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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77529_cuf0 >transcript:BL77529_cuf0-protein ID=transcript:BL77529_cuf0-protein|Name=transcript:BL77529_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=226bp
MEEIRENVLDIECRNIRVQCRSVRDLLIHLLCHPKYKDHLSQDEISVRFS
GDGRQVTRNNRIGAVIGTLQIIPNRDIIDKDTESAQLHHTIDEEASIFPY
EGGEDYEIQRKSARRVYEEMEDIQKNGLSIGDKTLKVKWHLTADRKFLST
MLGINGASSKSFCLWCHCKKEEICDFDKQSWNIYKEKNRRPQPLHRPERI
LRPCQSSPDNFEFDRIVPDVLHLVYL Run BLAST on NCBI mRNA from alignment at Sc0000295:307824..313446+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77529_cuf0 ID=transcript:BL77529_cuf0|Name=transcript:BL77529_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=5623bp|location=Sequence derived from alignment at Sc0000295:307824..313446+ (Branchiostoma lanceolatum)
AGGAAAAAAAAGAGCAGAGCAAGATGATTCCAGTCATAACAGACTAAGGT
AACGGGACCTGCCCTAACATGCTACGGATTTTTTACTGATCTTATTTCCC
ATAACTACGCCGTGTTTGTGTCCAATGACTATGCTGATAAGGAAGGTAAA
TAACCCAAGTTCATGCACATAATTGTCATTTGCATTCAAAACATACATGT
ACATATTCATTTCTTGTTTTGTCGAAAAGTAGTATTTTGACAATAATGAT
GGTAGCGCTGAGTAGAGGGTCACTGCGTAGCTGGACGGCCCGGCACCTAA
ATATACGACCTGTGCCAAGCAGATACACAAGTCACACAACTATCATACGC
ATAAGAAATATAACTTCATAAAACACTAAAAATTTGGGTCTTTAATTGTT
TGTTGAGAAGAAAACCGACCAGAGAAAAACAACGTAAACATTGCTGTCGT
CTGGCGACTTTGTTTTCCCGACATTTTTTTGGGCCTCGATGGTGGCGGAA
CGATTCAACGCACAGCTTTGTTTCGCTCTAACATGTGATTGGTACCGTCC
ATGAAAACGAAACTGAATACAGAGATGGCGAAGATATTTCCCAATAAGTA
GACGGAGCATTGTTGATGTAAGCGGTGTCGTTTTTTCGTAATGATTTCGT
AAGTCGGGCCGCATTCAAGACGTACGTCGGGCCGCGCGCACAGTGCGAGG
TAGCCTATTTCCCGTGAAAACATGAGCTGGGATGCGCTAGATATAGCCCT
TCTCACATGACGTTAGAAGTGCAGACAGTCAAAATTTTCCGGTCAAAAGA
AAGCTAGAATATAGTAGACTTCAAGTCTTATTTACATTTCCCTAACTTCA
TCACCAACTTCCGAAGAGAGCAAAATTACCAAAGCGTAATAAGTTAGGCA
CCCTATCTGGCGTAGCACTAAATCAGAAGGTACATTCGTGAAAATGTCTC
ACAGCGTTTTCCGCCTGTAACGCGGAGCGTGAAGGGCCTATGAACAGTAT
GAATACATTTCTTGTCCATGTATGTTCTTTAGATGAATGTGTTCAAAATT
CATTCATTAAAACCTGACCACTCTCTGGCAACCAGCAATGGCCCGCCGTG
AGTTCGAGCGCGTAAAAAAGCGTAACATGTTAGGGCAGCTCCCGTTATGA
TATACTATACTGATCTTAACATTTGGAATATTTCATTAATGTTGTGTTGG
TGATCAGTAAACTGAAGAAAAAAAATATTCCTTAAAGTGTATAAGACACC
AATGTCATCAAAGTGAAGATTTACCTGAAATTGCATAAACCTTAAATATT
GTTTTATGGCATAGAGATTTGCACAAAATATACACACTTCGGATGCGAGT
GAACAATAAGAACATTATACATCCAGCTGCCGTGAACCTGGTGAGAAGAT
GTTTAAAAATAACATCAGAAGGGTGTGTAGGGTAGAGGAGATTCTCATCA
GGGACAACATGGTTTCCGTGAGGTTGTCAAGAGATGGACGGCAGGTGTCG
AGAAATCAACGGGTTGGTGCAGTGATGGGCACCGTCCGAATTATCCCCAA
CTTAAACTTACTTACTTACCAACAGAAACACAAATTGATAAAATGCTACA
TTCTAACATCGAAAACTAAAAACAGACAAACTGTCGACTATTGCTAGAGT
AATGTTGATCACCTAGTTGTGCCTTCTCTCTTTTTGGAACATTTGGAATC
ATGACTACATACATTGTCCATTTTATGATCGTTCTTACATAACATCAGGT
ATACGAAAGTGTCCTACTTTAACATCATTGTACATTTCTTGTCTAATTCT
ATAGTCTCAAACAGCGATTGGCGCTCATCTTCATATTAGGAACTATCGAG
TAAAAAGTTGGTTTCATTTTCAACATATAAATCGTTACTTTATTATGAAA
GCAACTTATGTTTTACATAGACATTGGAAGGACTTGAGATGTTGAGTCAC
TAACTACCTTTTGCGAATAACCGTTGTCGGTGTAAGATATTTCTATAGGG
AAAATCAAACCTTGTTAAGGGTCAAACACTTAGTTGTTATTATCATACAA
CGTGACTGTATATATACACAGCAGTATATTAACATACATTTTCTTTCTTA
CATGACAAGGTGGAGAGGACTATGACACAGAAATCAGCAGCTTGAACTGT
CCATAGGAAGATGGAGGAAATCAGGGAAAATGTACTGGACATTGAGTGCA
GAAACATCAGAGTGCAGTGGTATGTCACAATGTTCCCAGTACAAGTAGAA
ATATATGCATATACATTTTTAGAAAAATCATTCTAATACCCGAGTGTTCG
GTGGGATATCTCAACATGATTTCTGAACAAATTTCAACCTTGAATGATAG
AACTATACGAAGGAACTTGACTTACTCCTCATCTTGTACCACACCTGTTG
ACCGATAACAACATGGCCAGTCGATCTGTGAGAGACCTGCTAATCCACCT
CCTGTGCCACCCAAAGTACAAGGATCATCTCAGCCAAGACGAGATTTCAG
TGAGGTTTTCTGGTGATGGACGCCAAGTCACCCGAAACAATAGAATTGGT
GCAGTTATTGGCACTCTCCAGATTATCCCGAATCGGGATATCATCGACAA
AGATACCGAGAGTGCCCAGCTGCACCATACTATTGATGAAGAAGCGTCCA
TCTTTCCATATGAAGGTGGGTTTTGTACATTTTACATACATGTGACATAC
ATGGACATTTATAATTTCTATATATATATTTGTTGCAATATTGATTACCT
TCTGCAAGTTACTGTTTTGGGGGTGATCACGTCCGCATCCCAGCTTCTAG
CTGAGTTTTCAGACTAAATATAAAATGCAAAGAACATACACCAAGGAATA
TGAACAAAGGTGTTTATTTTTTCTATAAATAGGAGGAGAGGATTATGAGA
TCCAAAGGAAGTCTGCAAGGCGAGTGTATGAAGAAATGGAGGACATTCAG
AAGAATGGATTGTCCATCGGAGACAAAACGCTGAAAGTTAAATGGTATGC
AGAACACTATTTATTGATGTATCTATAAGTAGACATACATATTAAAGGTG
CACTGTATACTCAATCAAACTTATGCTAGCATAGGTAAAATAAGGTTAGT
TTACATTGTCTAAGTGTTGGGAAAGGTTTAATTCACTTTTGTTGTGTTAA
CATCATTTGATTTCTTTGCACCAATGAACACCTAGGCATCTGACAGCAGA
CAGGAAATTCTTGTCGACAATGCTGGGCATCAACGGAGCCAGCAGTAAAT
CATTCTGCCTGTGGTGCCATTGCAAGAAGGAAGAAATCTGTGACTTTGAC
AGTAAGTAGCCATGCAGAAATTTTAAAAGACGATTTAAGAAAAGGAATAT
GCTGTGCAATGCAGAAAAAAGAAGAATACAACATGTAACGTAACATGACC
ATTTAACGTCCGATTTATTCAAAACGTTATTTATCTTAAAACCGCGCGGA
CAGAGCCAAATAATAAACCCATGGGCAGATGGATAAGCTCTTCTAAAAAG
AAAATGCATGGTCTGTAAGTTTTTCTCCTTCTGTTTAATGCCGTGCGAGC
ATGTATCTATACTGGGGTATATGATGTATAATTGTGCTAGGCTAACCCAT
TATCGTCCACCTCAGTATTTTCCCTTCTAGCGCTATGCTTGAAGAACATA
GACCAGAAAAAATGCACAGTAACTGTCGAAAGCAGTCTACGGACAAATGA
CAGTAAAGTCACTATGTTTGTCCCTCCGCTTGCCCGACGCAATGGAAGAA
AACAACATTTGTTTTGTGAATTTCCCCGACATCAGCAGCACGTGGCGTTC
ACGTGATAAACGCATGGCCATAATGTTATGCCGTGCAAAAATGTATCATC
TGAGCGGGGGTCGCTAGGTTGTACTAAATCTTCCTAAAACTGGCAAGACT
TTCAAACCTCGAATCACCATGGATAGTCGGACGGTCAAAGAAAGGTCTAA
CGTCAGCTACGTTTAAAAGATACTAGCTATCGTGTAGGTTAGAAAAACAT
GATGAAGTACGCGGTGTCGAATTACATATGAAATACATCATGCATGACGA
TTCCGTGCAACTTGTTGTTACTGGTCCAGGAGTTTATTCTGTCATGTCGC
TGAACGTAAACCTTTTTCATTGTTTTGAATAAAAGAGAGAGATGGCTAAG
GATCATACTTATGACGTTCTTTATTGCTCATAAGAACAGGCTTTGGCATA
ATACATTGCGACATGTGGACATGACCCAAACTGGACGTGAACTGCTCCCT
CACGTAAATAGGTCATGTTACGTTAGATGTAGCTGTACCACAATCTTAGA
GTTTTATATGAAAAGCTAAATAGTGTCGGCTAAATGTTGACTTATTTCAA
AATTTGTATACAATGAGACACAAGATGGGCTAACAACACCTTGCTGTAAT
ACAACCTACTTGTTGTTCATATGTTGTTTTAGTACCACGTGACCGCCTTC
ATAATACGATGATAGTGTACAGCAACGAAAGATAATGACTTACCGCACAT
TTGATATTTTTTGCTTGCCTACAGAACAGAGCTGGAACATATATAAAGAG
AAGAACAGGCGACCACAACCGCTACATCGCCCAGAGAGAATACTACGGCC
ATGTCAATCATCTCCTGATAACTTTGAGTTTGATCGAATCGTCCCCGATG
TTCTGCACCTGGTATATCTCTAGTAAAGAATTGTGCTCATTTGTGCTCAA
TTGTGCTTGTGTGTGCACCTGGGGCATTCAGAATGGTCAAATCTGACAAA
TGGCCTCTAGCCCCAGGTGACACGACTTCTGTCACCAGGATGGCAGAGGA
TGACTTGAGTGGTTTCCGATTCCACCCTCTGCCAAGAACTGGGTAAAGTT
CAATGGGATGGCATGTGAAGGTCTAGGGTTAGCCTGGGGTACCTGCCTCC
CACCCGACAACTTTCAGTGGACGAAAATGCTGAAAAATGTCAAATGCAAG
AGTATTTGTTATAGTTAAGTATTATACAGTATTATACAGTATATTTAAAC
ATATCCTAATACAGTTGTAGGCCTTGCAAACCCTCCCTGCGAAAAGGGCC
TCTGATTGCTCGGAAGTAGCAGGGAAGGTGTTAGTCTGGCTAGGTCAGAA
ATTCTGAGGAACCAAATGTACATTTGTATATACATACTTACAATGGAATG
ATGATTTTACTAGTGTGTTATAAAGTTATGTTCCTTGATGTTGCAAAAAT
ACTCATTTAAATGAAAGTTTGTCCGTGGGACAGGGATGGTTAGGTTGGCT
CAGGTGGTATATTGGCCTGCCCTGTGGCTCCCCTGCCCCAAGGTAGTCAA
GATGGAAGTCTTCAAGTACTGTGTACTTGGGTCTTCATCTTGACTACCCC
CCTGGCCAAGTGCAGTGGCCTCCCTGGATTGATACAGGTAGGACTGCAGC
TCAGGGTTCTCCTTCAGGGGGATCCAGGGGTGCTGCTGGCCGGGCCAACT
ACCTGCCCACCTTACCTTCACATGTAAATTCAATGAAATATATTCAATAA
TGTGTCTTGTTGAACACTGAAGTCAATGATCATGTTCACTCAAGGTAGTA
CAGACATAGACATGACCTTATTTCAAAGGTTAAAGTATACACAAATCTAG
CATATTGACATTAAATATATGCC Coding sequence (CDS) from alignment at Sc0000295:307824..313446+ >transcript:BL77529_cuf0 ID=transcript:BL77529_cuf0|Name=transcript:BL77529_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3405bp|location=Sequence derived from alignment at Sc0000295:307824..313446+ (Branchiostoma lanceolatum)
ATGGAGGAAATCAGGGAAAATGTACTGGACATTGAGTGCAGAAACATCAG
AGTGCAGTGTCGATCTGTGAGAGACCTGCTAATCCACCTCCTGTGCCACC
CAAAGTACAAGGATCATCTCAGCCAAGACGAGATTTCAGTGAGGTTTTCT
GGTGATGGACGCCAAGTCACCCGAAACAATAGAATTGGTGCAGTTATTGG
CACTCTCCAGATTATCCCGAATCGGGATATCATCGACAAAGATACCGAGA
GTGCCCAGCTGCACCATACTATTGATGAAGAAGCGTCCATCTTTCCATAT
GAAGGAGGAGAGGATTATGAGATCCAAAGGAAGTCTGCAAGGCGAGTGTA
TGAAGAAATGGAGGACATTCAGAAGAATGGATTGTCCATCGGAGACAAAA
CGCTGAAAGTTAAATGGCATCTGACAGCAGACAGGAAATTCTTGTCGACA
ATGCTGGGCATCAACGGAGCCAGCAGTAAATCATTCTGCCTGTGGTGCCA
TTGCAAGAAGGAAGAAATCTGTGACTTTGACAAACAGAGCTGGAACATAT
ATAAAGAGAAGAACAGGCGACCACAACCGCTACATCGCCCAGAGAGAATA
CTACGGCCATGTCAATCATCTCCTGATAACTTTGAGTTTGATCGAATCGT
CCCCGATGTTCTGCACCTGGTATATCTCTAGATGGAGGAAATCAGGGAAA
ATGTACTGGACATTGAGTGCAGAAACATCAGAGTGCAGTGTCGATCTGTG
AGAGACCTGCTAATCCACCTCCTGTGCCACCCAAAGTACAAGGATCATCT
CAGCCAAGACGAGATTTCAGTGAGGTTTTCTGGTGATGGACGCCAAGTCA
CCCGAAACAATAGAATTGGTGCAGTTATTGGCACTCTCCAGATTATCCCG
AATCGGGATATCATCGACAAAGATACCGAGAGTGCCCAGCTGCACCATAC
TATTGATGAAGAAGCGTCCATCTTTCCATATGAAGGAGGAGAGGATTATG
AGATCCAAAGGAAGTCTGCAAGGCGAGTGTATGAAGAAATGGAGGACATT
CAGAAGAATGGATTGTCCATCGGAGACAAAACGCTGAAAGTTAAATGGCA
TCTGACAGCAGACAGGAAATTCTTGTCGACAATGCTGGGCATCAACGGAG
CCAGCAGTAAATCATTCTGCCTGTGGTGCCATTGCAAGAAGGAAGAAATC
TGTGACTTTGACAAACAGAGCTGGAACATATATAAAGAGAAGAACAGGCG
ACCACAACCGCTACATCGCCCAGAGAGAATACTACGGCCATGTCAATCAT
CTCCTGATAACTTTGAGTTTGATCGAATCGTCCCCGATGTTCTGCACCTG
GTATATCTCTAGATGGAGGAAATCAGGGAAAATGTACTGGACATTGAGTG
CAGAAACATCAGAGTGCAGTGTCGATCTGTGAGAGACCTGCTAATCCACC
TCCTGTGCCACCCAAAGTACAAGGATCATCTCAGCCAAGACGAGATTTCA
GTGAGGTTTTCTGGTGATGGACGCCAAGTCACCCGAAACAATAGAATTGG
TGCAGTTATTGGCACTCTCCAGATTATCCCGAATCGGGATATCATCGACA
AAGATACCGAGAGTGCCCAGCTGCACCATACTATTGATGAAGAAGCGTCC
ATCTTTCCATATGAAGGAGGAGAGGATTATGAGATCCAAAGGAAGTCTGC
AAGGCGAGTGTATGAAGAAATGGAGGACATTCAGAAGAATGGATTGTCCA
TCGGAGACAAAACGCTGAAAGTTAAATGGCATCTGACAGCAGACAGGAAA
TTCTTGTCGACAATGCTGGGCATCAACGGAGCCAGCAGTAAATCATTCTG
CCTGTGGTGCCATTGCAAGAAGGAAGAAATCTGTGACTTTGACAAACAGA
GCTGGAACATATATAAAGAGAAGAACAGGCGACCACAACCGCTACATCGC
CCAGAGAGAATACTACGGCCATGTCAATCATCTCCTGATAACTTTGAGTT
TGATCGAATCGTCCCCGATGTTCTGCACCTGGTATATCTCTAGATGGAGG
AAATCAGGGAAAATGTACTGGACATTGAGTGCAGAAACATCAGAGTGCAG
TGTCGATCTGTGAGAGACCTGCTAATCCACCTCCTGTGCCACCCAAAGTA
CAAGGATCATCTCAGCCAAGACGAGATTTCAGTGAGGTTTTCTGGTGATG
GACGCCAAGTCACCCGAAACAATAGAATTGGTGCAGTTATTGGCACTCTC
CAGATTATCCCGAATCGGGATATCATCGACAAAGATACCGAGAGTGCCCA
GCTGCACCATACTATTGATGAAGAAGCGTCCATCTTTCCATATGAAGGAG
GAGAGGATTATGAGATCCAAAGGAAGTCTGCAAGGCGAGTGTATGAAGAA
ATGGAGGACATTCAGAAGAATGGATTGTCCATCGGAGACAAAACGCTGAA
AGTTAAATGGCATCTGACAGCAGACAGGAAATTCTTGTCGACAATGCTGG
GCATCAACGGAGCCAGCAGTAAATCATTCTGCCTGTGGTGCCATTGCAAG
AAGGAAGAAATCTGTGACTTTGACAAACAGAGCTGGAACATATATAAAGA
GAAGAACAGGCGACCACAACCGCTACATCGCCCAGAGAGAATACTACGGC
CATGTCAATCATCTCCTGATAACTTTGAGTTTGATCGAATCGTCCCCGAT
GTTCTGCACCTGGTATATCTCTAGATGGAGGAAATCAGGGAAAATGTACT
GGACATTGAGTGCAGAAACATCAGAGTGCAGTGTCGATCTGTGAGAGACC
TGCTAATCCACCTCCTGTGCCACCCAAAGTACAAGGATCATCTCAGCCAA
GACGAGATTTCAGTGAGGTTTTCTGGTGATGGACGCCAAGTCACCCGAAA
CAATAGAATTGGTGCAGTTATTGGCACTCTCCAGATTATCCCGAATCGGG
ATATCATCGACAAAGATACCGAGAGTGCCCAGCTGCACCATACTATTGAT
GAAGAAGCGTCCATCTTTCCATATGAAGGAGGAGAGGATTATGAGATCCA
AAGGAAGTCTGCAAGGCGAGTGTATGAAGAAATGGAGGACATTCAGAAGA
ATGGATTGTCCATCGGAGACAAAACGCTGAAAGTTAAATGGCATCTGACA
GCAGACAGGAAATTCTTGTCGACAATGCTGGGCATCAACGGAGCCAGCAG
TAAATCATTCTGCCTGTGGTGCCATTGCAAGAAGGAAGAAATCTGTGACT
TTGACAAACAGAGCTGGAACATATATAAAGAGAAGAACAGGCGACCACAA
CCGCTACATCGCCCAGAGAGAATACTACGGCCATGTCAATCATCTCCTGA
TAACTTTGAGTTTGATCGAATCGTCCCCGATGTTCTGCACCTGGTATATC
TCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000295 | genome | Sc0000295:307824..313446 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77529_cuf0 |
| Biotype | protein_coding |
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