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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77531_cuf1 >transcript:BL77531_cuf1-protein ID=transcript:BL77531_cuf1-protein|Name=transcript:BL77531_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=105bp
MGDNLREHVMINQFVMTAGCTFDQAKTLLQKAHWQFETALSIFFQEAVPN
AHGHHGGHHPMCTPANTPATPPAFPDTLTAFSKLQASDTGAIPGQQNTVA
ALLAP Run BLAST on NCBI mRNA from alignment at Sc0000103:690830..695677+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77531_cuf1 ID=transcript:BL77531_cuf1|Name=transcript:BL77531_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4848bp|location=Sequence derived from alignment at Sc0000103:690830..695677+ (Branchiostoma lanceolatum)
CTGAATTCGCCGCGATGTCCAGTTCTTCTACACCAGCATTTTGCCTACTT
GTGAACGCGCCCATTTTCCTGCTATCTATAGCACTCTAACATCTATAGAG
ATGCACGATTTTTGTAAAAACGTTCACTGTAATTTTTCCATTTTCTGCTT
CCCGGAGAAAAATAAGATGGCGGACGTCGATATGCTAATTAGCAATCCCA
CAATTCATCCCGCCTTTCTTTGTTTATGTTTGTCTGGGGCACATGACCAA
TGGTAATTTTGTTTTGACCGATTTGAAAACCGTCTTTTGGATTATTTCTT
CTAAGGAGGACCCACCCATTGCCAATGCATCCAATGTTTATCACAAAAAC
TACCATTTTATAAGCTAGAAATGAGCTATCTTCATTCTTTGACCTAAAAC
CATCTATGACCCATATATGACCCAATTTAACTGTTTTCTCGTCTTGAACT
GGGTGACATTTGCAGTTAAGTGTCACATATGTCAGAAAAACAGTCATCAA
TAATACCTACATCTGTTTTTAGTTTCATTGTGGAGAATTTTGCTTTAACG
ATCGTAATTTCTCCTTAGATGCTCGGGGAGGGAAAGCTATTCATAGAAGA
GCCGTGGCGGGAACACACCCTGTTTTAAACTAGATTAAAGCTGACCAATC
AGATGGCAGGAAATGCGATTCCAGGTGACGTCATTACCATCAGGCGATTG
CGTGCTGAAATAGGGACAACATTCGCCGTGGAGCTGTTTCAGAAGGGACA
CTTTAGACCACAAAATCTTAGATTTTAGCGATGGGAGACAACTTGAGAGA
GCACGTTATGATCAACCAGTTCGTCATGACGGCTGGCTGCACGTTTGACC
AGGCCAAGACGCTACTTCAGAAGGCCCACTGGCAGTTTGAGGTTGGTGGC
TGCAGCAAAAATACGATCAAACATGGCGTGTATTTGTTTTCATCATGGAC
ACTGGTCGTTTGTTATTTTCCCTCTGACATATTTACGTGCCTGACTCTTA
CCACTCTTCTTTTACAGACTGCACTAAGTATTTTCTTCCAAGAAGCCGTG
CCCAACGCTCACGGACACCATGGCGGGCATCATCCGGTAAGTTGAGCCGG
GGTTTTGTAGAGGTTTCATCTGTGTTTTTGTTTTCGGAATGTCGTCCATG
CATTCGTGGGTTTTACAATGACGATGCATGGCGATGTGGGGAGGGAAGAG
GGCCCCAGGGGGCTTGGAAAAAACGGCAGTCCTTTTATTCAACCCAGATC
TGTCAAATAAAAAAGCCTTGCTCACATCTGTCACTATTTTAACCGCATAG
CCATCGTAATCTTTGCATTTTTGGACTGTCTTTTGAGTCTGTCTCCCTTT
GTTGATGTTTTTTACGGAACCCCACCCCCTACGGGGCCAGTCCACAACAC
TCGGCAGCCATGTTGGTTTCTCTTTTGCAATCATTTATTTCCTTCACAGT
CCTTCAATATTCTTTAGATTTCAGATTCCTGAACTTATAACACTTTCTTG
AGAACATTACTGATGCGAATAAAGTGTTCAATTGTTTCATGATACGAACA
TGTGGCTTTGTTGATGTAACCAAGGGGGTTTAAAAAGGAAAAGGCAGTTA
TTTAAATTTTAGTGTAGAGGCATGCATATCATTTGCTGGTGCTGGTATTC
AAATAAATCTGCATGGAAAAAACATTGTGCTTTTTTGGAAAATCCTTCAG
TTTACTGCTGTTTATTTTTATGAAATTTGTCTAAACTGGTTTGAATATTC
ACGGATCTCTGGAGACTTGCAAATTTGTTCTGCCATTCACTGATGAATAG
CTATCCCACAATTCTACTTCCTGCCAGGTGACTCAGCTGATGTTGTCATC
ATGTTGTGATTTCAGCCCAGTAAAAACAAATATTCATCGTCAGCCGTAAA
AAAAATTGGCAACAGTATTGATTGATTTGCAGCAGCATTGATTTCTTGCA
GGAAAAAAAATGACGAAGTTTCTATTCCAGTCTAGGAAGACGGTATCTTT
TATTTGGCTGTCAATAGTAGCTTTTTTAAAAAGAGTATGCCAATATTATG
CTGTGTGTAGACCATTTCAGACTAAGCCATATGTTTCTTTGAATAACACA
ACATTTGGCTCTGTTTTGAAGCCTTAGAAATATAATGCATATTTTGTTTT
CAAAGAAGTCATGGTATGATGGCATCTATTAATTGATTGAACCAAATATG
AGCCCCAGGCTTTTTGTTCTTTCTAAAACATCAACAGAAATGTCTTTGCC
ATCAAAGTAGGTGAGGGGTTGGATGTCTTCAAGATTGATCATGGCTTCTT
GGAAGGTGTTTTGGTTGATAGTCTGCCAACTGTAACCTTGCGTCCATGGT
TGTTACAAACATTGGCAGGAAGGACTGTCAACAAAGACAGCCCTTTTGTG
TTACCGTACCCCCAACCCAACATTTGCATGCAGTTGACTGACTCACGAAT
GGGCGTTATGGGAGTATGAAACATCTCTCAGCTGCTATTATTCTTTGACC
GTAAGAACAAATGTTTGAGATGTTGAGTGCAGGATAGCCCTTGTCAGTTC
CTGGGTACATGGTTGGCCTGTAGCCAGCTTCAATAGACAAACATAGCCAT
CCAAAGGTTGGAATGGAAACTGGACCCCTGTTTTTTAAAGTCATTGTTTA
GTTTTAGGACCAGGGTAGCCGTGATGCTGCCAGTGTCTGGTTCTAGTTAA
ACTCCATGCGGTGTCTGAGATGGATGTATTTGGTACAGTTTTAAATAAGA
TTATGAAGTAAAGCTTGTATTGAAGGAATAGAATAAGGCAGGTACTTAAT
ACATGTAAATACAGTTGAGTGACGTGGAGGGTAAACATACATAAACACTG
GAGGATATGCACTGTGTGAAACATACAAGAGGAGAGAGAGAGAACTTTCA
TTCAGCCTAGCATGTTTGTTTGGTTATAGCTGAGCAGTATCAGGGTACTG
CCCAAATTCACAAGGAGTGCCAAAATGTTAAGAACAAGAGACCAAAATTT
GAGTTCCACTTTCTCAAGCAATAACAAGAATAGTAGTCCCGTGAGTCAGG
GCTCAAAGTCCAATGTAGTAGATCCTATCTCCACCCATTTATCTTGCCTT
TCTAGTTTTTGGTCTCTTTGATTTTTGCCATGGAGCTACTGCCTTGTGCA
GCTTGAATCCCACTCCTTGTTATCTCCATATCTCCATGAAAAATGGAGAT
ATAGTTTTGGGTGTGTCTGTCTGTGTGTATGTTTGTGTTTCCGGACTACT
TTAGACAGCATAACTCAAGAACCTCTTGATGGATTACAATGATATTTGGT
ATGTGGGCAGGTGTTGGGAAGCCAAAATTCAGAGTCGATTTTGGGCCCCC
TGGTATGTGACCTTGGTACTGCAGCAGAAGTTCAATTTTTGTATCTTTTG
ACCTGGACGTGCTGTGGTCTTGATTTTTGGGTGGCAGATGTAATAAAGAA
GTGGTATAGGTTTGGGCCCTCTAGCAGCTTCCTCTGGTTCTTTGTTCATG
CAGTCACTCATCACAATTTTTAGACATTTACACAGACAACTGTAATACTG
TTTCATTCAACATTGGTTTTAAGTCTGCTCAACACTGACTTATCCACAAG
CCCTCATTTACGTCACAATCCAGTGGCTTCTTTACATCCTGTTTTTTCCC
CCCCGTAGATGTGTACGCCAGCCAACACGCCAGCCACGCCGCCTGCCTTC
CCAGACACTTTAACAGCGTTTTCCAAGCTACAAGCGTCAGACACCGGCGC
CAGTCCCGCGACGACAAAATACAGTTGCAGCNAGCTACAAGCATCAGACA
CCGGCGCCAGTCCCGGGACAACAAAATACAGTTGCAGCCCTGTTAGCCCC
CTAGCTTCCTCACCTCCCAATAGCCAACAACCCATGGAAGTAAACGCACA
GAGATGAAAGGAACACACGGGTACAAACGGCACAGCTTACCATGCAGTAG
AAGATGTGGAATGGCTGTCTTGTATACTTCTGAAATATGGACTAGTCGGA
GAGAAATGTACAAAAAAAATGGATTAGGAACTATAATAAAAAGGCACAAA
TCTAGATGGGGCTAATGAAATGTATTAGAAGATTGAGTCAGTCGATTACC
ACGCATGACAAGTAGGCAGGGAGAGATGACATACTGGTCAGTAAATGAAA
TGGATCATAATTAGGGCCTTGTTGCAAGGATGTGGAACTTTAACCAGGTG
GTACTACAATCAAGGAGTGATGAAATGATGAAGAGATGTGTTTCTTGACA
TTGAACGCTGAATAATTATGTCTCAGGTGATATTACACTGTAACAGAAGT
GTATATACGTGTGTAGAGAGAATGATGAGCCGATGTGAGGGAGATGTAAT
GCAAAAAATTTTGTAAAGACTTTTCAGCTGTGGCTGGGAATATATACAAG
GATGTTCTGTTTCCTGTTATATAGATAGGTGTTATATGTGTGTATCCTTA
TAATTTTGTTATCTATGTGTGTGTGATAGTATTTTCGCCATGATAAGTGA
CTACAGTTTTCTTTTTTTTATGCTAGTAACCAACTGTTGCATGTTGCTGT
ATTTTGTACTTTTTCTGGGATTCTTGTTTGGTGTTCTAGACTCAGTGGTG
AAGTAACACACCACAGAAGCAAGTGTTTATATGTAGGCAAAAATGCCCTC
AGAATTGTACAGTAATGCAGTAAGAAGAATATCCAGAAACTTATGATAAA
AGCGTAGCCTAAAAGACGTTGAAATACCCTTCAAGAACTCCTGCAATAAA
AGATTCCATACACACAAAATGATACCTCCAGTGTTTATTGCCTGTTTGTC
TATGTTTACAGCAAGTGCAGCTCACAATATGCCACAATTGAATCTGCT Coding sequence (CDS) from alignment at Sc0000103:690830..695677+ >transcript:BL77531_cuf1 ID=transcript:BL77531_cuf1|Name=transcript:BL77531_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1272bp|location=Sequence derived from alignment at Sc0000103:690830..695677+ (Branchiostoma lanceolatum)
ATGGGAGACAACTTGAGAGAGCACGTTATGATCAACCAGTTCGTCATGAC
GGCTGGCTGCACGTTTGACCAGGCCAAGACGCTACTTCAGAAGGCCCACT
GGCAGTTTGAGACTGCACTAAGTATTTTCTTCCAAGAAGCCGTGCCCAAC
GCTCACGGACACCATGGCGGGCATCATCCGATGTGTACGCCAGCCAACAC
GCCAGCCACGCCGCCTGCCTTCCCAGACACTTTAACAGCGTTTTCCAAGC
TACAAGCGTCAGACACCGGCGCCATCCCGGGACAACAAAATACAGTTGCA
GCCCTGTTAGCCCCCTAGATGGGAGACAACTTGAGAGAGCACGTTATGAT
CAACCAGTTCGTCATGACGGCTGGCTGCACGTTTGACCAGGCCAAGACGC
TACTTCAGAAGGCCCACTGGCAGTTTGAGACTGCACTAAGTATTTTCTTC
CAAGAAGCCGTGCCCAACGCTCACGGACACCATGGCGGGCATCATCCGAT
GTGTACGCCAGCCAACACGCCAGCCACGCCGCCTGCCTTCCCAGACACTT
TAACAGCGTTTTCCAAGCTACAAGCGTCAGACACCGGCGCCATCCCGGGA
CAACAAAATACAGTTGCAGCCCTGTTAGCCCCCTAGATGGGAGACAACTT
GAGAGAGCACGTTATGATCAACCAGTTCGTCATGACGGCTGGCTGCACGT
TTGACCAGGCCAAGACGCTACTTCAGAAGGCCCACTGGCAGTTTGAGACT
GCACTAAGTATTTTCTTCCAAGAAGCCGTGCCCAACGCTCACGGACACCA
TGGCGGGCATCATCCGATGTGTACGCCAGCCAACACGCCAGCCACGCCGC
CTGCCTTCCCAGACACTTTAACAGCGTTTTCCAAGCTACAAGCGTCAGAC
ACCGGCGCCATCCCGGGACAACAAAATACAGTTGCAGCCCTGTTAGCCCC
CTAGATGGGAGACAACTTGAGAGAGCACGTTATGATCAACCAGTTCGTCA
TGACGGCTGGCTGCACGTTTGACCAGGCCAAGACGCTACTTCAGAAGGCC
CACTGGCAGTTTGAGACTGCACTAAGTATTTTCTTCCAAGAAGCCGTGCC
CAACGCTCACGGACACCATGGCGGGCATCATCCGATGTGTACGCCAGCCA
ACACGCCAGCCACGCCGCCTGCCTTCCCAGACACTTTAACAGCGTTTTCC
AAGCTACAAGCGTCAGACACCGGCGCCATCCCGGGACAACAAAATACAGT
TGCAGCCCTGTTAGCCCCCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000103 | genome | Sc0000103:690830..695677 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77531_cuf1 |
| Biotype | protein_coding |
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