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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77524_cuf0 >transcript:BL77524_cuf0-protein ID=transcript:BL77524_cuf0-protein|Name=transcript:BL77524_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=668bp
RNIPKAKPTNKKRKLSWRNKAVNTKLNNKQKHWKKYCETRKQEDYRKYAK
ARNQARWAARKAVKKYEKQMAKNIKTNAKLFWKYVNAKSKTRSGIPDLKE
GTTVARTDREKAKLLNYFFVTSFTSENIAHMPKPTARYYDEELTDVEISL
EEVKQRLKNINPNKAMGPDNMHPRLLYELAETLATPLQIMYSNSIYEGKI
PNDWKIADVTPLHKKGSRNTPGNYRPVSLTSVVCKVLESIVRDAIVKHMR
HNNLFTTHQHGFIPGRSTTTQMLECMDKWTEWLDKGLPVDAVYLDFRKAF
DSVPIQRLLAKVQSYGITGNILKWIKSFIQGRRQMVRVNGTRSDWAAVTS
GVPQGSVLGPVLFSLFVNDLPETVQSDLKLFADDTKIYRPVAKVNDCAVI
QKDLHQLQSWAEDWQLNFHPMKCTVIRLGKGHPDFVYTMTDKEASTSLNF
TQLEKDLGIMVDKDLNFSNHVAAITNKANQVAGLMWRTFEFVDKKVFLLL
YKSLIRPHLEYGAPVWSPYSWKLAFELEQVQKRATKRVPGLRNMTYEERL
RVLDLPTLVYRRIRGDLINTYKFIHGVYDLESPFDLIEETRTRGHSLRIK
RKTSKSNRRAHFFSVRVIPWWNSLPETVVVSPSINCFKERLDRLMRKHKV
YFDFRALDNPHKLEMTVT Run BLAST on NCBI mRNA from alignment at xpSc0039703:4631..6713- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77524_cuf0 ID=transcript:BL77524_cuf0|Name=transcript:BL77524_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2083bp|location=Sequence derived from alignment at xpSc0039703:4631..6713- (Branchiostoma lanceolatum)
AAGAAATATACCAAAAGCGAAGCCGACAAACAAAAAAAGAAAGCTCTCAT
GGCGGAATAAAGCTGTTAACACAAAACTGAACAACAAACAAAAACACTGG
AAAAAATACTGTGAGACAAGGAAACAAGAAGACTACAGAAAATACGCAAA
AGCACGAAATCAGGCTAGATGGGCCGCAAGAAAGGCAGTGAAGAAGTACG
AGAAACAGATGGCCAAAAATATCAAAACAAATGCAAAACTTTTCTGGAAA
TACGTAAACGCCAAATCAAAAACTCGCTCAGGTATCCCTGACTTGAAGGA
AGGAACAACAGTTGCGAGAACTGACCGAGAGAAAGCCAAACTTCTAAATT
ATTTCTTTGTCACAAGTTTTACAAGCGAAAATATAGCACACATGCCGAAA
CCAACGGCCAGGTATTATGATGAAGAATTAACAGATGTCGAAATTAGTCT
TGAAGAAGTGAAGCAAAGGCTGAAGAACATCAACCCTAACAAAGCAATGG
GTCCTGATAATATGCATCCTAGGCTTTTATATGAGCTTGCAGAGACGTTG
GCAACTCCTCTTCAAATTATGTACTCTAATTCCATATACGAAGGCAAAAT
CCCCAACGACTGGAAAATTGCCGACGTCACACCGCTGCACAAAAAAGGAT
CTAGGAATACCCCAGGAAATTACCGCCCCGTCAGTTTGACATCAGTGGTG
TGTAAGGTACTAGAGAGTATTGTTCGGGATGCCATAGTAAAACATATGCG
ACATAATAATCTCTTCACGACACACCAACACGGATTTATACCTGGTAGGT
CAACAACCACCCAAATGCTGGAATGTATGGATAAATGGACAGAATGGCTA
GACAAAGGCCTGCCAGTAGACGCTGTCTACTTAGACTTTCGTAAGGCTTT
CGATTCGGTGCCAATCCAGAGATTACTAGCAAAAGTACAAAGTTATGGAA
TAACGGGCAACATTCTGAAGTGGATTAAATCCTTCATACAAGGGAGAAGG
CAGATGGTACGGGTAAACGGCACAAGATCGGACTGGGCAGCAGTAACTAG
TGGCGTGCCTCAGGGAAGTGTGCTGGGTCCGGTGCTGTTCTCCTTGTTTG
TTAACGATCTACCTGAGACTGTGCAAAGTGACCTAAAGCTTTTCGCGGAC
GATACGAAAATTTACCGTCCAGTAGCAAAGGTTAACGACTGTGCCGTCAT
ACAGAAAGATCTACATCAACTACAAAGCTGGGCAGAAGATTGGCAGCTGA
ACTTTCACCCTATGAAATGTACTGTCATTAGGTTGGGAAAGGGTCATCCT
GACTTTGTATACACTATGACGGACAAAGAAGCAAGTACATCTTTGAACTT
CACACAGTTAGAGAAAGACCTGGGTATTATGGTAGATAAGGACCTGAACT
TCAGTAATCACGTAGCTGCAATAACCAACAAAGCCAATCAAGTTGCAGGA
CTTATGTGGAGAACCTTTGAATTTGTCGATAAAAAAGTATTCTTACTCTT
GTACAAATCTCTAATCCGCCCACACTTGGAATACGGGGCACCAGTGTGGT
CACCATACTCGTGGAAACTAGCTTTTGAGCTCGAACAGGTTCAAAAGAGG
GCAACAAAACGTGTCCCTGGCCTCAGGAATATGACGTATGAGGAGAGACT
TAGAGTGTTGGACTTACCAACTCTAGTCTACAGACGTATTAGGGGAGACT
TGATCAACACATACAAGTTCATCCATGGAGTGTATGACTTGGAAAGCCCT
TTCGACTTGATCGAGGAAACTAGAACTAGAGGACACAGTTTACGTATAAA
GAGGAAAACATCTAAATCCAACAGAAGAGCACACTTCTTCAGCGTCCGGG
TGATCCCCTGGTGGAATAGCCTACCCGAGACAGTAGTGGTTTCTCCCAGC
ATAAACTGTTTCAAGGAGAGGCTGGACAGGCTCATGCGGAAACACAAGGT
GTACTTTGACTTCCGAGCTCTAGACAACCCCCACAAACTGGAAATGACTG
TGACATAAAAGTGAAGAGCGGCCTAAAATGGAACCAGCCGATTCCTACCT
GGCCGAAGAAACTCTACTCTACTCTACTCTACT Coding sequence (CDS) from alignment at xpSc0039703:4631..6713- >transcript:BL77524_cuf0 ID=transcript:BL77524_cuf0|Name=transcript:BL77524_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2007bp|location=Sequence derived from alignment at xpSc0039703:4631..6713- (Branchiostoma lanceolatum)
AGAAATATACCAAAAGCGAAGCCGACAAACAAAAAAAGAAAGCTCTCATG
GCGGAATAAAGCTGTTAACACAAAACTGAACAACAAACAAAAACACTGGA
AAAAATACTGTGAGACAAGGAAACAAGAAGACTACAGAAAATACGCAAAA
GCACGAAATCAGGCTAGATGGGCCGCAAGAAAGGCAGTGAAGAAGTACGA
GAAACAGATGGCCAAAAATATCAAAACAAATGCAAAACTTTTCTGGAAAT
ACGTAAACGCCAAATCAAAAACTCGCTCAGGTATCCCTGACTTGAAGGAA
GGAACAACAGTTGCGAGAACTGACCGAGAGAAAGCCAAACTTCTAAATTA
TTTCTTTGTCACAAGTTTTACAAGCGAAAATATAGCACACATGCCGAAAC
CAACGGCCAGGTATTATGATGAAGAATTAACAGATGTCGAAATTAGTCTT
GAAGAAGTGAAGCAAAGGCTGAAGAACATCAACCCTAACAAAGCAATGGG
TCCTGATAATATGCATCCTAGGCTTTTATATGAGCTTGCAGAGACGTTGG
CAACTCCTCTTCAAATTATGTACTCTAATTCCATATACGAAGGCAAAATC
CCCAACGACTGGAAAATTGCCGACGTCACACCGCTGCACAAAAAAGGATC
TAGGAATACCCCAGGAAATTACCGCCCCGTCAGTTTGACATCAGTGGTGT
GTAAGGTACTAGAGAGTATTGTTCGGGATGCCATAGTAAAACATATGCGA
CATAATAATCTCTTCACGACACACCAACACGGATTTATACCTGGTAGGTC
AACAACCACCCAAATGCTGGAATGTATGGATAAATGGACAGAATGGCTAG
ACAAAGGCCTGCCAGTAGACGCTGTCTACTTAGACTTTCGTAAGGCTTTC
GATTCGGTGCCAATCCAGAGATTACTAGCAAAAGTACAAAGTTATGGAAT
AACGGGCAACATTCTGAAGTGGATTAAATCCTTCATACAAGGGAGAAGGC
AGATGGTACGGGTAAACGGCACAAGATCGGACTGGGCAGCAGTAACTAGT
GGCGTGCCTCAGGGAAGTGTGCTGGGTCCGGTGCTGTTCTCCTTGTTTGT
TAACGATCTACCTGAGACTGTGCAAAGTGACCTAAAGCTTTTCGCGGACG
ATACGAAAATTTACCGTCCAGTAGCAAAGGTTAACGACTGTGCCGTCATA
CAGAAAGATCTACATCAACTACAAAGCTGGGCAGAAGATTGGCAGCTGAA
CTTTCACCCTATGAAATGTACTGTCATTAGGTTGGGAAAGGGTCATCCTG
ACTTTGTATACACTATGACGGACAAAGAAGCAAGTACATCTTTGAACTTC
ACACAGTTAGAGAAAGACCTGGGTATTATGGTAGATAAGGACCTGAACTT
CAGTAATCACGTAGCTGCAATAACCAACAAAGCCAATCAAGTTGCAGGAC
TTATGTGGAGAACCTTTGAATTTGTCGATAAAAAAGTATTCTTACTCTTG
TACAAATCTCTAATCCGCCCACACTTGGAATACGGGGCACCAGTGTGGTC
ACCATACTCGTGGAAACTAGCTTTTGAGCTCGAACAGGTTCAAAAGAGGG
CAACAAAACGTGTCCCTGGCCTCAGGAATATGACGTATGAGGAGAGACTT
AGAGTGTTGGACTTACCAACTCTAGTCTACAGACGTATTAGGGGAGACTT
GATCAACACATACAAGTTCATCCATGGAGTGTATGACTTGGAAAGCCCTT
TCGACTTGATCGAGGAAACTAGAACTAGAGGACACAGTTTACGTATAAAG
AGGAAAACATCTAAATCCAACAGAAGAGCACACTTCTTCAGCGTCCGGGT
GATCCCCTGGTGGAATAGCCTACCCGAGACAGTAGTGGTTTCTCCCAGCA
TAAACTGTTTCAAGGAGAGGCTGGACAGGCTCATGCGGAAACACAAGGTG
TACTTTGACTTCCGAGCTCTAGACAACCCCCACAAACTGGAAATGACTGT
GACATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xpSc0039703 | genome | xpSc0039703:4631..6713 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77524_cuf0 |
| Biotype | protein_coding |
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