGACGAC
AGCTGCAATGACGACAGCTGCGGGTGGAATGACGACAGCTGCGGATGGAA
TGACGACAGCTGCGGATGGAATGACGACAGCTGCAGGTGGAATGACAACT
CGGCTAGGTACGTGTGAGAGCACGAGGAAACTGGCTACGATTGTAAACAT
AATTAGTGAATTGTGGCTATTTTAGATAGGTGTACAAAATACATGTACAG
AACATGTATATCCAACACACACTACAACTCGTCTATACATTTGTAGTCTT
CACGAAAAAAAACCTACATGCCAAGAGCCATAGCAAGAAAAATAGTTACA
TATTATATTGATCTTTCGCACAATTACTGTTATGATTTATATGTCATTGC
CTTCGGTGTGCGCATATTAGAGGTCAATACAGATAACTACTTACTTACTC
ATTCATGCATGTTTTACAACCATTTCCACAGAGTCTACCACAAATCAAGG
GGGTGTGAGCAGCCCTTCCCAGGTCGATCAGCAGACGATCATCATCATCG
CGGTTGTGGTGGCAGCCGCCGTGCTTTTACTGGTCCTCGCGGCGACCAGT
ATAATTGTGTATAGGCGATCTCATAACAGGTAAGCAAGAAACTGTATATA
TTTCATGATTAGAATAAGTTTGACCAGAACTTGATCCACCCATTTTCCAA
ATTCTCAATGTCATTTTGAATGTACATGTAAAGCTAATATTCTCTACTTG
TTGGTGCATTATTAACCACTCATATTCGGTTTCCTGTTTGTGCATGCGCA
ATGTAACCCATACATGCAAATAAGAATACAAAATCACCTTTTTTTCAGGA
GCGCCAATTTGTCATTTTCAAACGTTGAGCGGTGAACATAAGGAAAGCAT
CTGGATTGCAACTTCGGCTTGACAATTGAAAACTACAAACAAGTGAGGCA
CAATTCCTTTTAACACATAAACATTGTTAAGGTTAGCTGGGAAATATTAT
CAGTCTAAACCAGAAGTACAGAATCGTTTGATATTAAGTTATTGAGATAC
TGTTTCAGCTAGTAGGATTCAGAACTGGACTATCTACATGTATATGCCTG
CTTCAAAAACAAAAGTTGTTATTTTGTTTATCTATTTAATTATTTATTTA
TTTATCTATTTATCTATGTATTAGAGTAGTTTTAGAACCATTGTTTTAGA
TAAGCATTAGTAGTCAGTACCAATATATGTACATTACCATGTATTTTTGT
TGTTGTTGTATCAACTGTATGCCTGTACTTAGCCCGACAGGGCATGAATG
TACAATAAAGGTTATTATAAAC Coding sequence (CDS) from alignment at Sc0000002:5569179..5573000+ >transcript:BL78518_cuf1 ID=transcript:BL78518_cuf1|Name=transcript:BL78518_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4050bp|location=Sequence derived from alignment at Sc0000002:5569179..5573000+ (Branchiostoma lanceolatum)
ATGGCAACGTTCGGTCTAGTGAAGTTGTTGCTGTTGGTTCTCCTGTTGGA
ACTAGCCAGCGGACAAACAACGGTCGTTACAACGCCAAACGGCAGTAAAG
GAGATTGCCAGGTGGGAGATGGAGCATTATACCGAGGAACAGTCTCTGTG
ACCAAAACAGGCAAGACGTGTCAACGCTGGGACAGTCAGACACCTCATGG
ACACAGCAGGACACCTGCTAATCACCCATCATCCGGACTAGAGCAGAACT
ACTGCCGGAATCCGGACGGCGAACCCGGAGTTTGGTGCTACACCACAGAC
AATAGCAGTAGATGGGAGTACTGTGACATACCATTCTGTGGTGTAATGAC
GACAGCTGCGGGTGTAATGACGACAGCTGCAATGACGACAGATGCAGCTA
GAATGGCGACAGATGGAATGACGACAGATGCGGGTGGCGTGACGACAGCT
GCAATGACGACAGCTGCAGGTGAAATGACGACAGCTGCAAAGACGACAGC
TGCGGGTGGAATGACGACAGCTGCAATGACGACAGCTGCGGGTGGAATGA
CGACAGCTGCGGATGGAATGACGACAGCTGCGGATGGAATGACGACAGCT
GCAGGTGGAATGACAACTCGGCTAGAGTCTACCACAAATCAAGGGGGTGT
GAGCAGCCCTTCCCAGGTCGATCAGCAGACGATCATCATCATCGCGGTTG
TGGTGGCAGCCGCCGTGCTTTTACTGGTCCTCGCGGCGACCAGTATAATT
GTGTATAGGCGATCTCATAACAGGAGCGCCAATTTGTCATTTTCAAACGT
TGAGCGGTGAATGGCAACGTTCGGTCTAGTGAAGTTGTTGCTGTTGGTTC
TCCTGTTGGAACTAGCCAGCGGACAAACAACGGTCGTTACAACGCCAAAC
GGCAGTAAAGGAGATTGCCAGGTGGGAGATGGAGCATTATACCGAGGAAC
AGTCTCTGTGACCAAAACAGGCAAGACGTGTCAACGCTGGGACAGTCAGA
CACCTCATGGACACAGCAGGACACCTGCTAATCACCCATCATCCGGACTA
GAGCAGAACTACTGCCGGAATCCGGACGGCGAACCCGGAGTTTGGTGCTA
CACCACAGACAATAGCAGTAGATGGGAGTACTGTGACATACCATTCTGTG
GTGTAATGACGACAGCTGCGGGTGTAATGACGACAGCTGCAATGACGACA
GATGCAGCTAGAATGGCGACAGATGGAATGACGACAGATGCGGGTGGCGT
GACGACAGCTGCAATGACGACAGCTGCAGGTGAAATGACGACAGCTGCAA
AGACGACAGCTGCGGGTGGAATGACGACAGCTGCAATGACGACAGCTGCG
GGTGGAATGACGACAGCTGCGGATGGAATGACGACAGCTGCGGATGGAAT
GACGACAGCTGCAGGTGGAATGACAACTCGGCTAGAGTCTACCACAAATC
AAGGGGGTGTGAGCAGCCCTTCCCAGGTCGATCAGCAGACGATCATCATC
ATCGCGGTTGTGGTGGCAGCCGCCGTGCTTTTACTGGTCCTCGCGGCGAC
CAGTATAATTGTGTATAGGCGATCTCATAACAGGAGCGCCAATTTGTCAT
TTTCAAACGTTGAGCGGTGAATGGCAACGTTCGGTCTAGTGAAGTTGTTG
CTGTTGGTTCTCCTGTTGGAACTAGCCAGCGGACAAACAACGGTCGTTAC
AACGCCAAACGGCAGTAAAGGAGATTGCCAGGTGGGAGATGGAGCATTAT
ACCGAGGAACAGTCTCTGTGACCAAAACAGGCAAGACGTGTCAACGCTGG
GACAGTCAGACACCTCATGGACACAGCAGGACACCTGCTAATCACCCATC
ATCCGGACTAGAGCAGAACTACTGCCGGAATCCGGACGGCGAACCCGGAG
TTTGGTGCTACACCACAGACAATAGCAGTAGATGGGAGTACTGTGACATA
CCATTCTGTGGTGTAATGACGACAGCTGCGGGTGTAATGACGACAGCTGC
AATGACGACAGATGCAGCTAGAATGGCGACAGATGGAATGACGACAGATG
CGGGTGGCGTGACGACAGCTGCAATGACGACAGCTGCAGGTGAAATGACG
ACAGCTGCAAAGACGACAGCTGCGGGTGGAATGACGACAGCTGCAATGAC
GACAGCTGCGGGTGGAATGACGACAGCTGCGGATGGAATGACGACAGCTG
CGGATGGAATGACGACAGCTGCAGGTGGAATGACAACTCGGCTAGAGTCT
ACCACAAATCAAGGGGGTGTGAGCAGCCCTTCCCAGGTCGATCAGCAGAC
GATCATCATCATCGCGGTTGTGGTGGCAGCCGCCGTGCTTTTACTGGTCC
TCGCGGCGACCAGTATAATTGTGTATAGGCGATCTCATAACAGGAGCGCC
AATTTGTCATTTTCAAACGTTGAGCGGTGAATGGCAACGTTCGGTCTAGT
GAAGTTGTTGCTGTTGGTTCTCCTGTTGGAACTAGCCAGCGGACAAACAA
CGGTCGTTACAACGCCAAACGGCAGTAAAGGAGATTGCCAGGTGGGAGAT
GGAGCATTATACCGAGGAACAGTCTCTGTGACCAAAACAGGCAAGACGTG
TCAACGCTGGGACAGTCAGACACCTCATGGACACAGCAGGACACCTGCTA
ATCACCCATCATCCGGACTAGAGCAGAACTACTGCCGGAATCCGGACGGC
GAACCCGGAGTTTGGTGCTACACCACAGACAATAGCAGTAGATGGGAGTA
CTGTGACATACCATTCTGTGGTGTAATGACGACAGCTGCGGGTGTAATGA
CGACAGCTGCAATGACGACAGATGCAGCTAGAATGGCGACAGATGGAATG
ACGACAGATGCGGGTGGCGTGACGACAGCTGCAATGACGACAGCTGCAGG
TGAAATGACGACAGCTGCAAAGACGACAGCTGCGGGTGGAATGACGACAG
CTGCAATGACGACAGCTGCGGGTGGAATGACGACAGCTGCGGATGGAATG
ACGACAGCTGCGGATGGAATGACGACAGCTGCAGGTGGAATGACAACTCG
GCTAGAGTCTACCACAAATCAAGGGGGTGTGAGCAGCCCTTCCCAGGTCG
ATCAGCAGACGATCATCATCATCGCGGTTGTGGTGGCAGCCGCCGTGCTT
TTACTGGTCCTCGCGGCGACCAGTATAATTGTGTATAGGCGATCTCATAA
CAGGAGCGCCAATTTGTCATTTTCAAACGTTGAGCGGTGAATGGCAACGT
TCGGTCTAGTGAAGTTGTTGCTGTTGGTTCTCCTGTTGGAACTAGCCAGC
GGACAAACAACGGTCGTTACAACGCCAAACGGCAGTAAAGGAGATTGCCA
GGTGGGAGATGGAGCATTATACCGAGGAACAGTCTCTGTGACCAAAACAG
GCAAGACGTGTCAACGCTGGGACAGTCAGACACCTCATGGACACAGCAGG
ACACCTGCTAATCACCCATCATCCGGACTAGAGCAGAACTACTGCCGGAA
TCCGGACGGCGAACCCGGAGTTTGGTGCTACACCACAGACAATAGCAGTA
GATGGGAGTACTGTGACATACCATTCTGTGGTGTAATGACGACAGCTGCG
GGTGTAATGACGACAGCTGCAATGACGACAGATGCAGCTAGAATGGCGAC
AGATGGAATGACGACAGATGCGGGTGGCGTGACGACAGCTGCAATGACGA
CAGCTGCAGGTGAAATGACGACAGCTGCAAAGACGACAGCTGCGGGTGGA
ATGACGACAGCTGCAATGACGACAGCTGCGGGTGGAATGACGACAGCTGC
GGATGGAATGACGACAGCTGCGGATGGAATGACGACAGCTGCAGGTGGAA
TGACAACTCGGCTAGAGTCTACCACAAATCAAGGGGGTGTGAGCAGCCCT
TCCCAGGTCGATCAGCAGACGATCATCATCATCGCGGTTGTGGTGGCAGC
CGCCGTGCTTTTACTGGTCCTCGCGGCGACCAGTATAATTGTGTATAGGC
GATCTCATAACAGGAGCGCCAATTTGTCATTTTCAAACGTTGAGCGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000002 | genome | Sc0000002:5569179..5573000 + |
Properties
| Property Name | Value |
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| Transcript id | BL78518_cuf1 |
| Biotype | protein_coding |
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